Hello,
How can I change the default packages that are used in LaTeX export?
I'm running Org-mode version 8.2.6 (release_8.2.6-937-g60502a).
Thanks,
Roger
Thanks John, I now have what I want.
Roger
Thanks Eric. Filed away for future reference.
Roger
Hello,
I don't understand why this text:
===
case. The University requests that all medical notes be on letterhead,
be signed by the physician and include details on the following:
1. confirmation of the specific dates on which the student visited
the
Many thanks, Eric. That did indeed fix the problem.
Roger
Hello again,
On 05/05/14 12:31, John Kitchin wrote:
(setq org-latex-default-packages-alist
I thought I had this fixed, but apparently not.
Here's what I have in my .emacs:
(setq org-latex-default-packages-alist
'((AUTO inputenc t)
( lmodern nil)
(T1 fontenc nil)
( fixltx2e
hello,
On 05/06/14 11:48, John Kitchin wrote:
no, I think nil means it is not needed to make latex fragments of
equations.
John
OK, thanks. So, back to my original question: how do I control the list
of packages exported into a LaTeX document?
Thanks,
Roger
Thanks! Dunno why I was too stunned to try the obvious.
Cheers,
Roger
On 05/06/14 13:53, John Kitchin wrote:
just delete the packages you don't what from (setq
org-latex-default-packages-ali
st
'((AUTO inputenc t)
( lmodern nil)
(T1 fontenc nil)
( fixltx2e nil)
;(
Hello,
I'm working through examples in A Multi-Language Computing Environment for
Literate Programming and Reproducible Research by Shulte et al. J.
Stat. Software, 46/3, 2012.
This example compiles but results are not returned to the Org-mode buffer:
Hello Eric,
On 04/16/2013 04:15 PM, Eric Schulte wrote:
Roger Mason rma...@mun.ca writes:
Hello,
I'm working through examples in A Multi-Language Computing Environment for
Literate Programming and Reproducible Research by Shulte et al. J.
Stat. Software, 46/3, 2012.
This example compiles
Hello,
I'm finishing a paper that will need to be submitted to the publisher as
MS Word. I use neither Word nor Libre/OpenOffice. I need to have a
bibliography with cross-references from the text and intended to export
from org to ODT then Word. My bibliography file is in bibtex format.
hello Christian,
On 07/14/2013 05:07 PM, Christian Moe wrote:
Hi,
What seems to work for most people is exporting to latex, running
bibtex, and using one of these tools to convert to ODT:
- TeX4ht (the usual recommendation)
- Pandoc
or to convert to a format that ODT imports reasonably well:
Hello,
This:
#+CAPTION:
Microstructures of contact-metamorphism related melting and
crystallisation in K-feldspar-quartz domains
#+NAME: fig:microstructure-montage
[[./microstructure-montage.eps]]
produces this on export to LaTeX (org 8.0.3):
Microstructures of contact-metamorphism related
Hello Nicolas,
On 07/15/2013 07:52 AM, Nicolas Goaziou wrote:
Hello,
You need to put your caption on the same line as the #+CAPTION keyword.
You may also use multiple CAPTION keywords for better readability:
#+CAPTION: Microstructures of contact-metamorphism related melting
Hello,
I'd like to have images in the margin when exporting to LaTeX (or
creating a pdf via LaTeX). I see from a message on one of the TeX
mailing lists that this can be done like this:
\marginpar{\includegraphics[]{../images/Walkthrough_1-001.jpg}}
How can I get org (8.0.3 on linux) to
Hello again,
On 08/16/2013 10:45 AM, Suvayu Ali wrote:
You can adapt this to your needs:
http://article.gmane.org/gmane.emacs.orgmode/74876
It's in the FAQ now: http://orgmode.org/worg/org-faq.html#filter
Cheers,
Thanks for your response. I have it working somewhat:
(defun
Hello once more,
On 08/16/2013 11:34 AM, Roger Mason wrote:
(defun margin-graphics (contents backend info)
(when (eq backend 'latex)
(replace-regexp-in-string \\`includegraphics.+\\({.+}\\)
marginpar{includegraphics\1} contents)))
(add-to-list 'org-export-filter-link
Hello again,
On 09/05/2013 01:48 PM, Nicolas Goaziou wrote:
Hello,
Roger Mason rma...@mun.ca writes:
I have this at the top of an org file in order to put graphics in the
margin:
#+LATEX_HEADER: \usepackage[right=2in,left=0.5in]{geometry}
\usepackage{parskip}
#+BEGIN_SRC emacs-lisp
(defun
Hello,
On 09/05/2013 04:39 PM, Nicolas Goaziou wrote:
In this case, you need to remove \\` from your regexp. Regards,
That fixed it.
Many thanks.
Roger
This electronic communication is governed by the terms and conditions at
Hello,
I have this at the top of an org file in order to put graphics in the
margin:
#+LATEX_HEADER: \usepackage[right=2in,left=0.5in]{geometry}
\usepackage{parskip}
#+BEGIN_SRC emacs-lisp
(defun margin-graphics (contents backend info)
(when (eq backend 'latex)
Hello,
On 09/05/2013 04:15 PM, Nicolas Goaziou wrote:
#+LATEX_HEADER: \usepackage[right=2in,left=0.5in]{geometry}
#+LATEX_HEADER: \usepackage{parskip}
* Setup
:noexport:
#+BEGIN_SRC emacs-lisp :exports both
(defun
Hello,
On 09/06/2013 03:33 PM, Charles Berry wrote:
Roger Mason rmason at mun.ca writes:
Hello,
I'd like to create a superscript that preceeds a letter. I tried
^1Fred, ^1 Fred, ^{1}Fred and ^{1} Fred, to no avail.
Can this be done in org (8.0.3)? If so how?
[snip]
\nbsp{}^{1}Fred
Hello,
I'd like to create a superscript that preceeds a letter. I tried
^1Fred, ^1 Fred, ^{1}Fred and ^{1} Fred, to no avail.
Can this be done in org (8.0.3)? If so how?
Thanks,
Roger
This electronic communication is governed by the terms and conditions at
Hello,
Has anyone used Org to create exams? It would be useful to have the
value per question totalled to provide the total per section etc and to
be able to embed the answers in the exam and expose them in the final
document using some kind of conditional processing.
If anyone has done
Hello,
On 12/06/2013 03:53 PM, Roger Mason wrote:
Hello,
Has anyone used Org to create exams? It would be useful to have the
value per question totalled to provide the total per section etc and
to be able to embed the answers in the exam and expose them in the
final document using some
Hello,
Is there a way to italicise a block of text rather that just single
words? (org-mode 8.0.3).
Thanks,
Roger
Hello,
On 01/15/2014 01:20 PM, Alexander Baier wrote:
Hello Roger,
when answering a mail/post from the list, please Cc the list in your
response, so other members of the list can see your mail to.
On 2014-01-15 14:30 Roger Mason wrote:
But this does not:
/Perhaps, but [...] to replacement
Thank you Charles Berry and John Kitchin for your replies.
John Kitchin jkitc...@andrew.cmu.edu writes:
I have org-src-preserve-indentation set to t.
Charles C. Berry writes:
On Wed, 11 Mar 2015, Roger Mason wrote:
Hello,
This code:
#+BEGIN_SRC makefile :tangle Makefile
hello
Hello,
This code:
#+BEGIN_SRC makefile :tangle Makefile
hello: hello.f90
gfortran hello.f90
execute: hello
./a.out
clean:
rm -f a.out *.o
#+END_SRC
(stolen from John Kitchin) produces a Makefile with spaces instead of
tabs. I created the content in
Hello,
I have a short C++ program:
#+BEGIN_SRC cpp :flags -lm :results output
#include iostream
#include fstream
#include cmath// for ceil
#include cstdlib // for atof
double f (double fv, double o, int i) {
return fv / 2.0 + (1.0 - o) * fv * i;
}
int num
童俊翔 writes:
> How to add left superscripts without using additional packages in org-mode?
I use \nbsp{}^{1}.
Cheers,
Roger
Hello,
Martin Weigele writes:
> Hi, the subject line says it all, is there an easy way converting html to
> orgmode (not the other way round).
I think pandoc (http://pandoc.org/) can do that.
Cheers,
Roger
Hi Sharon,
Sharon Kimble writes:
> How can I have a second line for the author field in an org-mode export
> to latex please? For example -
>
> #+AUTHOR: Sharon
> #+AUTHOR2: Kimble
>
> But that doesn't work. I tried "#+AUTHOR: Sharon \n Kimble" but that
> doesn't
Hello Roland and Michael,
Thank you both for looking at this.
Roland Everaert writes:
> I will try to look at how I used org-sbe, but I do remind that I had to do
> the following (exerpt from a post on
> the list by me on the same subjet):
>
> "It works. But I had to set
Hello,
I have these code blocks:
#+BEGIN_SRC sh :tangle "skribilo_to_engine.sh"
#!/usr/local/bin/bash
infile=$3
engine=$2
skribilo=$1/skribilo
rm -rf $engine; mkdir -p $engine
result="Failed"
$skribilo -t
hello,
Roger Mason <rma...@mun.ca> writes:
> On export, the list numbering after the table reverts to 1. Is there a
> way to avoid this?
Found it. Sorry for the noise.
Roger
Hello,
I have a table in a list, like this:
2. Write stuff in the empty table:
# See http://orgmode.org/manual/LaTeX-specific-attributes.html to get
# predetermined width on export.
#+ATTR_LATEX: :align |p{2cm}|p{2cm}|
|--+|
| This | That |
|--+|
| ||
Hello,
When I try to edit a scheme fragment such this
Header:
#+BEGIN_SRC scheme :tangle "header.skb"
(document :title [A First Skribilo Block]
:author [Roger Mason]
#+END_SRC
using C-c ', org thinks it is an org table.
I am using GNU Emacs 25.1.1 (i386-portbld-freebs
Hello Nick,
Nick Dokos writes:
> Try with a minimal init file, avoiding all your customizations (other than
> loadin
> org and enabling scheme):
>
> emacs -q -l /path/to/minimal/init/file
>
> Does it still fail?
Yes, but in trying this out I discovered that the keybinding I
Hello John,
John Kitchin writes:
> I can't reproduce that. I wonder if you should try running
> org-element-cache-reset Sometimes I
> have seen org get confused when the cache is out of date. this usually
> happens when I have code
> that generates parts of the file.
Hello Marco,
Marco Wahl writes:
> Guess: You should add scheme to org-babel-load-languages. E.g. use M-x
> customize-variable.
Sorry, i should have mentioned that I tried that customisation without
success.
Cheers,
Roger
Hi Eric,
Eric S Fraga writes:
> Works fine for me with later version of org (and emacs).
Unfortunately, updating to Org mode version 9.0.3
(release_9.0.3-170-gfed1cf) did not make any difference.
Cheers,
Roger
Hello,
I need to include an image in a document to be exported to LaTeX.
Minimal example:
#+TITLE: test
* test section
[[macstuff.jpg]]
When running the export I get "user-error: Unable to resolve link:
nil". I've tried including the image as eps, to no avail.
Can someone tell me what I'm
John Kitchin writes:
> You aren't using a path. Try [[./macstuff.jpg]] instead.
>
That was it. Must have been away from Org for too long.
Thanks,
Roger
Hi Nicolas,
Nicolas Goaziou <m...@nicolasgoaziou.fr> writes:
> Roger Mason <rma...@mun.ca> writes:
>>
>> I need to include an image in a document to be exported to LaTeX.
> It should be:
>
> [[file:macstuff.jpg]]
Many thanks. As I said earlier, been away from Org for a while.
Cheers,
Roger
hello,
This python block:
#+BEGIN_SRC python :session true :results output
import numpy as np
from ase import Atoms
from ase.calculators.gulp import GULP, Conditions
quartz = Atoms(symbols='Si3O6', pbc=np.array([True,True,True], dtype=bool),
cell=np.array([[4.916, 0.0, 0.0],
Hello,
Roger Mason <rma...@mun.ca> writes:
> It compiles fine:
>
> c++ -std=c++11 -I/usr/local/include -L/usr/local/lib -lginac
> C-src-1053hn1.cpp
Solved by setting:
(setq org-babel-C++-compiler "c++")
I don't recall having had to do this before.
Phew! Very gla
Hello Thierry,
Thierry Banel writes:
> You may try to mimic org-babel in a shell, and see what happens.
>
> cd /tmp/babel-29466ws7
> g++ -std=c++11 -I/usr/local/include C-src-29466moy.cpp -L/usr/local/lib
> -lginac
>
> (of course you need to change the random names like
Hello,
Thierry Banel <tbanelweb...@free.fr> writes:
> On 25/11/2017 15:59, Roger Mason wrote:
>> This code compiles fine on command line but org-babel can't link it.
>>
>> #+BEGIN_SRC C++ :flags "-std=c++11 -I/usr/local/include" :libs
>> "-L
Hello,
Nick Dokos writes:
> All very good info, but why did the OP not have a g++? Using a
> non-linux operating system? Using a non-GNU tool chain? Inquiring
> minds want to know...
Running on FreeBSD 10.3, which uses clang/clang++ by default. That
said, I _do_ have gcc
Hello,
This code compiles fine on command line but org-babel can't link it.
#+BEGIN_SRC C++ :flags "-std=c++11 -I/usr/local/include" :libs
"-L/usr/local/lib -lginac"
#include
#include
using namespace std;
using namespace GiNaC;
int main () {
symbol a("a"), b("b"), x("x"), y("y");
Hello,
Nick Dokos writes:
> Please provide a backtrace.
This source block:
#+begin_src haskell :exports results
nanmol=[1,1,3,2,1,2,3]
ncatmol=[2,1,2,1,2,1,2]
#+end_src
produces the error in the attached backtrace
Steps to reproduce:
1. emacs -Q -l init
with init being:
Org-mode
Hello,
GNU Emacs 25.3.1 (i386-portbld-freebsd11.1, GTK+ Version
3.22.29) of 2018-04-26
Org mode version 9.1.13 (release_9.1.13-784-ged7d1d @
/home/rmason/.emacs.d/org-git/lisp/)
Attempting to run a haskell code block:
#+begin_src haskell :exports results
Hello,
Nick Dokos writes:
> Try evaluating
>
> (require 'inf-haskell)
>
> and then try evaluating the source code block again.
>
> Untested.
That seems to have helped, but now I'm getting:
‘org-babel-script-escape’ expects a string
Many thanks,
Roger
Hello,
I just attempted to use the koma-letter module but it fails:
concat: Symbol’s function definition is void: org-latex--make-preamble
I'm guessing some other symbol has replaced it, but what?
Cheers,
Roger
GNU Emacs 25.3.1 (amd64-portbld-freebsd11.1, GTK+ Version 3.22.29) of
2018-04-24
Hello,
Roger Mason writes:
> I just attempted to use the koma-letter module but it fails:
>
> concat: Symbol’s function definition is void: org-latex--make-preamble
>
> I'm guessing some other symbol has replaced it, but what?
>
Found I was using version of ox-koma-letter.el
Hello,
An off topic problem. I'm asking here because I noticed this problem
first in this list, but it has spread.
I read e-mail using gnus (v5.13) in emacs (25.3.1) on FreeBSD (10.3).
Some months ago I noticed some messages in this list displaying with
sender 'nobody' and subject '(none)' in
Hello Eric,
Eric S Fraga writes:
> That should have been @>, not @<.
| Data | a |
|---+|
| mic_2_in_648_cell | #ERROR |
#+tblfm: $2=remote($1,vmean(@2..@>))
and 'Cells in the region copied, use M-x org-table-paste-rectangle to
paste them in a table.'
Hello,
I _think_ this question has a simple answer, but I cannot find it.
I need the mean of a column in a remote table. My current attempt looks
like this:
| Data | a |
|---+---|
| mic_2_in_648_cell | |
#+tblfm: $2=remote($1,vmean(@2..@-1))
#+name:
Hello Eric,
Eric S Fraga writes:
> Umm, I think you want to do the mean of the remote entries so try:
> vmean(remote($1,@2..@>)) but I also wonder whether you need to specify
> the column as well for remote references? At least, when I have done
> this, I have specified both rows and columns,
Hello,
I want to output the result of the evaluation of a (python) source block
to a (graphics) file and have a link to the file inserted in the buffer.
Here is the code:
#+begin_src python :results value file :file scaleplot02.pdf :exports results
:var data=test
import matplotlib.pyplot as
Hello John,
John Kitchin writes:
> I think you can use something like this:
>
> #+BEGIN_SRC python :results output file :var fname="test.png"
> import matplotlib.pyplot as plt
> import io
>
> f = io.StringIO()
> plt.plot([1, 2, 3, 17])
> plt.savefig(fname)
> print(fname, end='')
> #+END_SRC
>
>
Hello John,
John Kitchin writes:
> you probably figured out the "import io" and "f = io..." line are not
> necessary here.
Indeed.
> I couldn't figure out a reasonable way to use :results graphics link
> that didn't result in repeating the filename more than desired. These
> also both work,
Hello,
stardiviner writes:
> Roger Mason writes:
>
>> Hello,
>>
>> I want to output the result of the evaluation of a (python) source block
>> to a (graphics) file and have a link to the file inserted in the buffer.
>> #+begin_src python :results value
Hello,
Ken Mankoff writes:
>
> What about :var file="scaleplot02.pdf".
That was my starting point, but the resulting link is prefixed by ':'
Perhaps I should upgrade org.
Cheers,
Roger
Hello again,
stardiviner writes:
> Roger Mason writes:
>
>> Hello,
>>
>> I want to output the result of the evaluation of a (python) source block
>> to a (graphics) file and have a link to the file inserted in the buffer.
>
> For this, you should try upd
Hello,
I using Org mode version 9.2.3 (release_9.2.3-390-gfb5091 @
/home/rmason/.emacs.d/org-git/lisp/) in GNU Emacs 26.3 (build 1,
amd64-portbld-freebsd11.3, X toolkit, Xaw3d scroll bars).
Here is an ECM:
#+begin_src shell :results raw replace
#!/usr/bin/env zsh
mkdir -p Supercell
for i in 1
Hello,
I'd like to be able to hide results, for example when I expect the
them to span many lines. I know I can hit =tab= on the #+RESULTS: line,
but I'd like to be able to set this automatically.
My most recent effort:
#+name: hideresults
#+begin_src emacs-lisp :results none :exports none
Hello,
John Kitchin writes:
> This is doable with a hook and advice I think. The hook will hide the
> results if you use :results hide in the header.
>
> I had to use the advice to remove the results before hand, so that you
> toggle the visibility off. This is pretty lightly tested. you could
>
Hello Charles & William,
Berry, Charles writes:
> data.frame($data) is not valid R syntax. If you are new to R doing some
> tutorials will help.
>
> I suggest you use C-c C-v C-v (org-babel-expand-src-block) to see what the R
> code is and debug the result given in the the *Org Babel
Hello,
I have an SQL source block that returns this:
#+RESULTS: query
|date | jid | te | rgkmax |
time | elapsed |
Hello Uwe,
Uwe Brauer writes:
> I obtain 0.0 in the last column, this looks bad, any idea how to avoid
> it?
I think you can use a printf format specification in the formula.
Cheers,
Roger
Hello Pedro,
Pedro Bruel writes:
> There's a typo on your source block header, it should be "output graphics",
> this would probably produce the output you're getting now.
Thank you! You saved my sanity!
Roger
Hello,
I want graphics output from R:
#+begin_src R :results output grahics file :file coa_vs_a.pdf :exports results
library(tidyverse)
library(RPostgreSQL)
drv <- dbDriver("PostgreSQL")
con <- dbConnect(drv, user="rmason",dbname="test")
rs <- dbSendQuery(con,"with CTE as (select
Hello,
I need to extract a column from a table to use as input to a source
block. I want the extracted column to be returned as a column but it is
returned as a row. The following illustrates the problem:
#+name: s1
| scale | scale1 | scale3 | jid |
| - | 1.00402 | 0.952329 | 1632 |
|
Hello Juan,
Juan Manuel Macías writes:
> #+name: s1
> | scale | scale1 | scale3 | jid |
> | - | 1.00402 | 0.952329 | 1632 |
> | - | 1.00402 | 0.962247 | 1633 |
>
> #+begin_src emacs-lisp :var data=s1 col=3
> (let* ((column (mapcar (lambda (r) (format "%s" (nth col r))) data)))
Hello Greg,
Greg Minshall writes:
> Roger,
>
>> Is there some means of changing 'data=s1[,3]' to accomplish this?
>
> there may be some more formal way (and i think some of the
> data.frame.alternative packages, like data.table:: or dplyr::, have
> their own ways), but you might try transposing
Hello,
Maxim Nikulin writes:
> Notice that you can get vertical representation of results as a list
> #+begin_src emacs-lisp :results list
>
> The following is a variation of a recipe suggested by Juan Manuel:
>
> #+name: to-column
> #+begin_src emacs-lisp :var lst=()
>(mapcar #'list lst)
>
Hello Juan,
Juan Manuel Macías writes:
> You're welcome. Just a minor fix: although the code works fine,
> naturally the asterisk in `let' was unnecessary. This is a new version
> with the code explained, in case you find it useful:
>
> #+begin_src emacs-lisp :var data=s1 col=3
> (let* (
>
Hello,
I want to run stack ghci from haskell blocks in org-mode. For the
task at I need to start ghci with command line option
-XFlexibleContexts. I have this in my org-mode buffer:
#+begin_src emacs-lisp :results none
(setq haskell-process-type 'stack-ghci)
(setq
Immanuel Litzroth writes:
> Just going by what I see, not having tried it:
> (setq haskell-process-args-stack-ghci (list "--ghci-options"
> "-XFlexibleContexts"))
>
> In your version the process gets 1 argument (with a space in it). In
> my version it gets 2 args.
> Immanuel
Indeed, that was
Hello Ihor,
Ihor Radchenko writes:
> Roger Mason writes:
>
>> File is missing: Cannot open load file, No such file or directory, org
>
> So, your elpa.el config file is loading helm-org-rifle, which loads org
> before you set load-path to the new version of Org. You ne
Hello,
I indvertently issued 'rm -rf *' in my home directory an lost some files
a couple of days ago. I was able to restore most from backup, but
something is missing (or not working) in my org setup.
I have an org-git directory in .emacs.d that reports as 'org-version:
9.5.4
Hello,
I want to plot energy against variable from this table.
#+plot: title "Final energy vs nkpt" ind:5 deps:(6) type:2d with:points
| workdir | calcdir| volume| iscl |coa
| variable | energy |
Hello Ihor,
Ihor Radchenko writes:
> You need to have "gnuplot" Emacs package installed to be able to use
> org-plot and ob-gnuplot.
I had checked those were installed before posting. What I had not
checked (duh) was that gnuplot would start and run. There was a simple
linkage problem
Hello,
I wish to compile & run this source block in org-mode:
#+name: gnc_cav
#+header: :includes
#+header: :libs -L/usr/local/lib -lginac -lcln
#+header: :flags -std=c++17
#+header: :namespaces std GiNaC
# #+header: :var table=
#+header: :var job="vectors" :var vol=113.13115406160385926 :var
Hello,
tbanelwebmin writes:
> You may try:
> #+header: :includes '("" "")
>
> Also, you have this commented line:
> # #+header: :var table=
> It seems to break the #+header: chain
> Just remove it.
>
> By the way, to figure out future compilation problems, you may click on the
> error:
>
Hello,
I installed ob-async from MELPA. It does not seem to work. For example
the following simple source block is run synchronously, i.e., emacs
shows the cursor as a watch and it is not possible to move point, or to
type, until the source block completes.
#+begin_src ruby :tangle test.rb
Hello again,
Roger Mason writes:
...snip...
> Is ob-async known to be broken?
No. The user is broken.
It seems ob-async must be required in the file in which it is to be used
(I had it in my init file). I ran into a further problem that is
resolved using:
(defun no-hide-overlays (o
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