[O] Re: [Orgmode] Re: Org Babel and R issue with pdf latex export

2011-02-28 Thread Rainer M Krug
On Mon, Feb 28, 2011 at 8:07 AM, Ben Ward benjamin.w...@bathspa.org wrote:
 On Sun, 2011-02-27 at 21:35 -0800, Dan Davison wrote:
 Ben Ward benjamin.w...@bathspa.org writes:

  Hi,
 
  I recently installed emacs, org-mode fresh on a new install of Arch
  Linux. Before I had it working on Ubuntu.
 
  I've installed everything as before and used the same .emacs file I had,
  but if I use org to write out some R script and export to pdf via latex,
  then I get an empty pdf document, with only the title and Contents
  heading. However if I export to anything else such as html it works, and
  shows me code and results.

 Hi Ben,

 Are you sure this problem concerns babel/R? What happens when you export
 an Org document to pdf without any babel stuff?

 Can you provide an example Org file that you are having trouble
 exporting to pdf? The problem is probably in your local configuration,
 so if no-one can jump to the solution then start from a minimal working
 config and try to find the part of your .emacs which is causing the
 problem.

 Dan

 Hi, I've tried exporting an org file that has no code in it to PDF and
 it works without any trouble.

 The file I'm trying to export is:
 #+TITLE: Test
 #+AUTHOR: Ben J. Ward
 #+LATEX_CLASS: article
 #+BABEL: :session *R* :results output
 \pagebreak

 Test:

 #+begin_src R :exports both
 x-c(1,2,3,4,5)
 y-c(5,10,15,20)
 x
 y
 xy-(x*y)
 xy
 #+end_src

When I use your example and export it to LaTeX,

I get this:

#
% Created 2011-02-28 Mon 12:21
\documentclass[11pt]{article}
\usepackage[utf8]{inputenc}
\usepackage[T1]{fontenc}
\usepackage{fixltx2e}
\usepackage{graphicx}
\usepackage{longtable}
\usepackage{float}
\usepackage{wrapfig}
\usepackage{soul}
\usepackage{textcomp}
\usepackage{marvosym}
\usepackage{wasysym}
\usepackage{latexsym}
\usepackage{amssymb}
\usepackage{hyperref}
\tolerance=1000
\usepackage{color}
\usepackage{listings}
\providecommand{\alert}[1]{\textbf{#1}}
\begin{document}



\title{Test}
\author{Ben J. Ward}
\date{28 February 2011}
\maketitle

\setcounter{tocdepth}{3}
\tableofcontents
\vspace*{1cm}
The file I'm trying to export is:
\pagebreak

Test:

\lstset{language=R}
\begin{lstlisting}
x-c(1,2,3,4,5)
y-c(5,10,15,20)
x
y
xy-(x*y)
xy
\end{lstlisting}

\begin{verbatim}
 [1] 1 2 3 4 5
 [1]  5 10 15 20
 Warning message:
 In x * y : longer object length is not a multiple of shorter object length
 [1]  5 20 45 80 25
\end{verbatim}



\end{document}
#
So it works for me - have you tried to export to LaTex? If that works,
it is a LaTeX / pdf issue.

Rainer


 I can include my .emacs although it's lengthy.

 I uninstalled all of my emacs stuff, and installed it from the vanilla
 downloads on their respective sites, and I'm still getting the same
 result. I'm considering removing all my tex stuff and installing the
 vanilla texlive too.

 Thanks,
 Ben W.


  I've tried even installing a version of org
  mode from source, using the build system my distro has, so as it's made
  and installed to exactly the right place, but I still don't have any
  luck. The texlive version I'm using is from my distro's package manager.
  Using C-c C-c to evaluate on the fly works. I had an issue getting org
  and babel to work with R on Windows 7 as well, but it was because
  certain tex packages were missing and I recieved a message when I tried
  to export, but nothing comes up here.
 
  Would the recent change:
  Org-babel is now inside org, remove (require 'org-babel-init)
    and alike from your .emacs.
    Look at http://orgmode.org/Changes.html#ob-configuration-changes
    for overview of the settings.
  Be causing the entire issue?
 
  The .tex file I get out is thus:
  % Created 2011-02-28 Mon 03:47
  \documentclass[11pt]{article}
  \usepackage[utf8]{inputenc}
  \usepackage[T1]{fontenc}
  \usepackage{fixltx2e}
  \usepackage{graphicx}
  \usepackage{longtable}
  \usepackage{float}
  \usepackage{wrapfig}
  \usepackage{soul}
  \usepackage{textcomp}
  \usepackage{marvosym}
  \usepackage{wasysym}
  \usepackage{latexsym}
  \usepackage{amssymb}
  \usepackage{hyperref}
  \tolerance=1000
  \providecommand{\alert}[1]{\textbf{#1}}
  \begin{document}
 
 
 
  \title{Test}
  \author{Ben J. Ward}
  \date{28 February 2011}
  \maketitle
 
  \setcounter{tocdepth}{3}
  \tableofcontents
  \vspace*{1cm}
 
  \end{document}
 
  Thanks,
  Ben W.
  (Apologies if this has been sent twice, first time an error occured)
 
 
  ___
  Emacs-orgmode mailing list
  Please use `Reply All' to send replies to the list.
  Emacs-orgmode@gnu.org
  http://lists.gnu.org/mailman/listinfo/emacs-orgmode




 ___
 Emacs-orgmode mailing list
 Please use `Reply All' to send replies to the list.
 Emacs-orgmode@gnu.org
 http://lists.gnu.org/mailman/listinfo/emacs-orgmode




-- 
NEW GERMAN FAX NUMBER!!!

Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc 

[O] Re: [Orgmode] Re: Org Babel and R issue with pdf latex export

2011-02-28 Thread Ben Ward

On 28/02/2011 11:24, Rainer M Krug wrote:

On Mon, Feb 28, 2011 at 8:07 AM, Ben Wardbenjamin.w...@bathspa.org  wrote:

On Sun, 2011-02-27 at 21:35 -0800, Dan Davison wrote:

Ben Wardbenjamin.w...@bathspa.org  writes:


Hi,

I recently installed emacs, org-mode fresh on a new install of Arch
Linux. Before I had it working on Ubuntu.

I've installed everything as before and used the same .emacs file I had,
but if I use org to write out some R script and export to pdf via latex,
then I get an empty pdf document, with only the title and Contents
heading. However if I export to anything else such as html it works, and
shows me code and results.

Hi Ben,

Are you sure this problem concerns babel/R? What happens when you export
an Org document to pdf without any babel stuff?

Can you provide an example Org file that you are having trouble
exporting to pdf? The problem is probably in your local configuration,
so if no-one can jump to the solution then start from a minimal working
config and try to find the part of your .emacs which is causing the
problem.

Dan


Hi, I've tried exporting an org file that has no code in it to PDF and
it works without any trouble.

The file I'm trying to export is:
#+TITLE: Test
#+AUTHOR: Ben J. Ward
#+LATEX_CLASS: article
#+BABEL: :session *R* :results output
\pagebreak

Test:

#+begin_src R :exports both
x-c(1,2,3,4,5)
y-c(5,10,15,20)
x
y
xy-(x*y)
xy
#+end_src

When I use your example and export it to LaTeX,

I get this:

#
% Created 2011-02-28 Mon 12:21
\documentclass[11pt]{article}
\usepackage[utf8]{inputenc}
\usepackage[T1]{fontenc}
\usepackage{fixltx2e}
\usepackage{graphicx}
\usepackage{longtable}
\usepackage{float}
\usepackage{wrapfig}
\usepackage{soul}
\usepackage{textcomp}
\usepackage{marvosym}
\usepackage{wasysym}
\usepackage{latexsym}
\usepackage{amssymb}
\usepackage{hyperref}
\tolerance=1000
\usepackage{color}
\usepackage{listings}
\providecommand{\alert}[1]{\textbf{#1}}
\begin{document}



\title{Test}
\author{Ben J. Ward}
\date{28 February 2011}
\maketitle

\setcounter{tocdepth}{3}
\tableofcontents
\vspace*{1cm}
The file I'm trying to export is:
\pagebreak

Test:

\lstset{language=R}
\begin{lstlisting}
x-c(1,2,3,4,5)
y-c(5,10,15,20)
x
y
xy-(x*y)
xy
\end{lstlisting}

\begin{verbatim}
  [1] 1 2 3 4 5
  [1]  5 10 15 20
  Warning message:
  In x * y : longer object length is not a multiple of shorter object length
  [1]  5 20 45 80 25
\end{verbatim}



\end{document}
#
So it works for me - have you tried to export to LaTex? If that works,
it is a LaTeX / pdf issue.

Rainer

Hi, I've just tried and I still get the same as before, but it works to 
latex, when there is no src code chunks.

This is my .emacs:

(require 'ess-site)
(require 'org-install)
(add-to-list 'auto-mode-alist '(\\.org\\' . org-mode))
(global-set-key \C-cl 'org-store-link)
(global-set-key \C-cc 'org-capture)
(global-set-key \C-ca 'org-agenda)
(global-set-key \C-cb 'org-iswitchb)
(transient-mark-mode 1)
(org-babel-do-load-languages
 'org-babel-load-languages
 '((R . t)
   (emacs-lisp . t)
   ))

(custom-set-variables
  ;; custom-set-variables was added by Custom.
  ;; If you edit it by hand, you could mess it up, so be careful.
  ;; Your init file should contain only one such instance.
  ;; If there is more than one, they won't work right.
 '(org-confirm-babel-evaluate nil))
(custom-set-faces
  ;; custom-set-faces was added by Custom.
  ;; If you edit it by hand, you could mess it up, so be careful.
  ;; Your init file should contain only one such instance.
  ;; If there is more than one, they won't work right.
 )

Thanks,
Ben W.


I can include my .emacs although it's lengthy.

I uninstalled all of my emacs stuff, and installed it from the vanilla
downloads on their respective sites, and I'm still getting the same
result. I'm considering removing all my tex stuff and installing the
vanilla texlive too.

Thanks,
Ben W.


I've tried even installing a version of org
mode from source, using the build system my distro has, so as it's made
and installed to exactly the right place, but I still don't have any
luck. The texlive version I'm using is from my distro's package manager.
Using C-c C-c to evaluate on the fly works. I had an issue getting org
and babel to work with R on Windows 7 as well, but it was because
certain tex packages were missing and I recieved a message when I tried
to export, but nothing comes up here.

Would the recent change:
Org-babel is now inside org, remove (require 'org-babel-init)
   and alike from your .emacs.
   Look at http://orgmode.org/Changes.html#ob-configuration-changes
   for overview of the settings.
Be causing the entire issue?

The .tex file I get out is thus:
% Created 2011-02-28 Mon 03:47
\documentclass[11pt]{article}
\usepackage[utf8]{inputenc}
\usepackage[T1]{fontenc}
\usepackage{fixltx2e}
\usepackage{graphicx}
\usepackage{longtable}
\usepackage{float}
\usepackage{wrapfig}

Re: [O] Re: [Orgmode] Re: Org Babel and R issue with pdf latex export

2011-02-28 Thread Erik Iverson

Ben,

And what about your .Rprofile. Since your R code does produce
a warning, I wonder if you have instructed R to take some
special action when it sees one?

--Erik

Ben Ward wrote:

On 28/02/2011 11:24, Rainer M Krug wrote:
On Mon, Feb 28, 2011 at 8:07 AM, Ben Wardbenjamin.w...@bathspa.org  
wrote:

On Sun, 2011-02-27 at 21:35 -0800, Dan Davison wrote:

Ben Wardbenjamin.w...@bathspa.org  writes:


Hi,

I recently installed emacs, org-mode fresh on a new install of Arch
Linux. Before I had it working on Ubuntu.

I've installed everything as before and used the same .emacs file I 
had,
but if I use org to write out some R script and export to pdf via 
latex,

then I get an empty pdf document, with only the title and Contents
heading. However if I export to anything else such as html it 
works, and

shows me code and results.

Hi Ben,

Are you sure this problem concerns babel/R? What happens when you 
export

an Org document to pdf without any babel stuff?

Can you provide an example Org file that you are having trouble
exporting to pdf? The problem is probably in your local configuration,
so if no-one can jump to the solution then start from a minimal working
config and try to find the part of your .emacs which is causing the
problem.

Dan


Hi, I've tried exporting an org file that has no code in it to PDF and
it works without any trouble.

The file I'm trying to export is:
#+TITLE: Test
#+AUTHOR: Ben J. Ward
#+LATEX_CLASS: article
#+BABEL: :session *R* :results output
\pagebreak

Test:

#+begin_src R :exports both
x-c(1,2,3,4,5)
y-c(5,10,15,20)
x
y
xy-(x*y)
xy
#+end_src

When I use your example and export it to LaTeX,

I get this:

#
% Created 2011-02-28 Mon 12:21
\documentclass[11pt]{article}
\usepackage[utf8]{inputenc}
\usepackage[T1]{fontenc}
\usepackage{fixltx2e}
\usepackage{graphicx}
\usepackage{longtable}
\usepackage{float}
\usepackage{wrapfig}
\usepackage{soul}
\usepackage{textcomp}
\usepackage{marvosym}
\usepackage{wasysym}
\usepackage{latexsym}
\usepackage{amssymb}
\usepackage{hyperref}
\tolerance=1000
\usepackage{color}
\usepackage{listings}
\providecommand{\alert}[1]{\textbf{#1}}
\begin{document}



\title{Test}
\author{Ben J. Ward}
\date{28 February 2011}
\maketitle

\setcounter{tocdepth}{3}
\tableofcontents
\vspace*{1cm}
The file I'm trying to export is:
\pagebreak

Test:

\lstset{language=R}
\begin{lstlisting}
x-c(1,2,3,4,5)
y-c(5,10,15,20)
x
y
xy-(x*y)
xy
\end{lstlisting}

\begin{verbatim}
  [1] 1 2 3 4 5
  [1]  5 10 15 20
  Warning message:
  In x * y : longer object length is not a multiple of shorter object 
length

  [1]  5 20 45 80 25
\end{verbatim}



\end{document}
#
So it works for me - have you tried to export to LaTex? If that works,
it is a LaTeX / pdf issue.

Rainer

Hi, I've just tried and I still get the same as before, but it works to 
latex, when there is no src code chunks.

This is my .emacs:

(require 'ess-site)
(require 'org-install)
(add-to-list 'auto-mode-alist '(\\.org\\' . org-mode))
(global-set-key \C-cl 'org-store-link)
(global-set-key \C-cc 'org-capture)
(global-set-key \C-ca 'org-agenda)
(global-set-key \C-cb 'org-iswitchb)
(transient-mark-mode 1)
(org-babel-do-load-languages
 'org-babel-load-languages
 '((R . t)
   (emacs-lisp . t)
   ))

(custom-set-variables
  ;; custom-set-variables was added by Custom.
  ;; If you edit it by hand, you could mess it up, so be careful.
  ;; Your init file should contain only one such instance.
  ;; If there is more than one, they won't work right.
 '(org-confirm-babel-evaluate nil))
(custom-set-faces
  ;; custom-set-faces was added by Custom.
  ;; If you edit it by hand, you could mess it up, so be careful.
  ;; Your init file should contain only one such instance.
  ;; If there is more than one, they won't work right.
 )

Thanks,
Ben W.


I can include my .emacs although it's lengthy.

I uninstalled all of my emacs stuff, and installed it from the vanilla
downloads on their respective sites, and I'm still getting the same
result. I'm considering removing all my tex stuff and installing the
vanilla texlive too.

Thanks,
Ben W.


I've tried even installing a version of org
mode from source, using the build system my distro has, so as it's 
made

and installed to exactly the right place, but I still don't have any
luck. The texlive version I'm using is from my distro's package 
manager.

Using C-c C-c to evaluate on the fly works. I had an issue getting org
and babel to work with R on Windows 7 as well, but it was because
certain tex packages were missing and I recieved a message when I 
tried

to export, but nothing comes up here.

Would the recent change:
Org-babel is now inside org, remove (require 'org-babel-init)
   and alike from your .emacs.
   Look at http://orgmode.org/Changes.html#ob-configuration-changes
   for overview of the settings.
Be causing the entire issue?

The .tex file I get out is thus:
% Created 2011-02-28 Mon 03:47

Re: [O] Re: [Orgmode] Re: Org Babel and R issue with pdf latex export

2011-02-28 Thread Erik Iverson



Erik Iverson wrote:

Ben,

And what about your .Rprofile. Since your R code does produce
a warning, I wonder if you have instructed R to take some
special action when it sees one?


Related, how does the export process that's not working affect
the *R* buffer in Emacs?  Can you paste that buffer (or at least
the relevant portions?)

Thanks!



--Erik

Ben Ward wrote:

On 28/02/2011 11:24, Rainer M Krug wrote:
On Mon, Feb 28, 2011 at 8:07 AM, Ben Wardbenjamin.w...@bathspa.org  
wrote:

On Sun, 2011-02-27 at 21:35 -0800, Dan Davison wrote:

Ben Wardbenjamin.w...@bathspa.org  writes:


Hi,

I recently installed emacs, org-mode fresh on a new install of Arch
Linux. Before I had it working on Ubuntu.

I've installed everything as before and used the same .emacs file 
I had,
but if I use org to write out some R script and export to pdf via 
latex,

then I get an empty pdf document, with only the title and Contents
heading. However if I export to anything else such as html it 
works, and

shows me code and results.

Hi Ben,

Are you sure this problem concerns babel/R? What happens when you 
export

an Org document to pdf without any babel stuff?

Can you provide an example Org file that you are having trouble
exporting to pdf? The problem is probably in your local configuration,
so if no-one can jump to the solution then start from a minimal 
working

config and try to find the part of your .emacs which is causing the
problem.

Dan


Hi, I've tried exporting an org file that has no code in it to PDF and
it works without any trouble.

The file I'm trying to export is:
#+TITLE: Test
#+AUTHOR: Ben J. Ward
#+LATEX_CLASS: article
#+BABEL: :session *R* :results output
\pagebreak

Test:

#+begin_src R :exports both
x-c(1,2,3,4,5)
y-c(5,10,15,20)
x
y
xy-(x*y)
xy
#+end_src

When I use your example and export it to LaTeX,

I get this:

#
% Created 2011-02-28 Mon 12:21
\documentclass[11pt]{article}
\usepackage[utf8]{inputenc}
\usepackage[T1]{fontenc}
\usepackage{fixltx2e}
\usepackage{graphicx}
\usepackage{longtable}
\usepackage{float}
\usepackage{wrapfig}
\usepackage{soul}
\usepackage{textcomp}
\usepackage{marvosym}
\usepackage{wasysym}
\usepackage{latexsym}
\usepackage{amssymb}
\usepackage{hyperref}
\tolerance=1000
\usepackage{color}
\usepackage{listings}
\providecommand{\alert}[1]{\textbf{#1}}
\begin{document}



\title{Test}
\author{Ben J. Ward}
\date{28 February 2011}
\maketitle

\setcounter{tocdepth}{3}
\tableofcontents
\vspace*{1cm}
The file I'm trying to export is:
\pagebreak

Test:

\lstset{language=R}
\begin{lstlisting}
x-c(1,2,3,4,5)
y-c(5,10,15,20)
x
y
xy-(x*y)
xy
\end{lstlisting}

\begin{verbatim}
  [1] 1 2 3 4 5
  [1]  5 10 15 20
  Warning message:
  In x * y : longer object length is not a multiple of shorter object 
length

  [1]  5 20 45 80 25
\end{verbatim}



\end{document}
#
So it works for me - have you tried to export to LaTex? If that works,
it is a LaTeX / pdf issue.

Rainer

Hi, I've just tried and I still get the same as before, but it works 
to latex, when there is no src code chunks.

This is my .emacs:

(require 'ess-site)
(require 'org-install)
(add-to-list 'auto-mode-alist '(\\.org\\' . org-mode))
(global-set-key \C-cl 'org-store-link)
(global-set-key \C-cc 'org-capture)
(global-set-key \C-ca 'org-agenda)
(global-set-key \C-cb 'org-iswitchb)
(transient-mark-mode 1)
(org-babel-do-load-languages
 'org-babel-load-languages
 '((R . t)
   (emacs-lisp . t)
   ))

(custom-set-variables
  ;; custom-set-variables was added by Custom.
  ;; If you edit it by hand, you could mess it up, so be careful.
  ;; Your init file should contain only one such instance.
  ;; If there is more than one, they won't work right.
 '(org-confirm-babel-evaluate nil))
(custom-set-faces
  ;; custom-set-faces was added by Custom.
  ;; If you edit it by hand, you could mess it up, so be careful.
  ;; Your init file should contain only one such instance.
  ;; If there is more than one, they won't work right.
 )

Thanks,
Ben W.


I can include my .emacs although it's lengthy.

I uninstalled all of my emacs stuff, and installed it from the vanilla
downloads on their respective sites, and I'm still getting the same
result. I'm considering removing all my tex stuff and installing the
vanilla texlive too.

Thanks,
Ben W.


I've tried even installing a version of org
mode from source, using the build system my distro has, so as it's 
made

and installed to exactly the right place, but I still don't have any
luck. The texlive version I'm using is from my distro's package 
manager.
Using C-c C-c to evaluate on the fly works. I had an issue getting 
org

and babel to work with R on Windows 7 as well, but it was because
certain tex packages were missing and I recieved a message when I 
tried

to export, but nothing comes up here.

Would the recent change:
Org-babel is now inside org, remove (require 'org-babel-init)
   and alike from your .emacs.
   Look at 

Re: [O] Re: [Orgmode] Re: Org Babel and R issue with pdf latex export

2011-02-28 Thread Ben Ward
On Mon, 2011-02-28 at 11:56 -0600, Erik Iverson wrote:
 Ben,
 
 And what about your .Rprofile. Since your R code does produce
 a warning, I wonder if you have instructed R to take some
 special action when it sees one?
 

R on my system is as default with no special instruction by me. Tried
removing the source of error in the code block, still no luck. My *R*
Buffer contains:

 options(STERM='iESS', editor='emacsclient')
 x-c(1,2,3,4,5)
y-c(5,10,15,20)
x
y
'org_babel_R_eoe'
x-c(1,2,3,4,5)
 y-c(5,10,15,20)
 x
[1] 1 2 3 4 5
 y
[1]  5 10 15 20
 'org_babel_R_eoe'
[1] org_babel_R_eoe
 

Thanks,
Ben.

 --Erik
 
 Ben Ward wrote:
  On 28/02/2011 11:24, Rainer M Krug wrote:
  On Mon, Feb 28, 2011 at 8:07 AM, Ben Wardbenjamin.w...@bathspa.org  
  wrote:
  On Sun, 2011-02-27 at 21:35 -0800, Dan Davison wrote:
  Ben Wardbenjamin.w...@bathspa.org  writes:
 
  Hi,
 
  I recently installed emacs, org-mode fresh on a new install of Arch
  Linux. Before I had it working on Ubuntu.
 
  I've installed everything as before and used the same .emacs file I 
  had,
  but if I use org to write out some R script and export to pdf via 
  latex,
  then I get an empty pdf document, with only the title and Contents
  heading. However if I export to anything else such as html it 
  works, and
  shows me code and results.
  Hi Ben,
 
  Are you sure this problem concerns babel/R? What happens when you 
  export
  an Org document to pdf without any babel stuff?
 
  Can you provide an example Org file that you are having trouble
  exporting to pdf? The problem is probably in your local configuration,
  so if no-one can jump to the solution then start from a minimal working
  config and try to find the part of your .emacs which is causing the
  problem.
 
  Dan
 
  Hi, I've tried exporting an org file that has no code in it to PDF and
  it works without any trouble.
 
  The file I'm trying to export is:
  #+TITLE: Test
  #+AUTHOR: Ben J. Ward
  #+LATEX_CLASS: article
  #+BABEL: :session *R* :results output
  \pagebreak
 
  Test:
 
  #+begin_src R :exports both
  x-c(1,2,3,4,5)
  y-c(5,10,15,20)
  x
  y
  xy-(x*y)
  xy
  #+end_src
  When I use your example and export it to LaTeX,
 
  I get this:
 
  #
  % Created 2011-02-28 Mon 12:21
  \documentclass[11pt]{article}
  \usepackage[utf8]{inputenc}
  \usepackage[T1]{fontenc}
  \usepackage{fixltx2e}
  \usepackage{graphicx}
  \usepackage{longtable}
  \usepackage{float}
  \usepackage{wrapfig}
  \usepackage{soul}
  \usepackage{textcomp}
  \usepackage{marvosym}
  \usepackage{wasysym}
  \usepackage{latexsym}
  \usepackage{amssymb}
  \usepackage{hyperref}
  \tolerance=1000
  \usepackage{color}
  \usepackage{listings}
  \providecommand{\alert}[1]{\textbf{#1}}
  \begin{document}
 
 
 
  \title{Test}
  \author{Ben J. Ward}
  \date{28 February 2011}
  \maketitle
 
  \setcounter{tocdepth}{3}
  \tableofcontents
  \vspace*{1cm}
  The file I'm trying to export is:
  \pagebreak
 
  Test:
 
  \lstset{language=R}
  \begin{lstlisting}
  x-c(1,2,3,4,5)
  y-c(5,10,15,20)
  x
  y
  xy-(x*y)
  xy
  \end{lstlisting}
 
  \begin{verbatim}
[1] 1 2 3 4 5
[1]  5 10 15 20
Warning message:
In x * y : longer object length is not a multiple of shorter object 
  length
[1]  5 20 45 80 25
  \end{verbatim}
 
 
 
  \end{document}
  #
  So it works for me - have you tried to export to LaTex? If that works,
  it is a LaTeX / pdf issue.
 
  Rainer
 
  Hi, I've just tried and I still get the same as before, but it works to 
  latex, when there is no src code chunks.
  This is my .emacs:
  
  (require 'ess-site)
  (require 'org-install)
  (add-to-list 'auto-mode-alist '(\\.org\\' . org-mode))
  (global-set-key \C-cl 'org-store-link)
  (global-set-key \C-cc 'org-capture)
  (global-set-key \C-ca 'org-agenda)
  (global-set-key \C-cb 'org-iswitchb)
  (transient-mark-mode 1)
  (org-babel-do-load-languages
   'org-babel-load-languages
   '((R . t)
 (emacs-lisp . t)
 ))
  
  (custom-set-variables
;; custom-set-variables was added by Custom.
;; If you edit it by hand, you could mess it up, so be careful.
;; Your init file should contain only one such instance.
;; If there is more than one, they won't work right.
   '(org-confirm-babel-evaluate nil))
  (custom-set-faces
;; custom-set-faces was added by Custom.
;; If you edit it by hand, you could mess it up, so be careful.
;; Your init file should contain only one such instance.
;; If there is more than one, they won't work right.
   )
  
  Thanks,
  Ben W.
  
  I can include my .emacs although it's lengthy.
 
  I uninstalled all of my emacs stuff, and installed it from the vanilla
  downloads on their respective sites, and I'm still getting the same
  result. I'm considering removing all my tex stuff and installing the
  vanilla texlive too.
 
  Thanks,
  Ben W.
 
  I've tried even installing a version of org
  mode from source, using the build system my