[Orgmode] Images from R in LaTeX and PDF
Hi All, I've been doing some work with babel and R to generate graphs that I've then been including useing attr latex. But when I include images the always appear very very small, even when I mess about with the width settings of the attr latex line and remove the options for wrap and such. Does anybody else use R with images and org, and could tell me how they handle including R graphics in their documents? Thanks, Ben. W ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] Images from R in LaTeX and PDF
Aloha Ben, Can you share an example that doesn't work for you? All the best, Tom On Jan 7, 2011, at 7:23 AM, Ben Ward wrote: Hi All, I've been doing some work with babel and R to generate graphs that I've then been including useing attr latex. But when I include images the always appear very very small, even when I mess about with the width settings of the attr latex line and remove the options for wrap and such. Does anybody else use R with images and org, and could tell me how they handle including R graphics in their documents? Thanks, Ben. W ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] Images from R in LaTeX and PDF
#+begin_src R :exports both
full - read.csv(file=~/Documents/BSc Biology/Third Year/BY6001-40 -
Dissertation/Data and Analysis/Evolution Results.csv, head=T)
library(lattice)
ecoli = subset(full, Bacterium==E.coli)
edett = subset(ecoli, Cleaner==Dettol)
egarl = subset(ecoli, Cleaner==Garlic)
MIC.mod = lm(MIC. ~ 1+Challenge*Cleaner*Replicate, data=ecoli)
#+end_src
#+begin_src R :file fig1.pdf
xyplot( MIC.+fitted(MIC.mod) ~ Challenge, data=ecoli,
xlab=Challenge, ylab=MIC %, auto.key=TRUE)
#+end_src
#+attr_latex: width=0.6\textwidth wrap placement={h}{0.4\textwidth}
#+label: fig:one
#+caption: Linar Plot of real data and fitted model values
#+results: fig1
[[file:fig1.pdf]]
In the case of this code, actually altering size works, but it keeps
putting the image at the end of my document. Then other images, placed
with pretty much the same code, give or take for filenames and such,
won't increace in size, but will alter their movement.
I'm wondering if using pure latex for my images would be an easier solution.
Cheers,
Ben.
On 07/01/2011 18:30, Thomas S. Dye wrote:
Aloha Ben,
Can you share an example that doesn't work for you?
All the best,
Tom
On Jan 7, 2011, at 7:23 AM, Ben Ward wrote:
Hi All,
I've been doing some work with babel and R to generate graphs that
I've then been including useing attr latex.
But when I include images the always appear very very small, even
when I mess about with the width settings of the attr latex line and
remove the options for wrap and such.
Does anybody else use R with images and org, and could tell me how
they handle including R graphics in their documents?
Thanks,
Ben. W
___
Emacs-orgmode mailing list
Please use `Reply All' to send replies to the list.
Emacs-orgmode@gnu.org
http://lists.gnu.org/mailman/listinfo/emacs-orgmode
___
Emacs-orgmode mailing list
Please use `Reply All' to send replies to the list.
Emacs-orgmode@gnu.org
http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] Images from R in LaTeX and PDF
I'm using 7.4, which I think (unless a new versions recently arisen),
the latest one, as it was recommended for interacting with R through babel.
Thanks,
Ben W.
On 07/01/2011 19:45, Erik Iverson wrote:
And what version of org are you using?
Ben Ward wrote:
#+begin_src R :exports both
full - read.csv(file=~/Documents/BSc Biology/Third Year/BY6001-40
- Dissertation/Data and Analysis/Evolution Results.csv, head=T)
library(lattice)
ecoli = subset(full, Bacterium==E.coli)
edett = subset(ecoli, Cleaner==Dettol)
egarl = subset(ecoli, Cleaner==Garlic)
MIC.mod = lm(MIC. ~ 1+Challenge*Cleaner*Replicate, data=ecoli)
#+end_src
#+begin_src R :file fig1.pdf
xyplot( MIC.+fitted(MIC.mod) ~ Challenge, data=ecoli,
xlab=Challenge, ylab=MIC %, auto.key=TRUE)
#+end_src
#+attr_latex: width=0.6\textwidth wrap placement={h}{0.4\textwidth}
#+label: fig:one
#+caption: Linar Plot of real data and fitted model values
#+results: fig1
[[file:fig1.pdf]]
In the case of this code, actually altering size works, but it keeps
putting the image at the end of my document. Then other images,
placed with pretty much the same code, give or take for filenames and
such, won't increace in size, but will alter their movement.
I'm wondering if using pure latex for my images would be an easier
solution.
Cheers,
Ben.
On 07/01/2011 18:30, Thomas S. Dye wrote:
Aloha Ben,
Can you share an example that doesn't work for you?
All the best,
Tom
On Jan 7, 2011, at 7:23 AM, Ben Ward wrote:
Hi All,
I've been doing some work with babel and R to generate graphs that
I've then been including useing attr latex.
But when I include images the always appear very very small, even
when I mess about with the width settings of the attr latex line
and remove the options for wrap and such.
Does anybody else use R with images and org, and could tell me how
they handle including R graphics in their documents?
Thanks,
Ben. W
___
Emacs-orgmode mailing list
Please use `Reply All' to send replies to the list.
Emacs-orgmode@gnu.org
http://lists.gnu.org/mailman/listinfo/emacs-orgmode
___
Emacs-orgmode mailing list
Please use `Reply All' to send replies to the list.
Emacs-orgmode@gnu.org
http://lists.gnu.org/mailman/listinfo/emacs-orgmode
___
Emacs-orgmode mailing list
Please use `Reply All' to send replies to the list.
Emacs-orgmode@gnu.org
http://lists.gnu.org/mailman/listinfo/emacs-orgmode
