Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv4948
Modified Files:
wise2.info
Log Message:
wise2 2.4.1
Index: wise2.info
===================================================================
RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci/wise2.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- wise2.info 9 Apr 2012 21:46:46 -0000 1.1
+++ wise2.info 26 Feb 2013 17:43:31 -0000 1.2
@@ -1,18 +1,29 @@
Package: wise2
-Version: 2.2.0
-Revision: 4
-Source: ftp://ftp.ebi.ac.uk/pub/software/unix/wise2/wise%v.tar.gz
-Source-MD5: 0584240f77885e37528e99e64535ab60
+Version: 2.4.1
+Revision: 1
+#Source: ftp://ftp.ebi.ac.uk/pub/software/unix/wise2/wise%v.tar.gz
+Source: http://www.ebi.ac.uk/~birney/wise2/wise%v.tar.gz
+Source-MD5: d70c404c1dc40ceef7718757b11bdaa0
+BuildDepends: <<
+ glib2-dev,
+ pkgconfig
+<<
+Depends: <<
+ glib2-shlibs
+<<
PatchScript: <<
## 10.7 has a getline function, but it doesn't function identically to
the included
## getline, so instead of patching to use system-getline, rename the
included
## function to eliminate conflicting declarations
perl -pi -e 's|getline|wise2_getline|g' src/HMMer2/sqio.c
+ ### uses dead glib-config to get glib cflags and libs, so patch to use
pkg-config
+ perl -pi -e 's|glib-config --cflags|pkg-config --cflags glib-2.0|g;
s|glib-config --libs|pkg-config --libs glib-2.0|g' `grep -lr glib-config *`
<<
CompileScript: <<
#!/bin/sh -ex
cd src
+ export PKG_CONFIG_PATH=%p/lib/glib-2.0/pkgconfig-strict:$PKG_CONFIG_PATH
make all
export WISECONFIGDIR=%b/wisecfg/
make test
@@ -26,10 +37,13 @@
mv wisecfg test_data %i/share/wise2/
mkdir -p %i/lib
- mv src/base/libwisebase.a %i/lib
- mv src/dynlibsrc/libdyna.a %i/lib
- mv src/models/libmodel.a %i/lib
- mv src/HMMer2/libhmmer.a %i/lib
+ cp src/base/libwisebase.a %i/lib
+ cp src/dynlibsrc/libdyna.a %i/lib
+ cp src/dynlibsrc/libdyna_glib.a %i/lib
+ cp src/external/mott/libmott.a %i/lib
+ cp src/models/libmodel.a %i/lib
+ cp src/socket/libwisesocket.a %i/lib
+ cp src/HMMer2/libhmmer.a %i/lib
mkdir -p %i/include
mv src/api/include/*.h %i/include
@@ -59,6 +73,7 @@
<<
DescPort: <<
o rename getline() to wise2_getline() to avoid conflicting declarations with
10.7 getline()
+o Change from obsolete glib-config to pkg-config
<<
Description: Intelligent algorithms for DNA searches
DescDetail: <<
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