[O] how to make org-clock-in close the files it opens

2011-08-02 Thread Julian Burgos
Dear list, When using org-clock-in, all files in my agenda list are opened. This makes sense, as org mode is looking for clocks already opened. But it is possible to make org mode to close all these files? I do keep lots of files in my agenda, and it is a pain to have to close them by hand.

[O] Problems with editing R source code in Linux

2011-09-02 Thread Julian Burgos
Dear list, I'm having some problems editing source code. I recently moved from Windows to Fedora 14 and maybe I'm missing something obvious If so, my apologies. When pressing C-c ' to edit a block of R source code, I get the following message in the minibuffer: Language mode 'R-mode' fails

Re: [O] Problems with editing R source code in Linux

2011-09-02 Thread Julian Burgos
Never mind!! I figured out by combing through my emacs file. One of my custom function was making reference to a file using Windows-like path. I feel dumb as a rock... On Fri, Sep 2, 2011 at 2:14 PM, Julian Burgos jmbur...@uw.edu wrote: Dear list, I'm having some problems editing source code

[Orgmode] inserting images in HTML export

2011-02-21 Thread Julian Burgos
Dear list, Here is another of my newbie questions. As many others, I´m exploring ways to export my nice org-mode document (with R code that generates output and graphs) into word or open office. My colleagues do not use org mode or LaTex, so I need to generate a word or open office document .

[O] org-src-fontify-natively makes things very, very slow

2011-03-17 Thread Julian Burgos
Dear list, I was very excited to discover org-src-fontify-natively, but I´m not having a good experience with it. When it is on, org-mode becomes very slow while typing into a code block. This happens regardless of the size of the file or number of blocks, and the slow down is very noticeable.

Re: [O] Re: org-src-fontify-natively makes things very, very slow

2011-03-17 Thread Julian Burgos
When editing the block in native mode everything works fine. Closing the buffer (or even rebooting the computer) had no effect. I´ll keep this off until is fixed. It is though a great feature! 2011/3/17 Sébastien Vauban wxhgmqzgw...@spammotel.com: Hi all, Eric S Fraga wrote: Julian Burgos

Re: [O] Re: org-src-fontify-natively makes things very, very slow

2011-03-18 Thread Julian Burgos
Hi Eric, I have a small function to insert the opening and ending of an R code block bound to a key, so I always edit the code between a #+begin_src R and #+end_src R. I still get a considerable slowdown, even with an empty document with a single line of code. Julian On Fri, Mar 18, 2011 at

[O] Editing source code function name?

2011-03-24 Thread Julian Burgos
Hello fellow org-moders, We use C-c ' to edit the current code block. I would like to use a different key combination, but I cannot figure out the name of function that is called when pressing C-c'. I (think) I need it to map the new key combination in my .emacs file. Thanks for the help,

[O] Re: Editing source code function name?

2011-03-24 Thread Julian Burgos
C-h k! Great tool... you learn something new every day. Thanks!! On Thu, Mar 24, 2011 at 12:16 PM, Jambunathan K kjambunat...@gmail.com wrote: Julian Burgos jmbur...@uw.edu writes: Hello fellow org-moders, We use C-c ' to edit the current code block. I would like to use a different key

[O] agenda view opening multiple buffers

2011-03-27 Thread Julian Burgos
Dear list, When asking for an agenda view (C-c a), org mode opens all files in the agenda list in individual buffers. I keep lots of files in my list (one per project), so having all those buffers open each time I visit my agenda is pretty annoying. Is there a way to make org mode not open each

Re: [O] Re: agenda view opening multiple buffers

2011-03-27 Thread Julian Burgos
Hansen wrote: Julian Burgos jmbur...@uw.edu writes: Dear list, When asking for an agenda view (C-c a), org mode opens all files in the agenda list in individual buffers.  I keep lots of files in my list (one per project), so having all those buffers open each time I visit my agenda is pretty

[O] installing the OpenDocumentText Exporter

2011-06-12 Thread Julian Burgos
Apologies for the basic question. I need some help installing the OpenDocumentText Exporter using the ELPA (package manager). I´ve added the org-odt repository by adding this to my .emacs file: (setq package-archives '((ELPA . http://tromey.com/elpa/;) (gnu .

Re: [O] installing the OpenDocumentText Exporter

2011-06-13 Thread Julian Burgos
the conventional tar file? Many thanks, Julian On Mon, Jun 13, 2011 at 4:21 AM, Jambunathan K kjambunat...@gmail.com wrote: Julian Burgos jmbur...@uw.edu writes: Apologies for the basic question.  I need some help installing the OpenDocumentText Exporter using the ELPA (package manager).  I´ve added

Re: [O] installing the OpenDocumentText Exporter

2011-06-13 Thread Julian Burgos
Ah! That was it! I got org-odt installed. On Mon, Jun 13, 2011 at 1:15 PM, Jambunathan K kjambunat...@gmail.com wrote: Julian Burgos jmbur...@uw.edu writes: Hi I don´t have the M-x list-packages option.  When I do M-x package-list-packages I get a list of packages, but org-odt

Re: [O] odt export not working

2013-05-07 Thread Julian Burgos
Manfred Lotz manfred.lotz at arcor.de writes: Are you calling (require 'ox-odt) somewhere in your config? Or configuring `org-export-backends'? ODT export isn't loaded by default, you'll have to load it explicitly by one of those two methods. This should be included in the manual. From

Re: [O] confused about Beamer export

2013-05-16 Thread Julian Burgos
Thanks Eric, but I solved the issue already. I had some errors in my .emacs file (a mixture of settings for the old and new exporter). Julian M. Burgos jul...@hafro.is writes: Dear list, I am a bit confused about what I have to use the new Beamer exporter. I have customized the

[O] Save-buffer within a code block

2012-09-06 Thread Julian Burgos
Hello fellow Org-mode'rs: I noticed that now, when editing code in ESS mode (after switching from org-mode using C-') I cannot use save-buffer to save any changes into my org mode file. Instead, when doing save-buffer I get prompted for a new file name and the only the code block gets saved.

[O] collaborating between org-mode and MS Word users

2012-12-27 Thread Julian Burgos
Dear list, I use org-mode to draft papers and reports, using embedded R code and LaTex snippets. It is a fantastic tool. But sometimes I have to collaborate with less enlighted colleagues who use MS Word. For now I am exporting my document to odt, and from there to MS word. Then, when I get

Re: [O] How to deal with small projects which are often changing their status/ person

2013-01-23 Thread Julian Burgos
Hi Martin, I think that you should be using tags for this. For example: * Project XYZ :projectxyz:J.Smith: ** TODO Write Text ** WAIT Feedback on Text ** TODO check feedback ** TODO send to original author ** WAIT for Feedback In this case you are adding a tag with the project name and

Re: [O] Newbie question

2013-02-08 Thread Julian Burgos
Hi Ken, If you do C-u C-c . you will get an active timestamp with date and time. C-u C-c ! will give you an inactive timestamp with date and time. I also have this code in my .emacs file, so whenever I create a headline I get an inactive timestamp automatically. It should be easy to change

[O] org 8.0 and new exporter ETA?

2013-02-12 Thread Julian Burgos
Dear org-people, First of all, my thanks to everyone who contributes to this project! My (digital) life orbits around org-mode now. I am very happy with my current emacs/org-mode set up, but (being a permanent tinkerer) I am planning to do some relatively important changes, in particular in

Re: [O] org 8.0 and new exporter ETA?

2013-02-12 Thread Julian Burgos
Thanks Bastien. Keep up the good work! On 02/12/2013 10:30 AM, Bastien wrote: Dear Julian, Julian Burgos jul...@hafro.is writes: First of all, my thanks to everyone who contributes to this project! My (digital) life orbits around org-mode now. :) I am very happy with my current emacs

Re: [O] Offer for taking over maintainership

2013-02-14 Thread Julian Burgos
I called the community riffraffs for a reason. They are in truth riffsraffs. I have two post-graduate degrees, but I cannot code in elisp so I guess I am among the worthless ones (riffraff: 1. People regarded as disreputable or worthless. 2. Rubbish; trash.). To be honest, I do not care who

[O] buffer-wide tangle filename

2012-03-28 Thread Julian Burgos
Hello everyone, This may be a very simple question. I want to tangle multiple source code blocks into a single file. Instead of using the same output filename as a block header (e.g. :tangle output.el) in each code block, can I I define a buffer-wide tangle filename? Something like this (which

Re: [O] buffer-wide tangle filename

2012-03-29 Thread Julian Burgos
Thanks!! You were right. The position of the colon was wrong (but is still needed), and I had to refresh the local setup. On fim 29.mar 2012 07:57, Sebastien Vauban wrote: Hello Julian, Julian Burgos wrote: This may be a very simple question. I want to tangle multiple source code blocks

[O] problems with LaTex/BibTex

2012-03-29 Thread Julian Burgos
Dear list, I'm having some problems with LaTex exporting and reference lists. This is my a quick test: -- start of org mode file #+TITLE: This is a test * Heading 1 Some text, some text \cite{Steiniger2009a}. * Heading 2 Some other text

Re: [O] problems with LaTex/BibTex

2012-03-30 Thread Julian Burgos
Yes! That was it. Thanks!! On fös 30.mar 2012 08:05, suvayu ali wrote: Hey Julian, On Fri, Mar 30, 2012 at 03:41, Julian Burgosjul...@hafro.is wrote: The References.bib is a BibTex file in the same folder as the test file. The citations were entered using RefTex with no problem. But when

[O] setting default BibTex file

2012-04-02 Thread Julian Burgos
Dear list, This should be pretty easy to answer. I am having some problems defining a default BibTex file. If I put this at the end of my org file, \bibliographystyle{plain} \bibliography{/home/julian/Documents/Refs/BibTex/References} everything works with no problem. But if I add this to

[O] Updating BibTex file

2012-04-11 Thread Julian Burgos
Dear list, How can I made org mode / reftex to recognize changes in my BibTex file? Here is the scenario. I have my default BibTex file defined with the reftex-default-bibliography variable. While working on my org mode document I am adding references and everything is working fine. The

[O] table of contents and numbers

2012-04-11 Thread Julian Burgos
Dear list, My apologies for another very basic question. I'm wondering why I do not get a table of contents when exporting the following file as pdf ---start org file --- #+TITLE: Test #+OPTIONS: toc:t num:nil * Part 1 Some text * Part 2 Some more text ---end org file ---

Re: [O] table of contents and numbers

2012-04-12 Thread Julian Burgos
Thanks for the answer Nick. So to get a TOC without numbers I would need to edit the TEX file directly, right? On mið 11.apr 2012 19:00, John Hendy wrote: On Wed, Apr 11, 2012 at 12:12 PM, Nick Dokosnicholas.do...@hp.com wrote: Julian Burgosjul...@hafro.is wrote: Dear list, My apologies

[O] flyspell and code blocks

2012-04-23 Thread Julian Burgos
Hello fellow org'ers, It is possible to make flyspell to ignore (i.e. do not spell check) the text within code blocks (I mean blocks of texts separated by #+begin_src and #+end src)? I did my homework but could not find a good answer. Many thanks, Julian -- Julian Mariano Burgos, PhD

[O] little annoyance

2012-05-24 Thread Julian Burgos
Dear list: Is there any way to stop org-mode from adding blank spaces on the left margin of an R source code block when returning from editing in ESS mode? Here is an example: 1) I create my org mode file with an R source code block: -start org mode--- *

[Orgmode] Automatically insert inactive timestamps

2010-12-07 Thread Julian Burgos
Dear list, This is the newbie question of the day. I would like to get an inactive time stamp automatically in each new entry in org mode. Could somebody explain me how to do this? Many thanks, Julian -- Julian Mariano Burgos Hafrannsóknastofnunin/Marine Research Institute Skúlagata 4, 121

[Orgmode] evaluating all R code blocks (newbie question)

2011-01-20 Thread Julian Burgos
Dear list, Hopefully this is not too basic, nor has been answered before. I would like to know if there is away to have alll R code blocks in a document evaluated automatically (i.e. without query) when exporting to Latex. Now I have to answer yes multiple times to the question Evaluate this R

Re: [Orgmode] Re: evaluating all R code blocks (newbie question)

2011-01-20 Thread Julian Burgos
Mitchell we...@gmx.li wrote: Julian Burgos wrote: Dear list, Hopefully this is not too basic, nor has been answered before. I would like to know if there is away to have alll R code blocks in a document evaluated automatically (i.e. without query) when exporting to Latex.  Now I have to answer

Re: [Orgmode] Re: evaluating all R code blocks (newbie question)

2011-01-20 Thread Julian Burgos
Yes, you are right. For now, I´ll turn confirmation off for R code only, and keep an eye on .org files from unknown origins. All the best, Julian On Thu, Jan 20, 2011 at 4:00 PM, Lawrence Mitchell we...@gmx.li wrote: Julian Burgos wrote: Many thanks Lawrence.  Yes, I'm aware of the risks

Re: [O] Organizing and taming hectic Academia work (faculty viewpoint)? Tips or a good guides sought after :)

2015-06-10 Thread Julian Burgos
Windy, I am a researcher (not in academia, but in a government lab). I use emacs and org-mode a lot, for project management, programming (using R and GRASS), writing papers, keeping notes, etc.etc. I find that collaborative writing is problematic because most people use Word, and in most cases

Re: [O] org-ref helm-bibtex notes

2015-06-17 Thread Julian Burgos
could be solved by replacing the colon with some other acceptable character on the tag, like @ or _. So a reference with BibTeXkey Smith,Jones 2008 would get a tag Smith@Jones2008 or Smith_Jones2008. Julian On 2015-06-16 Tue 17:39, Julian Burgos wrote: Dear list, I have been using org-ref

Re: [O] org-ref helm-bibtex notes

2015-06-17 Thread Julian Burgos
file is the best option. Julian Burgos writes: Dear list, I have been using org-ref for a while, using reftex to insert citations in my org documents. Now I am switching to helm-bibtex, which is pretty awesome. I have a couple of question about the note files. Org-ref uses a single

[O] org-ref helm-bibtex notes

2015-06-16 Thread Julian Burgos
Dear list, I have been using org-ref for a while, using reftex to insert citations in my org documents. Now I am switching to helm-bibtex, which is pretty awesome. I have a couple of question about the note files. Org-ref uses a single file to keep notes (e.g. notes.org), but helm-bibtex

Re: [O] Organizing and taming hectic Academia work (faculty viewpoint)? Tips or a good guides sought after :)

2015-06-15 Thread Julian Burgos
Hi Ken, This is a good idea! I will give it a try. Thanks! Julian Hi Julian, On 2015-06-10 at 10:16, Julian Burgos jul...@hafro.is wrote: a) I first write in org-mode. Export to Word, either exporting first to ODT and then to Word, or to LaTex and then use pandoc to convert LaTex to Word

Re: [O] Notes on using org-reveal for presentations

2015-07-15 Thread Julian Burgos
Thanks Matt! I am giving two talks in September and I was already thinking about trying some of the html exporters instead of using beamer as always. I will read your notes in detail. All the best, Julian -- Julian Mariano Burgos, PhD Hafrannsóknastofnun/Marine Research Institute Skúlagata 4,

[O] org-ref-clean-bibtex-entry and UTF-8

2016-01-13 Thread Julian Burgos
Dear list, I am using org-ref-clean-bibtex-entry to clean up my biblatex file. Among other things, this function detects if there are non-ASCII characters in each bibtex/biblatex entry. My file has many non-ASCII characters that are exported via Latex to pdf with no problems because my setup is