Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci
In directory sc8-pr-cvs17:/tmp/cvs-serv17765
Modified Files:
coot.info
Log Message:
updated version of coot
Index: coot.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci/coot.info,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -d -r1.4 -r1.5
--- coot.info 28 Dec 2006 09:06:23 -0000 1.4
+++ coot.info 9 Jun 2007 04:07:46 -0000 1.5
@@ -1,18 +1,65 @@
Package:coot
-Version: 0.1.2
-Revision: 1007
+Version: 0.3.1
+Revision: 2
GCC: 4.0
Source: http://www.ysbl.york.ac.uk/~emsley/software/%n-%v.tar.gz
-Source-MD5: 10289f909d6824ef4923a97cfb0e63a4
+#Source: http://www.ysbl.york.ac.uk/~emsley/software/pre-release/%n-%v.tar.gz
+Source-MD5: 574d14666659ab9f7be3e2d92585444a
SourceDirectory: %n-%v
Source2:
http://www.ysbl.york.ac.uk/~emsley/software/extras/refmac-lib-data-monomers.tar.gz
Source2-MD5: 88cdbabf47914740f2d13e6960eea3c6
Source3:
http://www.ysbl.york.ac.uk/~emsley/software/extras/reference-structures.tar.gz
Source3-MD5: c09bb6b5524901cb0fde14589546224e
###############################################################################
-BuildDepends: ccp4-onlylibs-dev (>= 6.0-1011), glib, gtk+2, freeglut,
gtkglarea, guile16, guile16-dev, gsl, libglade2, gtk-canvas-dev, libart2 (>=
2.3.16-2), libart2-shlibs (>= 2.3.16-2), guile16-net-http, gtk+2-dev,
libgettext3-dev, imlib, libjpeg, giflib, libpng3, gnome-libs-dev, libiconv-dev
+BuildDepends: <<
+ ccp4-onlylibs-dev (>= 6.0.2-1) ,
+ glib ,
+ gtk+ ,
+ freeglut ,
+ gtkglarea ,
+ guile16 ,
+ guile16-dev ,
+ guile16-gtk-dev ,
+ gsl ,
+ libglade2 ,
+ gtk-canvas-dev ,
+ libart2 (>= 2.3.16-2) ,
+ guile16-net-http ,
+ libgettext3-dev ,
+ imlib ,
+ libjpeg ,
+ giflib ,
+ libpng3 ,
+ gnome-libs-dev ,
+ libiconv-dev ,
+ gtkglext1-shlibs ,
+<<
#
-Depends: guile16-shlibs, gsl-shlibs, libglade2-shlibs, guile16-gtk,
guile16-www, guile16-gui, guile16-goosh (>= 1.3-2), guile16, guile16-net-http,
freeglut-shlibs, libart2-shlibs (>= 2.3.16-2), coot-shlibs (= %v-%r),
imlib-shlibs, libjpeg-shlibs, giflib-shlibs, libpng3-shlibs, glib-shlibs,
gtk+2-shlibs, gnome-libs-shlibs
+Depends: <<
+ coot-shlibs (= %v-%r) ,
+ freeglut-shlibs ,
+ giflib-shlibs ,
+ glib-shlibs ,
+ gnome-libs-shlibs ,
+ gsl-shlibs ,
+ gtk+-shlibs ,
+ guile16-gtk-shlibs ,
+ guile16-shlibs ,
+ imlib-shlibs ,
+ libgettext3-shlibs ,
+ libiconv ,
+ libjpeg-shlibs ,
+ libpng3-shlibs ,
+ libtiff-shlibs ,
+ guile16-gtk ,
+ guile16-www ,
+ guile16-gui ,
+ guile16-goosh (>= 1.3-2) ,
+ guile16 ,
+ guile16-net-http ,
+ gtkglext1
+<<
+# gtkglext1 required at runtime for stereo functionality
#
BuildDependsOnly: false
NoSetLDFLAGS: true
@@ -28,20 +75,34 @@
available from the coot Web site (see below) and is updated regularly.
<<
###############################################################################
+# Patch: %n.patch
PatchScript: <<
-#!/bin/zsh -efv
+#!/bin/zsh -exf
perl -pi.bak -e 's|use-modules \(goosh\)|use-modules \(goosh goosh\)|g'
scheme/coot-utils.scm
-perl -pi.bak -e 's/include <malloc.h>//g' **/*.c
-#perl -pi -e 's|no_tips = _coot.no_tips|#no_tips = _coot.no_tips|g' src/coot.py
-#perl -pi -e 's|_coot.set_ncs_homology_leve|_coot.set_ncs_homology_level|g'
src/coot.py
+#perl -pi.bak -e 's/include <malloc.h>//g' **/*.c
+# Use the correct povray directory
+perl -pi.bak -e 's|povray-3.5|povray-3.6|g' scheme/povray.scm
+# Use "open" to display the png snapshot in Preview.app (or the user's default
application)
+perl -pi.bak -e 's|coot-png-display-program
\"display\"|coot-png-display-program \"open\"|g' scheme/raster3d.scm
+# This is required to get the map displayed on both sides of side-by-side
stereo
+echo "(set-display-lists-for-maps 0)" >>| scheme/group-settings.scm
+# Temp fix for an error (fixed in 0.3.1):
+# perl -pi.bak -e 's|1 0.1\)\)\)\)\)\)\)\)|1 0.1)))))))|g' scheme/fitting.scm
<<
###############################################################################
-ConfigureParams: --with-mmdb-prefix=$CCP4 --with-clipper-prefix=$CCP4
--with-fftw=$CCP4 --with-glut-prefix=%p --with-gl-prefix=/usr/X11R6
--with-gtkcanvas-prefix=%p --with-ssmlib-prefix=$CCP4 --with-imlib-prefix=%p
--with-gtkgl-prefix=%p --with-glib-prefix=%p --with-gsl-prefix=%p --with-guile
--with-python
+ConfigureParams: <<
+--with-mmdb-prefix=$CCP4 --with-clipper-prefix=$CCP4 --with-fftw=$CCP4 \
+--with-glut-prefix=%p --with-gl-prefix=/usr/X11R6 \
+--with-gtkcanvas-prefix=%p --with-ssmlib-prefix=$CCP4 \
+--with-imlib-prefix=%p --with-gtkgl-prefix=%p --with-glib-prefix=%p \
+--with-guile-gtk --with-guile-gtk-prefix=%p \
+--with-gsl-prefix=%p --with-guile --with-python
+<<
###############################################################################
CompileScript: <<
#!/bin/zsh -efv
alias
python="/System/Library/Frameworks/Python.framework/Versions/Current/lib/python2.3"
-source %p/share/xtal/ccp4-onlylibs-dev-6.0/include/ccp4.setup-zsh
+source %p/share/xtal/ccp4-onlylibs-dev-6.0.2/include/ccp4.setup-zsh
export
PATH=/System/Library/Frameworks/Python.framework/Versions/Current/bin:%p/bin:%p/share/guile/1.6/scripts/binoverride:$PATH
export SED=/usr/bin/sed
export
PYTHONPATH="/System/Library/Frameworks/Python.framework/Versions/Current/lib/python2.3"
@@ -58,8 +119,8 @@
<<
###############################################################################
InstallScript: <<
-#!/bin/zsh -efv
-source %p/share/xtal/ccp4-onlylibs-dev-6.0/include/ccp4.setup-zsh
+#!/bin/zsh -exf
+source %p/share/xtal/ccp4-onlylibs-dev-6.0.2/include/ccp4.setup-zsh
export PATH=%p/bin:%p/share/guile/1.6/scripts/binoverride:$PATH
export PYTHONPATH=""
export SED=/usr/bin/sed
@@ -87,15 +148,15 @@
# Reference structures should be in %i/share/coot/reference-structures
cp -R ../reference-structures %i/share/coot/.
cp -R * %i/share/coot/etc/.
-# 0.1.0 %n (>= 0.1.0-pre-1-1) 0.1.0 %n (>= 0.1.0-pre-1-1)
# Get rid of spurious, wrongly placed directory
rm -rf %i/setup
# The new wrapper creates problems. Get rid of it.
+# Clean up the rest of the mess.
/bin/rm -f %i/bin/coot
cp %i/bin/coot-real %i/bin/coot
/bin/rm -f %i/bin/coot-real
-# Get rid of the header files
/bin/rm -rf %i/include
+/bin/rm -rf %i/**/.libs
<<
###############################################################################
DocFiles: README AUTHORS NEWS COPYING ABOUT-NLS BUGS TODO
@@ -110,36 +171,36 @@
lib/libccp4mg-*.dylib
lib/libcoot-*.dylib
<<
-Shlibs: <<
-%p/lib/libccp4mg-surface.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
-%p/lib/libccp4mg-utils.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
-%p/lib/libcoot-analysis.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
-%p/lib/libcoot-AngleInfo.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
-%p/lib/libcoot-atomutils.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
-%p/lib/libcoot-cabuild.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
-%p/lib/libcoot-compat.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
-%p/lib/libcoot-coord-extras.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
-%p/lib/libcoot-coord-utils.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
-%p/lib/libcoot-coords.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
-%p/lib/libcoot-db-main.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
-%p/lib/libcoot-geometry.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
-%p/lib/libcoot-high-res.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
-%p/lib/libcoot-ideal.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
-%p/lib/libcoot-isosurface.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
-%p/lib/libcoot-ligand.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
-%p/lib/libcoot-map-heavy.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
-%p/lib/libcoot-map-utils.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
-%p/lib/libcoot-mini-mol.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
-%p/lib/libcoot-mmtz-extras.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
-%p/lib/libcoot-sequence-view.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
-%p/lib/libcoot-shelx.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
-%p/lib/libcoot-skeleton.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
-%p/lib/libcoot-surface.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
-%p/lib/libcoot-tw.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
-%p/lib/libcoot-utils.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
-%p/lib/libcoot-wrap-guile.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
-%p/lib/libcoot-wrap-python.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
-<<
+ Shlibs: <<
+ %p/lib/libccp4mg-surface.0.0.0.dylib 1.0.0
%n (>= 0.3-1)
+ %p/lib/libccp4mg-utils.0.0.0.dylib
1.0.0 %n (>= 0.3-1)
+ %p/lib/libcoot-analysis.0.0.0.dylib 1.0.0
%n (>= 0.3-1)
+ %p/lib/libcoot-AngleInfo.0.0.0.dylib 1.0.0
%n (>= 0.3-1)
+ %p/lib/libcoot-atomutils.0.0.0.dylib 1.0.0
%n (>= 0.3-1)
+ %p/lib/libcoot-cabuild.0.0.0.dylib
1.0.0 %n (>= 0.3-1)
+ %p/lib/libcoot-compat.0.0.0.dylib
1.0.0 %n (>= 0.3-1)
+ %p/lib/libcoot-coord-extras.0.0.0.dylib 1.0.0
%n (>= 0.3-1)
+ %p/lib/libcoot-coord-utils.0.0.0.dylib 1.0.0
%n (>= 0.3-1)
+ %p/lib/libcoot-coords.0.0.0.dylib
1.0.0 %n (>= 0.3-1)
+ %p/lib/libcoot-db-main.0.0.0.dylib
1.0.0 %n (>= 0.3-1)
+ %p/lib/libcoot-geometry.0.0.0.dylib 1.0.0
%n (>= 0.3-1)
+ %p/lib/libcoot-high-res.0.0.0.dylib 1.0.0
%n (>= 0.3-1)
+ %p/lib/libcoot-ideal.0.0.0.dylib
1.0.0 %n (>= 0.3-1)
+ %p/lib/libcoot-isosurface.0.0.0.dylib 1.0.0
%n (>= 0.3-1)
+ %p/lib/libcoot-ligand.0.0.0.dylib
1.0.0 %n (>= 0.3-1)
+ %p/lib/libcoot-map-heavy.0.0.0.dylib 1.0.0
%n (>= 0.3-1)
+ %p/lib/libcoot-map-utils.0.0.0.dylib 1.0.0
%n (>= 0.3-1)
+ %p/lib/libcoot-mini-mol.0.0.0.dylib 1.0.0
%n (>= 0.3-1)
+ %p/lib/libcoot-mmtz-extras.0.0.0.dylib 1.0.0
%n (>= 0.3-1)
+ %p/lib/libcoot-sequence-view.0.0.0.dylib 1.0.0
%n (>= 0.3-1)
+ %p/lib/libcoot-shelx.0.0.0.dylib
1.0.0 %n (>= 0.3-1)
+ %p/lib/libcoot-skeleton.0.0.0.dylib 1.0.0
%n (>= 0.3-1)
+ %p/lib/libcoot-surface.0.0.0.dylib
1.0.0 %n (>= 0.3-1)
+ %p/lib/libcoot-tw.0.0.0.dylib
1.0.0 %n (>= 0.3-1)
+ %p/lib/libcoot-utils.0.0.0.dylib
1.0.0 %n (>= 0.3-1)
+ %p/lib/libcoot-wrap-guile.0.0.0.dylib 1.0.0
%n (>= 0.3-1)
+ %p/lib/libcoot-wrap-python.0.0.0.dylib 1.0.0
%n (>= 0.3-1)
+ <<
<<
#
###############################################################################
-------------------------------------------------------------------------
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