Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv30392
Modified Files:
clipper.info coot.info gpp4.info mmdb.info ssm.info
Log Message:
update for stable coot and dependencies
Index: gpp4.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci/gpp4.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- gpp4.info 16 Sep 2008 16:28:00 -0000 1.1
+++ gpp4.info 21 Sep 2009 07:18:04 -0000 1.2
@@ -1,18 +1,18 @@
Package: gpp4
-Version: 1.0.4
-Revision: 5
+Version: 1.1.0
+Revision: 1
Maintainer: W. G. Scott <wgsc...@users.sourceforge.net>
-# Maintainer: Morten Kjeldgaard <m...@bioxray.dk>
DescPackaging: <<
Based on package created by Morten Kjeldgaard <m...@bioxray.dk> with minor
edits to conform to standard Fink packaging requirements.
<<
Description: Library providing CCP4 functionality
License: LGPL
-Source: ftp://ftp.bioxray.au.dk/pub/mok/src/gpp4-%v.tar.gz
-Source-MD5: 48931781425a5b79a8255ebefaed24b3
+Source: http://code.launchpad.net/%n/trunk/%v/+download/gpp4-%v.tar.gz
+Source-MD5: 593383083af6cb5f05679b9adc7a14ab
NoSourceDirectory: false
-Depends: %N-shlibs (= %v-%r)
+Depends: %N-shlibs (= %v-%r), gcc44-shlibs (>= 4.4.1-1000)
+BuildDepends: mmdb-dev (>= 1.19-12), ssm-dev (>= 0.1-12), gcc44 (>= 4.4.1-1000)
BuildDependsOnly: true
HomePage: http://www.bioxray.dk/~mok/gpp4
DocFiles: README AUTHORS NEWS COPYING
@@ -42,6 +42,9 @@
incurring excessive overheads.
<<
CompileScript: <<
+LDFLAGS="-L%p/lib/gcc4.4/lib -L%p/lib -L/usr/lib" \
+CXX="%p/lib/gcc4.4/bin/g++" \
+CC="%p/lib/gcc4.4/bin/gcc" \
./configure --prefix=%p
make
<<
@@ -52,17 +55,16 @@
Package: %N-shlibs
Files: <<
lib/libgpp4.0.dylib
- lib/libgpp4.0.0.0.dylib
<<
Shlibs: <<
- %p/lib/libgpp4.0.dylib 1.0.0 %n (>= 1.0.4-2)
+ %p/lib/libgpp4.0.dylib 1.0.0 %n (>= 1.0.0-1)
<<
<<
SplitOff2: <<
Package: %N-dev
BuildDependsOnly: True
-Conflicts: ccp4-onlylibs-dev
-Replaces: ccp4-onlylibs-dev
+Conflicts: ccp4-onlylibs-dev, ccp4-dev
+Replaces: ccp4-onlylibs-dev, ccp4-dev
Files: <<
lib/*.a
lib/*.la
Index: mmdb.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci/mmdb.info,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -d -r1.2 -r1.3
--- mmdb.info 12 May 2009 15:23:33 -0000 1.2
+++ mmdb.info 21 Sep 2009 07:18:04 -0000 1.3
@@ -1,7 +1,6 @@
Package: mmdb
Version: 1.21
-Revision: 1
-# Maintainer: Morten Kjeldgaard <m...@bioxray.dk>
+Revision: 12
Maintainer: W. G. Scott <wgsc...@users.sourceforge.net>
DescPackaging: <<
Based on package created by Morten Kjeldgaard <m...@bioxray.dk> with minor
@@ -12,10 +11,11 @@
HomePage: http://www.ebi.ac.uk/~keb/cldoc/
Source: http://www.ebi.ac.uk/~keb/cldoc/downloads/%n-%v.tar.gz
Source-MD5: 1cc8cbe91f6702a324735e333a6e20b2
-Depends: %N-shlibs (= %v-%r)
+Depends: %N-shlibs (= %v-%r), gcc44-shlibs (>= 4.4.1-1000)
+BuildDepends: libtool14, gcc44 (>= 4.4.1-1000)
BuildDependsOnly: true
DescDetail: <<
-MMDB is CCP4's macromolecular coordinate library, written by Eugene
+MMDB is CCP4\'s macromolecular coordinate library, written by Eugene
Krissinel of the EBI. The Coordinate Library is designed to assist
CCP4 developers in working with coordinate files. The major source of
coordinate information remains the PDB files, although more
@@ -23,7 +23,7 @@
The Library features working with both file formats plus an internal
binary format portable between different platforms. This is achieved
-at uniformity of the Library's interface functions, so that there is
+at uniformity of the Library\'s interface functions, so that there is
no difference in handling different formats.
The Library provides various high-level tools for working with
@@ -34,6 +34,9 @@
coordinate-related operations.
<<
CompileScript: <<
+LDFLAGS="-L%p/lib/gcc4.4/lib -L%p/lib -L/usr/lib" \
+CXX="%p/lib/gcc4.4/bin/g++" \
+CC="%p/lib/gcc4.4/bin/gcc" \
./configure --prefix=%p
make
<<
@@ -49,8 +52,8 @@
Package: %N-dev
Depends: %N (= %v-%r)
BuildDependsOnly: True
-Conflicts: ccp4-onlylibs-dev
-Replaces: ccp4-onlylibs-dev
+Conflicts: ccp4-onlylibs-dev, ccp4-dev
+Replaces: ccp4-onlylibs-dev, ccp4-dev
Files: <<
include/mmdb/*.h
lib/*.a
Index: clipper.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci/clipper.info,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- clipper.info 21 Sep 2009 05:16:57 -0000 1.3
+++ clipper.info 21 Sep 2009 07:18:04 -0000 1.4
@@ -1,14 +1,27 @@
Package: clipper
Epoch: 1
-Version: 2.0.3
-Revision: 5
-BuildDepends: fftw (>= 2.1.5-1010) | fftw-mpi (>= 2.1.5-1010), mmdb-dev (>=
1.12-5), ssm-dev (>= 0.1-5), gpp4-dev (>= 1.0.4-5)
-Depends: %n-shlibs (>= 1:%v-%r), fftw-shlibs (>= 2.1.5-1010) | fftw-mpi-shlibs
(>= 2.1.5-1010), mmdb-shlibs (>= 1.0.10-5), ssm-shlibs (>= 0.1-5), gpp4-shlibs
(>= 1.0.4-5)
+Version: 2.1
+Revision: 12
+BuildDepends: <<
+fftw (>= 2.1.5-1010) | fftw-mpi (>= 2.1.5-1010),
+mmdb-dev (>= 1.19-12),
+ssm-dev (>= 0.1-12),
+gpp4-dev (>= 1.0.4-12),
+gcc44 (>= 4.4.1-1000)
+<<
+Depends: <<
+%n-shlibs (>= 1:%v-%r),
+fftw-shlibs (>= 2.1.5-1010) | fftw-mpi-shlibs (>= 2.1.5-1010),
+mmdb-shlibs (>= 1.19-12),
+ssm-shlibs (>= 0.1-12),
+gpp4-shlibs (>= 1.0.4-12),
+gcc44-shlibs (>= 4.4.1-1000)
+<<
Maintainer: W. G. Scott <wgsc...@users.sourceforge.net>
Homepage: http://www.ysbl.york.ac.uk/~cowtan/clipper/clipper.html
-Source: http://www.ysbl.york.ac.uk/~cowtan/%n/%n20ac.latest.tar.gz
-Source-MD5: cf5746cd7e040180c1e4cb429c7b2ac1
-NoSourceDirectory: true
+Source: http://www.ysbl.york.ac.uk/~cowtan/%n/%n-%v-090714-ac.tar.gz
+Source-MD5: 25124efb8d251cedfbd23f4b06851e47
+SourceDirectory: %n-%v
DocFiles: README AUTHORS NEWS COPYING
Description: Object-oriented crystallographic libraries
DescDetail: <<
@@ -18,13 +31,21 @@
for new crystallographic software, which will allow the full power of
modern programming techniques to be exploited by the developer.
<<
-SetCFLAGS: -fno-strict-aliasing -I%p/include -I%p/include/mmdb
-I%p/include/ssm -I%p/include/gpp4/ccp4 -I/usr/include -I/usr/include/sys
-SetLDFLAGS: -L/usr/lib
+SetCXXFLAGS: -fno-strict-aliasing -I%p/include -I%p/include/mmdb
-I%p/include/ssm -I%p/include/gpp4 -I%p/include/gpp4/ccp4
License: LGPL
CompileScript: <<
- LDFLAGS="-L%p/lib"
+#!/bin/bash -evf
+ LDFLAGS="-L%p/lib/gcc4.4/lib -L%p/lib -L/usr/lib" \
+ CXX="%p/lib/gcc4.4/bin/g++" \
+ CC="%p/lib/gcc4.4/bin/gcc" \
./configure --prefix=%p --enable-shared --with-gpp4=%p --with-mmdb=%p
--with-fftw=%p --enable-mmdb --enable-minimol --enable-cif --enable-cns
--enable-gpp4
perl -pi -e 's|examples||g' Makefile
+ # Fix for 10.4 libtool issue
+ if [[ $(sw_vers -productVersion) < 10.5 ]]; then
+ sed -e '/verstring=/s/\${wl}//g' < libtool > libtool.fixed
+ mv libtool.fixed libtool
+ fi
+ #
make
<<
InstallScript: <<
@@ -43,21 +64,21 @@
lib/libclipper-phs.2.*dylib
<<
Shlibs: <<
- %p/lib/libclipper-ccp4.2.dylib 3.0.0 %n (>= 1:2.0.3-4)
- %p/lib/libclipper-cif.2.dylib 3.0.0 %n (>= 1:2.0.3-4)
- %p/lib/libclipper-cns.2.dylib 3.0.0 %n (>= 1:2.0.3-4)
- %p/lib/libclipper-contrib.2.dylib 3.0.0 %n (>= 1:2.0.3-4)
- %p/lib/libclipper-core.2.dylib 3.0.0 %n (>= 1:2.0.3-4)
- %p/lib/libclipper-minimol.2.dylib 3.0.0 %n (>= 1:2.0.3-4)
- %p/lib/libclipper-mmdb.2.dylib 3.0.0 %n (>= 1:2.0.3-4)
- %p/lib/libclipper-phs.2.dylib 3.0.0 %n (>= 1:2.0.3-4)
+ %p/lib/libclipper-ccp4.2.dylib 3.0.0 %n (>= 1:2.1-1)
+ %p/lib/libclipper-cif.2.dylib 3.0.0 %n (>= 1:2.1-1)
+ %p/lib/libclipper-cns.2.dylib 3.0.0 %n (>= 1:2.1-1)
+ %p/lib/libclipper-contrib.2.dylib 3.0.0 %n (>= 1:2.1-1)
+ %p/lib/libclipper-core.2.dylib 3.0.0 %n (>= 1:2.1-1)
+ %p/lib/libclipper-minimol.2.dylib 3.0.0 %n (>= 1:2.1-1)
+ %p/lib/libclipper-mmdb.2.dylib 3.0.0 %n (>= 1:2.1-1)
+ %p/lib/libclipper-phs.2.dylib 3.0.0 %n (>= 1:2.1-1)
<<
<<
SplitOff2: <<
Package: %N-dev
BuildDependsOnly: True
-Conflicts: ccp4-onlylibs-dev
-Replaces: ccp4-onlylibs-dev
+Conflicts: ccp4-onlylibs-dev, ccp4-dev
+Replaces: ccp4-onlylibs-dev, ccp4-dev
Files: <<
lib/*.a
lib/*.la
Index: coot.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci/coot.info,v
retrieving revision 1.20
retrieving revision 1.21
diff -u -d -r1.20 -r1.21
--- coot.info 26 Aug 2009 04:36:46 -0000 1.20
+++ coot.info 21 Sep 2009 07:18:04 -0000 1.21
@@ -1,17 +1,14 @@
Package: coot
-Version: 0.5.2
+Version: 0.6-pre-1-revision-2327
Revision: 1
-Architecture: i386, powerpc
-Distribution: 10.4, 10.5
-SourceDirectory: %n-%v
+SourceDirectory: %n-0.6-pre-1
GCC: 4.0
-Source: http://www.ysbl.york.ac.uk/~emsley/software/pre-release/%n-%v.tar.gz
-Source-MD5: 9a67992eda01c96753503d13325dd793
-Source2: http://www.ysbl.york.ac.uk/refmac/data/refmac5.4_dictionary.tar.gz
-Source2-MD5: 14b965dc5ab9762c819f632c133998b9
+Source: http://www.biop.ox.ac.uk/%n/software/source/pre-releases/%n-%v.tar.gz
+Source-MD5: d31eb6917d0b23678ba919a31e5f8d59
+Source2: http://www.ysbl.york.ac.uk/refmac/data/refmac_dictionary.tar.gz
+Source2-MD5: d6eab829728608d0b8eade38debcedd3
Source3:
http://www.ysbl.york.ac.uk/~emsley/software/extras/reference-structures.tar.gz
Source3-MD5: 257ab90d44f1c877ada96720dbb87c13
-#
###############################################################################
Description: Crystallographic molecular graphics
Conflicts: guile, guile-shlibs
@@ -31,19 +28,21 @@
include \"%p/share/themes/Glossy_P/gtk-2.0/gtkrc\"
.
Install povray and raster3d fink packages to use the F8 key for producing
-ray-traced images.
+ray-traced images. You may have to re-map the Spaces.app keybinding.
<<
###############################################################################
Recommends: povray, ccp4, raster3d
BuildDepends: <<
- clipper-dev (>= 1:2.0.3-6) ,
- clipper (>= 1:2.0.3-6) ,
+ fink (>= 0.24.12) ,
+ clipper-dev (>= 1:2.1-11) ,
+ clipper (>= 1:2.1-11) ,
+ gcc44 (>= 4.4.0-1000) ,
gpp4-dev (>= 1.0.4-5) ,
- gpp4 (>= 1.0.4-5) ,
- mmdb-dev (>= 1.19-1) ,
- mmdb (>= 1.19-1) ,
- ssm-dev (>= 0.1-6) ,
- ssm (>= 0.1-6) ,
+ gpp4 (>= 1.0.4-10) ,
+ mmdb-dev (>= 1.21-10) ,
+ mmdb (>= 1.21-10) ,
+ ssm-dev (>= 0.1-10) ,
+ ssm (>= 0.1-10) ,
atk1 (>= 1.20.0-1) ,
cairo (>= 1.6-1) ,
expat1 ,
@@ -51,7 +50,6 @@
fontconfig2-dev (>= 2.4.1-1) ,
freetype219 (>= 2.3.5-1) ,
freeglut ,
- gail18-dev ,
giflib ,
glib2-dev (>= 2.14.0-1) ,
glitz ,
@@ -75,10 +73,11 @@
libpng3 ,
librsvg2-gtk (>= 2.20.0-1) ,
libtool14 ,
+ libxml2 ,
pango1-xft2-ft219-dev (>= 1.18.4-1) ,
pixman (>= 0.10.0-1) ,
- pygtk2-gtk-py25-dev ,
- python25 ,
+ pygobject2-py26-dev ,
+ python26 ,
swig ,
x11-dev ,
xft2-dev
@@ -86,14 +85,15 @@
#
# Note: gtkglext1 IS required at runtime for stereo functionality
Depends: <<
- clipper-shlibs (>= 1:2.0.3-6) ,
- gpp4-shlibs (>= 1.0.4-5) ,
- mmdb-shlibs (>= 1.19-1) ,
- ssm-shlibs (>= 0.1-6) ,
+ clipper-shlibs (>= 1:2.1-11) ,
+ gpp4-shlibs (>= 1.0.4-10) ,
+ mmdb-shlibs (>= 1.21-10) ,
+ ssm-shlibs (>= 0.1-10) ,
atk1-shlibs (>= 1.20.0-1) ,
coot-shlibs (= %v-%r) ,
fftw-shlibs | fftw-mpi-shlibs ,
freeglut-shlibs ,
+ gcc44-shlibs (>= 4.4.0-1000) ,
giflib-shlibs ,
glib2-shlibs (>= 2.14.0-1) ,
gmp-shlibs ,
@@ -122,16 +122,17 @@
libtiff-shlibs ,
libtool14-shlibs ,
librsvg2-gtk (>= 2.20.0-1) ,
+ libxml2-shlibs ,
pango1-xft2-ft219-shlibs (>= 1.18.4-1) ,
- pygtk2-gtk-py25 ,
- python25 ,
+ python26 ,
x11
<<
#
###############################################################################
BuildDependsOnly: false
+NoSetCPPFLAGS: true
NoSetLDFLAGS: true
-# Patch: %n.patch
+#
PatchScript: <<
#!/bin/zsh -exf
perl -pi.bak -e 's|use-modules \(goosh\)|use-modules \(goosh goosh\)|g'
scheme/coot-utils.scm
@@ -142,7 +143,7 @@
# This is required to get the map displayed on both sides of side-by-side
stereo
echo "(set-display-lists-for-maps 0)" >>| scheme/group-settings.scm
# Hopefully temporary hacks to configure
-perl -pi.bak -e 's|have_goosh=no|have_goosh=yes|g' configure
+perl -pi -e 's|have_goosh=no|have_goosh=yes|g' configure
perl -pi -e "s|guile-config|guile-1.8-config|g" configure
perl -pi -e 's|\(goosh\)|\(goosh goosh\)|g' configure
perl -pi -e 's|lccp4c|lgpp4|g' configure
@@ -153,34 +154,41 @@
--with-fftw=%p --with-gnomecanvas-prefix=%p --with-gtk2 --with-glut-prefix=%p
\
--with-guile-gtk --with-guile-gtk-prefix=%p --with-gl-prefix=/usr/X11R6
\
--with-imlib-prefix=%p --with-gtkgl-prefix=%p --with-glib-prefix=%p
\
---with-gsl-prefix=%p --with-guile --with-python
+--with-gsl-prefix=%p --with-guile --with-python=%p --with-pygtk=%p
<<
###############################################################################
CompileScript: <<
-#!/bin/zsh -efv
-export
PATH=%p/bin:%p/share/guile/1.8/scripts/binoverride:$PATH:%p/share/guile/1.8/goosh
+#!/bin/bash -efv
+alias python=%p/bin/python2.6
+export PYTHON=%p/bin/python2.6
+export python=%p/bin/python2.6
+export
PATH=$PWD/bin:%p/bin:%p/share/guile/1.8/scripts/binoverride:$PATH:%p/share/guile/1.8/goosh
export SED=/usr/bin/sed
export GDK_USE_XFT='1'
export COOT_REFMAC_LIB_DIR=%p/share/coot/lib
export
PKG_CONFIG_PATH=%p/lib/pango-ft219/lib/pkgconfig:%p/lib/fontconfig2/lib/pkgconfig:%p/lib/freetype219/lib/pkgconfig:%p/lib/pkgconfig:${PKG_CONFIG_PATH}
-FLIBS="-L%p/lib" \
-CPPFLAGS="-I%p/include/mmdb -I%p/include/ssm -I%p/include/gpp4/ccp4
-I%p/include/clipper -I%p/include -I/usr/X11R6/include" \
-LDFLAGS="-Wl,-dylib_file,%p/lib/libsfftw.2.0.7.dylib:%p/lib/libsrfftw.2.0.7.dylib:%p/lib/pango-ft219/lib/libpango-1.0.dylib:%p/lib/pango-ft219/lib/libpangocairo-1.0.dylib:%p/lib/pango-ft219/lib/libpangoft2-1.0.dylib:%p/lib/pango-ft219/lib/libpangox-1.0.dylib:%p/lib/pango-ft219/lib/libpangoxft-1.0.dylib
-L%p/lib/pango-ft219/lib -L%p/lib -L/usr/lib -lSystemStubs -flat_namespace
-L/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries" \
-CXX="/usr/bin/g++" \
-CC="/usr/bin/gcc" \
-PYTHON=%p/bin/python2.5 \
-python=%p/bin/python2.5 \
-DYLD_LIBRARY_PATH="" \
-./configure %c
+ FLIBS="-L%p/lib/gcc4.4/lib -L%p/lib" \
+ CPPFLAGS="-I%p/include/libglade-2.0/glade -I%p/include/libglade-2.0
-I%p/include/python2.6 -I%p/include/mmdb -I%p/include/ssm
-I%p/include/gpp4/ccp4 -I%p/include/clipper -I%p/include -I/usr/X11R6/include" \
+
LDFLAGS="-Wl,-dylib_file,%p/lib/python2.6/config/libpython2.6.dylib:%p/lib/libsfftw.2.0.7.dylib:%p/lib/libsrfftw.2.0.7.dylib:%p/lib/pango-ft219/lib/libpango-1.0.dylib:%p/lib/pango-ft219/lib/libpangocairo-1.0.dylib:%p/lib/pango-ft219/lib/libpangoft2-1.0.dylib:%p/lib/pango-ft219/lib/libpangox-1.0.dylib:%p/lib/pango-ft219/lib/libpangoxft-1.0.dylib
-L%p/lib/pango-ft219/lib -L%p/lib -L%p/lib/gcc4.4/lib -L/usr/lib -lSystemStubs
-flat_namespace
-L/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries" \
+ DYLD_LIBRARY_PATH="" \
+ ./configure %c
#
# Force coot to link to single-precision fftw libraries. The double-precision
libraries
# cause coot to crash.
-perl -pi -e 's|lrfftw |lsrfftw |g' **/Makefile
-perl -pi -e 's|lfftw |lsfftw |g' **/Makefile
+/bin/zsh -c 'perl -pi -e "s|lrfftw |lsrfftw |g"
**/Makefile'
+/bin/zsh -c 'perl -pi -e "s|lfftw |lsfftw |g"
**/Makefile'
perl -pi -e 's|include <rfftw.h>|include <srfftw.h>|g'
surface/CXXFFTSolventMap.h
#
+if [[ $(sw_vers -productVersion) < 10.5 ]]; then
+ # Fix libtool compatibility issues
+ sed -e '/verstring=/s/\${wl}//g' < libtool > libtool.fixed
+ mv libtool.fixed libtool
+fi
+#
+
+
#remake the src/coot_wrap_python.cc and src/coot_wrap_guile.cc files
- /bin/rm -f **/coot_wrap_**.cc
+ /bin/zsh -c '/bin/rm -f **/coot_wrap_**.cc'
cd src
touch c-interface-database.hh
make coot_wrap_guile.cc
@@ -192,7 +200,7 @@
###############################################################################
InstallScript: <<
#!/bin/zsh -efv
-export PATH=%p/bin:%p/share/guile/1.8/scripts/binoverride:$PATH
+export PATH=$PWD/bin:%p/bin:%p/share/guile/1.8/scripts/binoverride:$PATH
export SED=/usr/bin/sed
export COOT_REFMAC_LIB_DIR=%p/share/coot/lib
cp src/coot.py python/coot.py
@@ -211,6 +219,7 @@
#
mkdir -p %i/share/coot/etc
mkdir -p %i/share/coot/python
+mkdir -p %i/bin
cp src/coot.py %i/share/coot/python/coot.py
cp -R setup %i/share/coot/.
# This installs the refmac monomer library
@@ -221,23 +230,25 @@
cp -R * %i/share/coot/etc/.
# Get rid of spurious, wrongly placed directory
rm -rf %i/setup
-# The new wrapper creates problems. Get rid of it.
-# Clean up the rest of the mess.
+# The original wrapper creates problems. Get rid of it.
+# Replace with a new wrapper to set the required PYTHONPATH variable
+# and a few others as follows:
/bin/rm -f %i/bin/coot
-cp %i/bin/coot-real %i/bin/coot
-/bin/rm -f %i/bin/coot-real
+echo '#!/bin/sh -f ' > %i/bin/coot
+echo "export COOT_REFMAC_LIB_DIR=%p/share/coot/lib" >> %i/bin/coot
+echo "export COOT_PYTHON_DIR=%p/share/coot/python" >> %i/bin/coot
+echo "export
PYTHONPATH=%p/lib/python2.6/site-packages:%p/lib/python2.6/site-packages/gtk-2.0:%p/share/coot/python:\$PYTHONPATH"
>> %i/bin/coot
+echo "%p/bin/coot-real \"\...@\" " >> %i/bin/coot
+chmod a+x %i/bin/coot
+# Clean up the rest of the mess.
/bin/rm -rf %i/include
/bin/rm -rf %i/**/.libs
<<
-RuntimeVars: <<
-COOT_REFMAC_LIB_DIR: %p/share/coot/lib
-COOT_PYTHON_DIR: %p/share/coot/python
-<<
###############################################################################
DocFiles: README AUTHORS NEWS COPYING ABOUT-NLS BUGS TODO
License: GPL
Maintainer: W. G. Scott <wgsc...@users.sourceforge.net>
-Homepage: http://www.ysbl.york.ac.uk/~emsley/coot/doc/user-manual.html
+Homepage: http://www.biop.ox.ac.uk/coot
###############################################################################
#
SplitOff: <<
@@ -248,34 +259,34 @@
lib/libcootaneer.0*.dylib
<<
Shlibs: <<
- %p/lib/libccp4mg-surface.0.dylib 1.0.0 %n (>= 0.5.2-1)
- %p/lib/libccp4mg-utils.0.dylib 1.0.0 %n (>= 0.5.2-1)
- %p/lib/libcoot-analysis.0.dylib 1.0.0 %n (>= 0.5.2-1)
- %p/lib/libcoot-AngleInfo.0.dylib 1.0.0 %n (>= 0.5.2-1)
- %p/lib/libcoot-atomutils.0.dylib 1.0.0 %n (>= 0.5.2-1)
- %p/lib/libcoot-cabuild.0.dylib 1.0.0 %n (>= 0.5.2-1)
- %p/lib/libcoot-compat.0.dylib 1.0.0 %n (>= 0.5.2-1)
- %p/lib/libcoot-coord-extras.0.dylib 1.0.0 %n (>= 0.5.2-1)
- %p/lib/libcoot-coord-utils.0.dylib 1.0.0 %n (>= 0.5.2-1)
- %p/lib/libcoot-coords.0.dylib 1.0.0 %n (>= 0.5.2-1)
- %p/lib/libcoot-db-main.0.dylib 1.0.0 %n (>= 0.5.2-1)
- %p/lib/libcoot-geometry.0.dylib 1.0.0 %n (>= 0.5.2-1)
- %p/lib/libcoot-high-res.0.dylib 1.0.0 %n (>= 0.5.2-1)
- %p/lib/libcoot-ideal.0.dylib 1.0.0 %n (>= 0.5.2-1)
- %p/lib/libcoot-isosurface.0.dylib 1.0.0 %n (>= 0.5.2-1)
- %p/lib/libcoot-ligand.0.dylib 1.0.0 %n (>= 0.5.2-1)
- %p/lib/libcoot-map-heavy.0.dylib 1.0.0 %n (>= 0.5.2-1)
- %p/lib/libcoot-map-utils.0.dylib 1.0.0 %n (>= 0.5.2-1)
- %p/lib/libcoot-mini-mol.0.dylib 1.0.0 %n (>= 0.5.2-1)
- %p/lib/libcoot-sequence-view.0.dylib 1.0.0 %n (>= 0.5.2-1)
- %p/lib/libcoot-shelx.0.dylib 1.0.0 %n (>= 0.5.2-1)
- %p/lib/libcoot-skeleton.0.dylib 1.0.0 %n (>= 0.5.2-1)
- %p/lib/libcoot-surface.0.dylib 1.0.0 %n (>= 0.5.2-1)
- %p/lib/libcoot-tw.0.dylib 1.0.0 %n (>= 0.5.2-1)
- %p/lib/libcoot-utils.0.dylib 1.0.0 %n (>= 0.5.2-1)
- %p/lib/libcoot-wrap-guile.0.dylib 1.0.0 %n (>= 0.5.2-1)
- %p/lib/libcoot-wrap-python.0.dylib 1.0.0 %n (>= 0.5.2-1)
- %p/lib/libcootaneer.0.dylib 1.0.0 %n (>= 0.5.2-1)
+ %p/lib/libccp4mg-surface.0.dylib 1.0.0 %n (>= 0.6-1)
+ %p/lib/libccp4mg-utils.0.dylib 1.0.0 %n (>= 0.6-1)
+ %p/lib/libcoot-analysis.0.dylib 1.0.0 %n (>= 0.6-1)
+ %p/lib/libcoot-AngleInfo.0.dylib 1.0.0 %n (>= 0.6-1)
+ %p/lib/libcoot-atomutils.0.dylib 1.0.0 %n (>= 0.6-1)
+ %p/lib/libcoot-cabuild.0.dylib 1.0.0 %n (>= 0.6-1)
+ %p/lib/libcoot-compat.0.dylib 1.0.0 %n (>= 0.6-1)
+ %p/lib/libcoot-coord-extras.0.dylib 1.0.0 %n (>= 0.6-1)
+ %p/lib/libcoot-coord-utils.0.dylib 1.0.0 %n (>= 0.6-1)
+ %p/lib/libcoot-coords.0.dylib 1.0.0 %n (>= 0.6-1)
+ %p/lib/libcoot-db-main.0.dylib 1.0.0 %n (>= 0.6-1)
+ %p/lib/libcoot-geometry.0.dylib 1.0.0 %n (>= 0.6-1)
+ %p/lib/libcoot-high-res.0.dylib 1.0.0 %n (>= 0.6-1)
+ %p/lib/libcoot-ideal.0.dylib 1.0.0 %n (>= 0.6-1)
+ %p/lib/libcoot-isosurface.0.dylib 1.0.0 %n (>= 0.6-1)
+ %p/lib/libcoot-ligand.0.dylib 1.0.0 %n (>= 0.6-1)
+ %p/lib/libcoot-map-heavy.0.dylib 1.0.0 %n (>= 0.6-1)
+ %p/lib/libcoot-map-utils.0.dylib 1.0.0 %n (>= 0.6-1)
+ %p/lib/libcoot-mini-mol.0.dylib 1.0.0 %n (>= 0.6-1)
+ %p/lib/libcoot-sequence-view.0.dylib 1.0.0 %n (>= 0.6-1)
+ %p/lib/libcoot-shelx.0.dylib 1.0.0 %n (>= 0.6-1)
+ %p/lib/libcoot-skeleton.0.dylib 1.0.0 %n (>= 0.6-1)
+ %p/lib/libcoot-surface.0.dylib 1.0.0 %n (>= 0.6-1)
+ %p/lib/libcoot-tw.0.dylib 1.0.0 %n (>= 0.6-1)
+ %p/lib/libcoot-utils.0.dylib 1.0.0 %n (>= 0.6-1)
+ %p/lib/libcoot-wrap-guile.0.dylib 1.0.0 %n (>= 0.6-1)
+ %p/lib/libcoot-wrap-python.0.dylib 1.0.0 %n (>= 0.6-1)
+ %p/lib/libcootaneer.0.dylib 1.0.0 %n (>= 0.6-1)
<<
DocFiles: README AUTHORS NEWS COPYING ABOUT-NLS BUGS TODO
<<
Index: ssm.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci/ssm.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- ssm.info 16 Sep 2008 16:28:00 -0000 1.1
+++ ssm.info 21 Sep 2009 07:18:04 -0000 1.2
@@ -1,6 +1,6 @@
Package: ssm
Version: 0.1
-Revision: 5
+Revision: 12
Maintainer: W. G. Scott <wgsc...@users.sourceforge.net>
DescPackaging: <<
Based on package created by Morten Kjeldgaard <m...@bioxray.dk> with minor
@@ -14,8 +14,8 @@
Source: ftp://ftp.bioxray.au.dk/pub/mok/src/%N-%v.tar.gz
Source-MD5: 317d9cc78a88fa5652a4a4b06f329823
NoSourceDirectory: false
-Depends: %n-shlibs (= %v-%r)
-BuildDepends: mmdb-dev (>= 1.0.10-5)
+Depends: %n-shlibs (= %v-%r), gcc44-shlibs (>= 4.4.1-1000)
+BuildDepends: mmdb-dev (>= 1.19-12), gcc44 (>= 4.4.1-1000)
BuildDependsOnly: true
DocFiles: README AUTHORS NEWS COPYING
DescDetail: <<
@@ -42,6 +42,9 @@
#
<<
CompileScript: <<
+LDFLAGS="-L%p/lib/gcc4.4/lib -L%p/lib -L/usr/lib" \
+CXX="%p/lib/gcc4.4/bin/g++" \
+CC="%p/lib/gcc4.4/bin/gcc" \
./configure --prefix=%p
make
<<
------------------------------------------------------------------------------
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