[cvs] dists/10.4/stable/main/finkinfo/utils unrar.info,1.11,1.12

2013-08-08 Thread K.-M. Schindler
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/utils
In directory 
sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv15256/10.4/stable/main/finkinfo/utils

Modified Files:
unrar.info 
Log Message:
unrar: update to new upstream version (5.0.10).

Index: unrar.info
===
RCS file: /cvsroot/fink/dists/10.4/stable/main/finkinfo/utils/unrar.info,v
retrieving revision 1.11
retrieving revision 1.12
diff -u -d -r1.11 -r1.12
--- unrar.info  19 Jun 2013 20:47:03 -  1.11
+++ unrar.info  8 Aug 2013 08:44:24 -   1.12
@@ -1,11 +1,11 @@
 Package: unrar 
-Version: 5.0.7
+Version: 5.0.10
 Revision: 1
 Description: RAR archive decoder
 License: Restrictive/Distributable
 
 Source: http://www.rarlab.com/rar/%nsrc-%v.tar.gz
-Source-MD5: bc46989f39d3250215f778928c73e756
+Source-MD5: 9bec605946c0d7e8b0534a77577fa2fb
 SourceDirectory: unrar
 
 GCC: 4.0


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[cvs] dists/10.7/stable/main/finkinfo/utils unrar.info,1.11,1.12

2013-08-08 Thread K.-M. Schindler
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/utils
In directory 
sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv15256/10.7/stable/main/finkinfo/utils

Modified Files:
unrar.info 
Log Message:
unrar: update to new upstream version (5.0.10).

Index: unrar.info
===
RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/utils/unrar.info,v
retrieving revision 1.11
retrieving revision 1.12
diff -u -d -r1.11 -r1.12
--- unrar.info  19 Jun 2013 20:47:03 -  1.11
+++ unrar.info  8 Aug 2013 08:44:24 -   1.12
@@ -1,11 +1,11 @@
 Package: unrar 
-Version: 5.0.7
+Version: 5.0.10
 Revision: 1
 Description: RAR archive decoder
 License: Restrictive/Distributable
 
 Source: http://www.rarlab.com/rar/%nsrc-%v.tar.gz
-Source-MD5: bc46989f39d3250215f778928c73e756
+Source-MD5: 9bec605946c0d7e8b0534a77577fa2fb
 SourceDirectory: unrar
 
 GCC: 4.0


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[cvs] dists/10.4/stable/main/finkinfo/10.5-EOL/utils unrar.info, 1.1, 1.2

2013-08-08 Thread K.-M. Schindler
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/10.5-EOL/utils
In directory 
sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv15256/10.4/stable/main/finkinfo/10.5-EOL/utils

Modified Files:
unrar.info 
Log Message:
unrar: update to new upstream version (5.0.10).

Index: unrar.info
===
RCS file: 
/cvsroot/fink/dists/10.4/stable/main/finkinfo/10.5-EOL/utils/unrar.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- unrar.info  7 Jul 2013 23:07:38 -   1.1
+++ unrar.info  8 Aug 2013 08:44:24 -   1.2
@@ -1,11 +1,11 @@
 Package: unrar 
-Version: 5.0.7
+Version: 5.0.10
 Revision: 1
 Description: RAR archive decoder
 License: Restrictive/Distributable
 
 Source: http://www.rarlab.com/rar/%nsrc-%v.tar.gz
-Source-MD5: bc46989f39d3250215f778928c73e756
+Source-MD5: 9bec605946c0d7e8b0534a77577fa2fb
 SourceDirectory: unrar
 
 GCC: 4.0


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[cvs] dists/10.4/stable/main/finkinfo/10.4-EOL/utils unrar.info, 1.11, 1.12

2013-08-08 Thread K.-M. Schindler
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/10.4-EOL/utils
In directory 
sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv15256/10.4/stable/main/finkinfo/10.4-EOL/utils

Modified Files:
unrar.info 
Log Message:
unrar: update to new upstream version (5.0.10).

Index: unrar.info
===
RCS file: 
/cvsroot/fink/dists/10.4/stable/main/finkinfo/10.4-EOL/utils/unrar.info,v
retrieving revision 1.11
retrieving revision 1.12
diff -u -d -r1.11 -r1.12
--- unrar.info  19 Jun 2013 20:47:03 -  1.11
+++ unrar.info  8 Aug 2013 08:44:24 -   1.12
@@ -1,11 +1,11 @@
 Package: unrar 
-Version: 5.0.7
+Version: 5.0.10
 Revision: 1
 Description: RAR archive decoder
 License: Restrictive/Distributable
 
 Source: http://www.rarlab.com/rar/%nsrc-%v.tar.gz
-Source-MD5: bc46989f39d3250215f778928c73e756
+Source-MD5: 9bec605946c0d7e8b0534a77577fa2fb
 SourceDirectory: unrar
 
 GCC: 4.0


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[cvs] dists/10.7/stable/main/finkinfo/languages erlang-otp.info, 1.3, 1.4

2013-08-08 Thread Max Horn
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/languages
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv19351

Modified Files:
erlang-otp.info 
Log Message:
New upstream version

Index: erlang-otp.info
===
RCS file: 
/cvsroot/fink/dists/10.7/stable/main/finkinfo/languages/erlang-otp.info,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- erlang-otp.info 11 Jul 2013 18:10:19 -  1.3
+++ erlang-otp.info 8 Aug 2013 10:31:04 -   1.4
@@ -1,8 +1,8 @@
 Info2: 
 Package: erlang-otp
 
-Version: r15b01
-Type: v (R15B01)
+Version: r16b01
+Type: v (R16B01)
 License: OSI-Approved
 Revision: 2
 Description: General-purpose programming language
@@ -15,12 +15,12 @@
 libncurses5, gd2, unixodbc2 | unixodbc2-nox, fink (= 0.24.12-1)
 
 Source: http://www.erlang.org/download/otp_src_%type_raw[v].tar.gz
-Source-MD5: f12d00f6e62b36ad027d6c0c08905fad
+Source-MD5: 266b95db35560e505c9f69cc3e539e41
 Source2: http://www.erlang.org/download/otp_doc_man_%type_raw[v].tar.gz
-Source2-MD5: d87412c2a1e6005bbe29dfe642a9ca20
+Source2-MD5: 951be958bc9af55df6062165cf21fe1f
 Source2ExtractDir: docs-man
 Source3: http://www.erlang.org/download/otp_doc_html_%type_raw[v].tar.gz
-Source3-MD5: 7569cae680eecd64e7e5d952be788ee5
+Source3-MD5: 288fd4066ae07fa3ca23043a31826d46
 Source3ExtractDir: docs-html
 
 # PatchFile: %n.patch


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[cvs] dists/10.7/stable/main/finkinfo/web javascript-common.info, 1.1, 1.2

2013-08-08 Thread Justin F. Hallett
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/web
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv31476

Modified Files:
javascript-common.info 
Log Message:
Update for upcoming apache 2.4

Index: javascript-common.info
===
RCS file: 
/cvsroot/fink/dists/10.7/stable/main/finkinfo/web/javascript-common.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- javascript-common.info  4 Jul 2012 20:56:48 -   1.1
+++ javascript-common.info  8 Aug 2013 15:07:43 -   1.2
@@ -1,6 +1,6 @@
 Package: javascript-common
 Version: 7
-Revision: 1
+Revision: 2
 ###
 Suggests: apache2
 ###
@@ -28,6 +28,7 @@
 
 case ${1} in
configure)
+   ### Apache 2.2
mkdir -p %p/etc/apache2/conf.d
 
if [ ! -e %p/etc/apache2/conf.d/javascript-common.conf ]
@@ -35,6 +36,18 @@
ln -s %p/etc/javascript-common/javascript-common.conf 
%p/etc/apache2/conf.d/javascript-common.conf
fi
 
+   ### Apache 2.4
+   mkdir -p %p/etc/apache2/conf-available
+
+   if [ ! -e %p/etc/apache2/conf-available/javascript-common.conf ]
+   then
+   ln -s %p/etc/javascript-common/javascript-common.conf 
%p/etc/apache2/conf-available/javascript-common.conf
+   if which a2enconf /dev/null 21
+   then
+   a2enconf javascript-common
+   fi
+   fi
+
if which apache2ctl /dev/null 21
then
apache2ctl restart
@@ -57,11 +70,22 @@
 PostRmScript: 
 set -e
 
+### Apache 2.2
 if [ -L %p/etc/apache2/conf.d/javascript-common.conf ]
 then
rm -f %p/etc/apache2/conf.d/javascript-common.conf
 fi
 
+### Apache 2.4
+if [ -L %p/etc/apache2/conf-available/javascript-common.conf ]
+then
+   if which a2disconf /dev/null 21
+   then
+   a2disconf javascript-common
+   fi
+   rm -f %p/etc/apache2/conf-available/javascript-common.conf
+fi
+
 if which apache2ctl /dev/null 21
 then
apache2ctl restart


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[cvs] experimental/thesin/finkinfo php5.info,1.14,1.15

2013-08-08 Thread Justin F. Hallett
Update of /cvsroot/fink/experimental/thesin/finkinfo
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv31800

Modified Files:
php5.info 
Log Message:
Update php5 again in hopes it'll work better with apache2.4, it MUST be 
recompiled against 2.4 so I'm not sure this will help at all sadly

Index: php5.info
===
RCS file: /cvsroot/fink/experimental/thesin/finkinfo/php5.info,v
retrieving revision 1.14
retrieving revision 1.15
diff -u -d -r1.14 -r1.15
--- php5.info   7 Aug 2013 23:21:32 -   1.14
+++ php5.info   8 Aug 2013 15:09:18 -   1.15
@@ -4,7 +4,7 @@
 Revision: 15.2
 Type: sapiver (20100525)
 ###
-BuildDepends: fink (= 0.34.99.git), automake1.11, apache2-prefork-dev | 
apache2-dev, aspell-dev, coreutils, cyrus-sasl2-dev, db53-aes, enchant1-dev, 
expat1, file-dev, freetds (= 1:0.91-1), freetds-dev, freetype219, gd2, 
glib2-dev, gmp5, libapr.0-dev, libc-client1-dev, libcurl4, libevent2, 
libgcrypt, libicu36-dev, libjpeg9, libmcrypt, libmhash2, libonig2-dev, 
libodbc3-dev, libpcre1, libpng16, libtidy-0.99.0-dev, libtool2, libxml2 ( 
2.9.0), libxslt, mysql-unified-dev | libmysqlclient18-dev, libnetsnmp30-dev, 
netcat, openldap24-dev, openssl100-dev, postgresql91-dev, qdbm14, re2c, 
recode-dev, sed, sqlite3-dev, wrap
+BuildDepends: fink (= 0.34.99.git), automake1.11, apache2-prefork-dev | 
apache2-dev (= 2.4.6), aspell-dev, coreutils, cyrus-sasl2-dev, db53-aes, 
enchant1-dev, expat1, file-dev, freetds (= 1:0.91-1), freetds-dev, 
freetype219, gd2, glib2-dev, gmp5, libapr.0-dev, libc-client1-dev, libcurl4, 
libevent2, libgcrypt, libicu36-dev, libjpeg9, libmcrypt, libmhash2, 
libonig2-dev, libodbc3-dev, libpcre1, libpng16, libtidy-0.99.0-dev, libtool2, 
libxml2 ( 2.9.0), libxslt, mysql-unified-dev | libmysqlclient18-dev, 
libnetsnmp30-dev, netcat, openldap24-dev, openssl100-dev, postgresql91-dev, 
qdbm14, re2c, recode-dev, sed, sqlite3-dev, wrap
 Depends: libapache2-mod-php5 (= %v-%r) | libapache2-mod-php5filter (= %v-%r) | 
php5-cgi (= %v-%r) | php5-fpm (= %v-%r), php5-common (= %v-%r)
 ###
 CustomMirror: 
@@ -194,7 +194,7 @@
 CompileScript: 
 #!/bin/sh -ex
 
-apache2_CONFARGS=--prefix=%p --with-apxs2=%p/sbin/apxs2 \
+apache2_CONFARGS=--prefix=%p --with-apxs2=%p/bin/apxs2 \
--with-config-file-path=%p/etc/php5/apache2 \
--with-config-file-scan-dir=%p/etc/php5/apache2/conf.d \
%c \
@@ -235,7 +235,7 @@
--with-pdo-sqlite=shared,%p \
--with-pdo-dblib=shared,%p;
 
-apache2filter_CONFARGS=--prefix=%p --with-apxs2filter=%p/sbin/apxs2 \
+apache2filter_CONFARGS=--prefix=%p --with-apxs2filter=%p/bin/apxs2 \
--with-config-file-path=%p/etc/php5/apache2filter \
--with-config-file-scan-dir=%p/etc/php5/apache2filter/conf.d \
%c \
@@ -392,7 +392,7 @@
 #!/bin/sh -ex
 
 # install apache2 DSO module
-APACHE_MOD_DIR=%d`%p/sbin/apxs2 -q LIBEXECDIR`;
+APACHE_MOD_DIR=%d`%p/bin/apxs2 -q LIBEXECDIR`;
 mkdir -p ${APACHE_MOD_DIR};
 cp %b/apache2-build/libs/libphp5.so ${APACHE_MOD_DIR}/libphp5.so;
 mkdir -p %i/etc/apache2/mods-available;


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[cvs] dists/10.7/stable/main/finkinfo/libs qt4-base.patch,1.2,1.3

2013-08-08 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/libs
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv1807

Modified Files:
qt4-base.patch 
Log Message:
add fixes to build on future os

Index: qt4-base.patch
===
RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/libs/qt4-base.patch,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -d -r1.2 -r1.3
--- qt4-base.patch  20 Apr 2012 19:30:36 -  1.2
+++ qt4-base.patch  8 Aug 2013 16:12:39 -   1.3
@@ -153,3 +153,85 @@
  target.path=$$[QT_INSTALL_BINS]
  INSTALLS += target
  
+--- 
qt-kde-qt-mac/src/3rdparty/javascriptcore/JavaScriptCore/wtf/HashTable.h.orig   
   2013-08-07 12:25:07.0 -0400
 qt-kde-qt-mac/src/3rdparty/javascriptcore/JavaScriptCore/wtf/HashTable.h   
2013-08-07 12:22:06.0 -0400
+@@ -257,8 +257,8 @@
+ 
+ using std::swap;
+ 
+-#if !COMPILER(MSVC)
+-// Visual C++ has a swap for pairs defined.
++#if !COMPILER(MSVC)  !OS(QNX)  !defined(_LIBCPP_VERSION)
++// The Dinkumware C++ library (used by MSVC and QNX) and clang's libc++ 
have a swap for pairs defined.
+ 
+ // swap pairs by component, in case of pair members that specialize swap
+ templatetypename T, typename U inline void swap(pairT, U a, pairT, 
U b)
+--- 
qt-kde-qt-mac/src/3rdparty/javascriptcore/JavaScriptCore/runtime/Collector.cpp.orig
2013-08-07 12:22:21.0 -0400
 
qt-kde-qt-mac/src/3rdparty/javascriptcore/JavaScriptCore/runtime/Collector.cpp  
   2013-08-07 12:23:43.0 -0400
+@@ -52,6 +52,8 @@
+ #include mach/task.h
+ #include mach/thread_act.h
+ #include mach/vm_map.h
++// clang's libc++ headers does not pull in pthread.h (but libstdc++ does)
++#include pthread.h
+ 
+ #elif OS(WINDOWS)
+ 
+--- qt-kde-qt-mac/src/declarative/util/qdeclarativefontloader.cpp.orig 
2013-08-07 12:42:40.0 -0400
 qt-kde-qt-mac/src/declarative/util/qdeclarativefontloader.cpp  
2013-08-07 12:43:31.0 -0400
+@@ -64,7 +64,7 @@
+ Q_OBJECT
+ 
+ public:
+-QDeclarativeFontObject(int _id);
++QDeclarativeFontObject(int _id = -1);
+ 
+ void download(const QUrl url, QNetworkAccessManager *manager);
+ 
+@@ -84,7 +84,7 @@
+ Q_DISABLE_COPY(QDeclarativeFontObject)
+ };
+ 
+-QDeclarativeFontObject::QDeclarativeFontObject(int _id = -1)
++QDeclarativeFontObject::QDeclarativeFontObject(int _id)
+ : QObject(0), id(_id), reply(0), redirectCount(0) {}
+ 
+ 
+--- qt-kde-qt-mac/src/corelib/tools/qiterator.h.orig   2013-08-07 
20:08:24.0 -0400
 qt-kde-qt-mac/src/corelib/tools/qiterator.h2013-08-07 
20:08:48.0 -0400
+@@ -42,15 +42,11 @@
+ #ifndef QITERATOR_H
+ #define QITERATOR_H
+ 
++#include iterator
+ #include QtCore/qglobal.h
+ 
+ QT_BEGIN_HEADER
+ 
+-namespace std {
+-struct bidirectional_iterator_tag;
+-struct random_access_iterator_tag;
+-}
+-
+ QT_BEGIN_NAMESPACE
+ 
+ QT_MODULE(Core)
+--- qt-kde-qt-mac/src/3rdparty/clucene/src/CLucene/StdHeader.h.orig
2013-08-07 20:24:16.0 -0400
 qt-kde-qt-mac/src/3rdparty/clucene/src/CLucene/StdHeader.h 2013-08-07 
20:26:02.0 -0400
+@@ -463,8 +463,16 @@
+ 
+ //use std namespace
+ #ifndef LUCENE_NO_STDC_NAMESPACE
++#ifdef _LIBCPP_VERSION
++// clang's libc++ pulls in cwchar, clucene pulls in wchar.h and the entire std
++// namespace which causes ambiguity between ::wcschar() and std::wcschar(), 
but
++// clucene is only using std::min() and std::max()
++using std::min;
++using std::max;
++#else
+ using namespace std;
+ #endif
++#endif
+ 
+ 
+ 


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[cvs] dists/10.7/stable/main/finkinfo/libs qt4-base-mac.info,1.6,1.7

2013-08-08 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/libs
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv1905

Modified Files:
qt4-base-mac.info 
Log Message:
bump graphic libs dependencies and prevent build on future os until fixed

Index: qt4-base-mac.info
===
RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/libs/qt4-base-mac.info,v
retrieving revision 1.6
retrieving revision 1.7
diff -u -d -r1.6 -r1.7
--- qt4-base-mac.info   18 Dec 2012 03:11:11 -  1.6
+++ qt4-base-mac.info   8 Aug 2013 16:14:22 -   1.7
@@ -1,7 +1,7 @@
 Info4: 
 Package: qt4-base-mac
 Version: 4.7.3
-Revision: 35
+Revision: 36
 Description: Cross-Platform framework (%type_pkg[qt])
 Type: qt (mac)
 License: LGPL
@@ -42,10 +42,10 @@
kde4-buildenv (= 4.6.0-1),
libgettext8-dev,
libiconv-dev,
-   libjpeg8,
+   libjpeg9,
libmng2,
-   libpng15 (= 1.5.2-1),
-   libtiff,
+   libpng16,
+   libtiff5,
macosx (= 10.4.3-1),
pkgconfig (= 0.23-1),
sqlite3-dev,
@@ -56,6 +56,7 @@
 BuildDependsOnly: true
 GCC: 4.0
 
+Distribution: 10.4, 10.5, 10.6, 10.7, 10.8
 CustomMirror: 
Primary: http://www.finkproject.org/~ranger/distfiles
eur-NL: http://www.finkproject.org/~ranger/distfiles
@@ -70,7 +71,7 @@
perl -pi -e 's,CFG_MAC_XARCH=auto,CFG_MAC_XARCH=no,g' configure
 
 PatchFile: qt4-base.patch
-PatchFile-MD5: 39c9b9cdb174585d18a28a5f20c455eb
+PatchFile-MD5: 5d55273ff5ba618a663b024e6a1af432 
 
 NoSetLDFLAGS: true
 UseMaxBuildJobs: true
@@ -368,10 +369,10 @@
Description: Qt GUI library (%type_pkg[qt])
Depends: 
%N-qtcore-shlibs (= %v-%r),
-   libjpeg8-shlibs (= 8-1),
+   libjpeg9-shlibs,
libmng2-shlibs (= 1.0-1),
-   libpng15-shlibs (= 1.5.2-1),
-   libtiff-shlibs (= 1.0-1)
+   libpng16-shlibs,
+   libtiff5-shlibs

Replaces: 
qt4-%type_pkg[qt] ( 4.7.3-2),
@@ -840,6 +841,10 @@
 DescPort: 
Fix QProcess timeout (thanks for no monotonic clock, apple!).
See: https://bugreports.qt-project.org/browse/QTBUG-22301
+   Backport commit 48baeef0766ba145d26d374561e152b40245f3b8 for libc++.
+   Backport part of commit 99f138ad08101315cc871489c78cd10755b046b0 for 
clang.
+   Backport commit 19e2b4d6eb733d9fd4eb69c0622b699fd08a3203 for c+11.
+   Backport commit 14641095dbeafe155a1d1000c0f0f6ca77a70b2c for libc++.
 
 
 


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[cvs] dists/10.7/stable/main/finkinfo/libs qt4-base-x11.info,1.6,1.7

2013-08-08 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/libs
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv1848

Modified Files:
qt4-base-x11.info 
Log Message:
bump graphic libs dependencies and fix build on future os

Index: qt4-base-x11.info
===
RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/libs/qt4-base-x11.info,v
retrieving revision 1.6
retrieving revision 1.7
diff -u -d -r1.6 -r1.7
--- qt4-base-x11.info   18 Dec 2012 03:10:14 -  1.6
+++ qt4-base-x11.info   8 Aug 2013 16:13:29 -   1.7
@@ -1,7 +1,7 @@
 Info4: 
 Package: qt4-base-x11
 Version: 4.7.3
-Revision: 36
+Revision: 37
 Description: Cross-Platform framework (%type_pkg[qt])
 Type: qt (x11)
 License: LGPL
@@ -42,10 +42,10 @@
kde4-buildenv (= 4.6.0-1),
libgettext8-dev,
libiconv-dev,
-   libjpeg8,
+   libjpeg9,
libmng2 (= 1.0-1),
-   libpng15 (= 1.5.2-1),
-   libtiff (= 1.0-1),
+   libpng16,
+   libtiff5,
macosx (= 10.4.3-1),
pkgconfig (= 0.23-1),
sqlite3-dev,
@@ -72,7 +72,7 @@
perl -pi -e 's,CFG_MAC_XARCH=auto,CFG_MAC_XARCH=no,g' configure
 
 PatchFile: qt4-base.patch
-PatchFile-MD5: 39c9b9cdb174585d18a28a5f20c455eb
+PatchFile-MD5: 5d55273ff5ba618a663b024e6a1af432  
 
 NoSetLDFLAGS: true
 UseMaxBuildJobs: true
@@ -351,10 +351,10 @@
fontconfig2-shlibs (= 2.8.0-6),
freetype219-shlibs (= 2.4.4-2),
glib2-shlibs (= 2.22.0-1),
-   libjpeg8-shlibs (= 8-1),
+   libjpeg9-shlibs,
libmng2-shlibs (= 1.0-1),
-   libpng15-shlibs (= 1.5.2-1),
-   libtiff-shlibs (= 1.0-1),
+   libpng16-shlibs,
+   libtiff5-shlibs,
x11-shlibs

Replaces: 
@@ -723,6 +723,10 @@
 DescPort: 
Fix QProcess timeout (thanks for no monotonic clock, apple!).
See: https://bugreports.qt-project.org/browse/QTBUG-22301
+   Backport commit 48baeef0766ba145d26d374561e152b40245f3b8 for libc++.
+   Backport part of commit 99f138ad08101315cc871489c78cd10755b046b0 for 
clang.
+   Backport commit 19e2b4d6eb733d9fd4eb69c0622b699fd08a3203 for c+11.
+   Backport commit 14641095dbeafe155a1d1000c0f0f6ca77a70b2c for libc++.
 
 
 


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[cvs] dists/10.4/stable/main/finkinfo/sci spyder-py.info,1.1,1.2

2013-08-08 Thread David Fang
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv7485

Modified Files:
spyder-py.info 
Log Message:
upstream update 2.2.1, use setuptools-tng


Index: spyder-py.info
===
RCS file: /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci/spyder-py.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- spyder-py.info  23 May 2012 14:45:25 -  1.1
+++ spyder-py.info  8 Aug 2013 18:15:59 -   1.2
@@ -1,6 +1,6 @@
 Info2: 
 Package: spyder%type_pkg[qt]-py%type_pkg[python]
-Version: 2.1.9
+Version: 2.2.1
 Revision: 1
 Maintainer: David Fang fang...@users.sourceforge.net
 Homepage: http://packages.python.org/spyder/
@@ -21,7 +21,7 @@
 DescUsage: 
 spyder is installed as %p/bin/spyder%type_pkg[qt]-py%type_pkg[python]
 
-BuildDepends: distribute-py%type_pkg[python]
+BuildDepends: setuptools-tng-py%type_pkg[python]
 Depends: 
numpy-py%type_pkg[python],
scipy-py%type_pkg[python],
@@ -32,7 +32,7 @@
python%type_pkg[python]
 
 Source: http://spyderlib.googlecode.com/files/spyder-%v.zip
-Source-MD5: 051a4540ccca49976beec93c2d1f3d32
+Source-MD5: 98122a267b64396c86bb182217d0e243
 CompileScript: 
#!/bin/sh -ev
export 
PYTHONPATH=%p/lib/qt4%type_pkg[qt]/lib/python%type_raw[python]/site-packages
@@ -50,6 +50,8 @@
echo export 
PYTHONPATH=%p/lib/qt4%type_pkg[qt]/lib/python%type_raw[python]/site-packages ; 
\
echo %p/bin/$exe.py ; }  %i/bin/$exe
chmod +x %i/bin/$exe
+   # something for windows... delete!
+   rm -f %i/bin/spyder_win_post_install.py
 
 DocFiles: 
PKG-INFO


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[cvs] dists/10.7/stable/main/finkinfo/sci spyder-py.info,1.4,1.5

2013-08-08 Thread David Fang
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv8719

Modified Files:
spyder-py.info 
Log Message:
sync. w/ 10.7, upstream update 2.2.1, use setuptools-tng-py


Index: spyder-py.info
===
RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci/spyder-py.info,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -d -r1.4 -r1.5
--- spyder-py.info  31 Jan 2013 01:15:14 -  1.4
+++ spyder-py.info  8 Aug 2013 18:25:58 -   1.5
@@ -1,6 +1,6 @@
 Info2: 
 Package: spyder%type_pkg[qt]-py%type_pkg[python]
-Version: 2.1.13
+Version: 2.2.1
 Revision: 1
 Maintainer: David Fang fang...@users.sourceforge.net
 Homepage: http://packages.python.org/spyder/
@@ -20,7 +20,7 @@
 DescUsage: 
 spyder is installed as %p/bin/spyder%type_pkg[qt]-py%type_pkg[python]
 
-BuildDepends: distribute-py%type_pkg[python]
+BuildDepends: setuptools-tng-py%type_pkg[python]
 Depends: 
numpy-py%type_pkg[python],
scipy-py%type_pkg[python],
@@ -31,7 +31,7 @@
python%type_pkg[python]
 
 Source: http://spyderlib.googlecode.com/files/spyder-%v.zip
-Source-MD5: d3d129876bc980287e1ae4f5ff147ffb
+Source-MD5: 98122a267b64396c86bb182217d0e243
 CompileScript: 
#!/bin/sh -ev
export 
PYTHONPATH=%p/lib/qt4%type_pkg[qt]/lib/python%type_raw[python]/site-packages
@@ -49,6 +49,7 @@
echo export 
PYTHONPATH=%p/lib/qt4%type_pkg[qt]/lib/python%type_raw[python]/site-packages ; 
\
echo %p/bin/$exe.py ; }  %i/bin/$exe
chmod +x %i/bin/$exe
+   # something for windows... delete!
rm -f %i/bin/spyder_win_post_install.py
 
 DocFiles: 


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[cvs] dists/10.7/stable/main/finkinfo/sci freehelix.info,1.2,1.3

2013-08-08 Thread K.-M. Schindler
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci
In directory 
sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv20032/10.7/stable/main/finkinfo/sci

Modified Files:
freehelix.info 
Log Message:
freehelix: update the source URLS

Index: freehelix.info
===
RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci/freehelix.info,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -d -r1.2 -r1.3
--- freehelix.info  14 Jun 2013 23:12:29 -  1.2
+++ freehelix.info  8 Aug 2013 20:59:57 -   1.3
@@ -6,12 +6,12 @@
 Depends:  gcc48-shlibs
 License:  Restrictive
 
-Source: ftp://ndbserver.rutgers.edu/NDB/programs/%n%v/freehel%v.for
-Source2: ftp://ndbserver.rutgers.edu/NDB/programs/%n%v/sel%v.for
-Source3: ftp://ndbserver.rutgers.edu/NDB/programs/%n%v/freehel.tex
-Source4: ftp://ndbserver.rutgers.edu/NDB/programs/%n%v/test.com
-Source5: ftp://ndbserver.rutgers.edu/NDB/programs/%n%v/test.inp
-Source6: ftp://ndbserver.rutgers.edu/NDB/programs/%n%v/README
+Source:  http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/freehel%v.for
+Source2: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/sel%v.for
+Source3: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/freehel.tex
+Source4: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/test.com
+Source5: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/test.inp
+Source6: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/README
 Source-MD5: 6bd8ecb84a087dfad0d3464e204e1a3f
 Source2-MD5: 559cc8a1804a7f583766749bd92bb6f5
 Source3-MD5: 2e79bba04111965eb6bf5f0917a6736d


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[cvs] dists/10.4/stable/main/finkinfo/10.5-EOL/sci freehelix.info, 1.1, 1.2

2013-08-08 Thread K.-M. Schindler
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/10.5-EOL/sci
In directory 
sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv20032/10.4/stable/main/finkinfo/10.5-EOL/sci

Modified Files:
freehelix.info 
Log Message:
freehelix: update the source URLS

Index: freehelix.info
===
RCS file: 
/cvsroot/fink/dists/10.4/stable/main/finkinfo/10.5-EOL/sci/freehelix.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- freehelix.info  7 Jul 2013 23:07:24 -   1.1
+++ freehelix.info  8 Aug 2013 20:59:57 -   1.2
@@ -6,12 +6,12 @@
 Depends:  gcc48-shlibs
 License:  Restrictive
 
-Source: ftp://ndbserver.rutgers.edu/NDB/programs/%n%v/freehel%v.for
-Source2: ftp://ndbserver.rutgers.edu/NDB/programs/%n%v/sel%v.for
-Source3: ftp://ndbserver.rutgers.edu/NDB/programs/%n%v/freehel.tex
-Source4: ftp://ndbserver.rutgers.edu/NDB/programs/%n%v/test.com
-Source5: ftp://ndbserver.rutgers.edu/NDB/programs/%n%v/test.inp
-Source6: ftp://ndbserver.rutgers.edu/NDB/programs/%n%v/README
+Source:  http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/freehel%v.for
+Source2: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/sel%v.for
+Source3: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/freehel.tex
+Source4: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/test.com
+Source5: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/test.inp
+Source6: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/README
 Source-MD5: 6bd8ecb84a087dfad0d3464e204e1a3f
 Source2-MD5: 559cc8a1804a7f583766749bd92bb6f5
 Source3-MD5: 2e79bba04111965eb6bf5f0917a6736d


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[cvs] dists/10.4/stable/main/finkinfo/10.4-EOL/sci freehelix.info, 1.4, 1.5

2013-08-08 Thread K.-M. Schindler
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/10.4-EOL/sci
In directory 
sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv20032/10.4/stable/main/finkinfo/10.4-EOL/sci

Modified Files:
freehelix.info 
Log Message:
freehelix: update the source URLS

Index: freehelix.info
===
RCS file: 
/cvsroot/fink/dists/10.4/stable/main/finkinfo/10.4-EOL/sci/freehelix.info,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -d -r1.4 -r1.5
--- freehelix.info  14 Jun 2013 23:12:29 -  1.4
+++ freehelix.info  8 Aug 2013 20:59:57 -   1.5
@@ -6,12 +6,12 @@
 Depends:  gcc48-shlibs
 License:  Restrictive
 
-Source: ftp://ndbserver.rutgers.edu/NDB/programs/%n%v/freehel%v.for
-Source2: ftp://ndbserver.rutgers.edu/NDB/programs/%n%v/sel%v.for
-Source3: ftp://ndbserver.rutgers.edu/NDB/programs/%n%v/freehel.tex
-Source4: ftp://ndbserver.rutgers.edu/NDB/programs/%n%v/test.com
-Source5: ftp://ndbserver.rutgers.edu/NDB/programs/%n%v/test.inp
-Source6: ftp://ndbserver.rutgers.edu/NDB/programs/%n%v/README
+Source:  http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/freehel%v.for
+Source2: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/sel%v.for
+Source3: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/freehel.tex
+Source4: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/test.com
+Source5: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/test.inp
+Source6: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/README
 Source-MD5: 6bd8ecb84a087dfad0d3464e204e1a3f
 Source2-MD5: 559cc8a1804a7f583766749bd92bb6f5
 Source3-MD5: 2e79bba04111965eb6bf5f0917a6736d


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[cvs] dists/10.4/stable/main/finkinfo/sci freehelix.info,1.8,1.9

2013-08-08 Thread K.-M. Schindler
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci
In directory 
sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv20032/10.4/stable/main/finkinfo/sci

Modified Files:
freehelix.info 
Log Message:
freehelix: update the source URLS

Index: freehelix.info
===
RCS file: /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci/freehelix.info,v
retrieving revision 1.8
retrieving revision 1.9
diff -u -d -r1.8 -r1.9
--- freehelix.info  14 Jun 2013 23:12:29 -  1.8
+++ freehelix.info  8 Aug 2013 20:59:57 -   1.9
@@ -6,12 +6,12 @@
 Depends:  gcc48-shlibs
 License:  Restrictive
 
-Source: ftp://ndbserver.rutgers.edu/NDB/programs/%n%v/freehel%v.for
-Source2: ftp://ndbserver.rutgers.edu/NDB/programs/%n%v/sel%v.for
-Source3: ftp://ndbserver.rutgers.edu/NDB/programs/%n%v/freehel.tex
-Source4: ftp://ndbserver.rutgers.edu/NDB/programs/%n%v/test.com
-Source5: ftp://ndbserver.rutgers.edu/NDB/programs/%n%v/test.inp
-Source6: ftp://ndbserver.rutgers.edu/NDB/programs/%n%v/README
+Source:  http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/freehel%v.for
+Source2: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/sel%v.for
+Source3: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/freehel.tex
+Source4: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/test.com
+Source5: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/test.inp
+Source6: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/README
 Source-MD5: 6bd8ecb84a087dfad0d3464e204e1a3f
 Source2-MD5: 559cc8a1804a7f583766749bd92bb6f5
 Source3-MD5: 2e79bba04111965eb6bf5f0917a6736d


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[cvs] dists/10.4/stable/main/finkinfo/10.4-EOL/sci freehelix.info, 1.5, 1.6

2013-08-08 Thread K.-M. Schindler
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/10.4-EOL/sci
In directory 
sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv20388/10.4/stable/main/finkinfo/10.4-EOL/sci

Modified Files:
freehelix.info 
Log Message:
freehelix: raise revision number

Index: freehelix.info
===
RCS file: 
/cvsroot/fink/dists/10.4/stable/main/finkinfo/10.4-EOL/sci/freehelix.info,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -d -r1.5 -r1.6
--- freehelix.info  8 Aug 2013 20:59:57 -   1.5
+++ freehelix.info  8 Aug 2013 21:09:35 -   1.6
@@ -1,6 +1,6 @@
 Package: freehelix
 Version: 98
-Revision: 15
+Revision: 16
 Description:  Nucleic acid helix analysis program
 BuildDepends: gcc48-compiler, fink (= 0.24.12-1)
 Depends:  gcc48-shlibs
@@ -12,7 +12,7 @@
 Source4: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/test.com
 Source5: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/test.inp
 Source6: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/README
-Source-MD5: 6bd8ecb84a087dfad0d3464e204e1a3f
+Source-MD5:  6bd8ecb84a087dfad0d3464e204e1a3f
 Source2-MD5: 559cc8a1804a7f583766749bd92bb6f5
 Source3-MD5: 2e79bba04111965eb6bf5f0917a6736d
 Source4-MD5: 718841fe4ef3a6dce5ab55a60b766b5c


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[cvs] dists/10.4/stable/main/finkinfo/10.5-EOL/sci freehelix.info, 1.2, 1.3

2013-08-08 Thread K.-M. Schindler
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/10.5-EOL/sci
In directory 
sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv20388/10.4/stable/main/finkinfo/10.5-EOL/sci

Modified Files:
freehelix.info 
Log Message:
freehelix: raise revision number

Index: freehelix.info
===
RCS file: 
/cvsroot/fink/dists/10.4/stable/main/finkinfo/10.5-EOL/sci/freehelix.info,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -d -r1.2 -r1.3
--- freehelix.info  8 Aug 2013 20:59:57 -   1.2
+++ freehelix.info  8 Aug 2013 21:09:35 -   1.3
@@ -1,6 +1,6 @@
 Package: freehelix
 Version: 98
-Revision: 15
+Revision: 16
 Description:  Nucleic acid helix analysis program
 BuildDepends: gcc48-compiler, fink (= 0.24.12-1)
 Depends:  gcc48-shlibs
@@ -12,7 +12,7 @@
 Source4: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/test.com
 Source5: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/test.inp
 Source6: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/README
-Source-MD5: 6bd8ecb84a087dfad0d3464e204e1a3f
+Source-MD5:  6bd8ecb84a087dfad0d3464e204e1a3f
 Source2-MD5: 559cc8a1804a7f583766749bd92bb6f5
 Source3-MD5: 2e79bba04111965eb6bf5f0917a6736d
 Source4-MD5: 718841fe4ef3a6dce5ab55a60b766b5c


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[cvs] dists/10.4/stable/main/finkinfo/sci freehelix.info,1.9,1.10

2013-08-08 Thread K.-M. Schindler
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci
In directory 
sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv20388/10.4/stable/main/finkinfo/sci

Modified Files:
freehelix.info 
Log Message:
freehelix: raise revision number

Index: freehelix.info
===
RCS file: /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci/freehelix.info,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -d -r1.9 -r1.10
--- freehelix.info  8 Aug 2013 20:59:57 -   1.9
+++ freehelix.info  8 Aug 2013 21:09:35 -   1.10
@@ -1,6 +1,6 @@
 Package: freehelix
 Version: 98
-Revision: 15
+Revision: 16
 Description:  Nucleic acid helix analysis program
 BuildDepends: gcc48-compiler, fink (= 0.24.12-1)
 Depends:  gcc48-shlibs
@@ -12,7 +12,7 @@
 Source4: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/test.com
 Source5: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/test.inp
 Source6: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/README
-Source-MD5: 6bd8ecb84a087dfad0d3464e204e1a3f
+Source-MD5:  6bd8ecb84a087dfad0d3464e204e1a3f
 Source2-MD5: 559cc8a1804a7f583766749bd92bb6f5
 Source3-MD5: 2e79bba04111965eb6bf5f0917a6736d
 Source4-MD5: 718841fe4ef3a6dce5ab55a60b766b5c


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[cvs] dists/10.7/stable/main/finkinfo/sci freehelix.info,1.3,1.4

2013-08-08 Thread K.-M. Schindler
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci
In directory 
sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv20388/10.7/stable/main/finkinfo/sci

Modified Files:
freehelix.info 
Log Message:
freehelix: raise revision number

Index: freehelix.info
===
RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci/freehelix.info,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- freehelix.info  8 Aug 2013 20:59:57 -   1.3
+++ freehelix.info  8 Aug 2013 21:09:35 -   1.4
@@ -1,6 +1,6 @@
 Package: freehelix
 Version: 98
-Revision: 15
+Revision: 16
 Description:  Nucleic acid helix analysis program
 BuildDepends: gcc48-compiler, fink (= 0.24.12-1)
 Depends:  gcc48-shlibs
@@ -12,7 +12,7 @@
 Source4: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/test.com
 Source5: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/test.inp
 Source6: http://ndbserver.rutgers.edu/files/ftp/NDB/programs/%n%v/README
-Source-MD5: 6bd8ecb84a087dfad0d3464e204e1a3f
+Source-MD5:  6bd8ecb84a087dfad0d3464e204e1a3f
 Source2-MD5: 559cc8a1804a7f583766749bd92bb6f5
 Source3-MD5: 2e79bba04111965eb6bf5f0917a6736d
 Source4-MD5: 718841fe4ef3a6dce5ab55a60b766b5c


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[cvs] dists/10.7/stable/main/finkinfo/libs libapr.0-shlibs.info, 1.5, 1.6

2013-08-08 Thread Daniel Johnson
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/libs
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv22017

Modified Files:
libapr.0-shlibs.info 
Log Message:
libapr.0-dev and apr-dev conflict now (share/apr).

Index: libapr.0-shlibs.info
===
RCS file: 
/cvsroot/fink/dists/10.7/stable/main/finkinfo/libs/libapr.0-shlibs.info,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -d -r1.5 -r1.6
--- libapr.0-shlibs.info8 Aug 2013 00:44:58 -   1.5
+++ libapr.0-shlibs.info8 Aug 2013 21:46:20 -   1.6
@@ -1,6 +1,6 @@
 Package: libapr.0-shlibs
 Version: 1.4.8
-Revision: 1
+Revision: 2
 
 BuildDepends: pkgconfig
 Replaces: libapr0-shlibs
@@ -54,8 +54,8 @@
 SplitOff: 
   Package: libapr.0-dev
   Depends: %N (= %v-%r), pkgconfig
-  Conflicts: apr-common ( 1:0-0), apr-ssl-common ( 1:0-0), apr-dev ( 
1:0-0), apr-ssl-dev ( 1:0-0), apr ( 1:0-0), apr-ssl ( 1:0-0), libapr-dev 
( 1:0-0)
-  Replaces: apr-common ( 1:0-0), apr-ssl-common ( 1:0-0), apr-dev ( 
1:0-0), apr-ssl-dev ( 1:0-0), apr ( 1:0-0), apr-ssl ( 1:0-0), libapr-dev 
( 1:0-0)
+  Conflicts: apr-common ( 1:0-0), apr-ssl-common ( 1:0-0), apr-dev, 
apr-ssl-dev ( 1:0-0), apr ( 1:0-0), apr-ssl ( 1:0-0), libapr-dev ( 
1:0-0)
+  Replaces: apr-common ( 1:0-0), apr-ssl-common ( 1:0-0), apr-dev, 
apr-ssl-dev ( 1:0-0), apr ( 1:0-0), apr-ssl ( 1:0-0), libapr-dev ( 
1:0-0)
   BuildDependsOnly: True
   Description: Headers and static libraries for APR
   Files: 


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[cvs] dists/10.4/stable/main/finkinfo/libs libapr.0-shlibs.info, 1.6, 1.7 apr.info, 1.8, 1.9

2013-08-08 Thread Daniel Johnson
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/libs
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv22059

Modified Files:
libapr.0-shlibs.info apr.info 
Log Message:
libapr.0-dev and apr-dev conflict now (share/apr).

Index: libapr.0-shlibs.info
===
RCS file: 
/cvsroot/fink/dists/10.4/stable/main/finkinfo/libs/libapr.0-shlibs.info,v
retrieving revision 1.6
retrieving revision 1.7
diff -u -d -r1.6 -r1.7
--- libapr.0-shlibs.info8 Aug 2013 00:45:17 -   1.6
+++ libapr.0-shlibs.info8 Aug 2013 21:46:44 -   1.7
@@ -1,6 +1,6 @@
 Package: libapr.0-shlibs
 Version: 1.4.8
-Revision: 1
+Revision: 2
 
 BuildDepends: pkgconfig
 Replaces: libapr0-shlibs
@@ -54,8 +54,8 @@
 SplitOff: 
   Package: libapr.0-dev
   Depends: %N (= %v-%r), pkgconfig
-  Conflicts: apr-common ( 1:0-0), apr-ssl-common ( 1:0-0), apr-dev ( 
1:0-0), apr-ssl-dev ( 1:0-0), apr ( 1:0-0), apr-ssl ( 1:0-0), libapr-dev 
( 1:0-0)
-  Replaces: apr-common ( 1:0-0), apr-ssl-common ( 1:0-0), apr-dev ( 
1:0-0), apr-ssl-dev ( 1:0-0), apr ( 1:0-0), apr-ssl ( 1:0-0), libapr-dev 
( 1:0-0)
+  Conflicts: apr-common ( 1:0-0), apr-ssl-common ( 1:0-0), apr-dev, 
apr-ssl-dev ( 1:0-0), apr ( 1:0-0), apr-ssl ( 1:0-0), libapr-dev ( 
1:0-0)
+  Replaces: apr-common ( 1:0-0), apr-ssl-common ( 1:0-0), apr-dev, 
apr-ssl-dev ( 1:0-0), apr ( 1:0-0), apr-ssl ( 1:0-0), libapr-dev ( 
1:0-0)
   BuildDependsOnly: True
   Description: Headers and static libraries for APR
   Files: 

Index: apr.info
===
RCS file: /cvsroot/fink/dists/10.4/stable/main/finkinfo/libs/apr.info,v
retrieving revision 1.8
retrieving revision 1.9
diff -u -d -r1.8 -r1.9
--- apr.info15 Feb 2013 02:26:39 -  1.8
+++ apr.info8 Aug 2013 21:46:44 -   1.9
@@ -1,7 +1,7 @@
 Package: apr
 Epoch: 1
 Version: 0.9.12
-Revision: 17
+Revision: 18
 Description: Apache Portable Runtime
 License: BSD
 Maintainer: Dustin Sias dus...@coretechnologies.net
@@ -82,6 +82,8 @@
   Package: apr-dev
   Depends: libapr0-shlibs (= %e:%v-%r)
   BuildDependsOnly: True
+  Conflicts: libapr.0-dev
+  Replaces: libapr.0-dev
   Files: 
 bin/apr-config
 share/apr


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[cvs] dists/10.7/stable/main/finkinfo/libs wxcocoa294-shlibs.info, 1.1, 1.2

2013-08-08 Thread Alexander Hansen
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/libs
In directory 
sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv26727/10.7/stable/main/finkinfo/libs

Modified Files:
wxcocoa294-shlibs.info 
Log Message:
Missed adding to 10.4/ in last commit.
Remove PatchScript reference (result of syncing with wxcocoa293-shlibs.info).


Index: wxcocoa294-shlibs.info
===
RCS file: 
/cvsroot/fink/dists/10.7/stable/main/finkinfo/libs/wxcocoa294-shlibs.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- wxcocoa294-shlibs.info  7 Aug 2013 02:25:16 -   1.1
+++ wxcocoa294-shlibs.info  8 Aug 2013 23:45:37 -   1.2
@@ -41,7 +41,6 @@
 
 PatchScript: 
#!/bin/sh -ev
-   patch -p0  %{PatchFile}
if [ %m = x86_64 ]
then perl -pi.bak -e 's/-framework QuickTime//' configure*
fi


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[cvs] dists/10.4/stable/main/finkinfo/libs wxcocoa294-shlibs.info, NONE, 1.1

2013-08-08 Thread Alexander Hansen
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/libs
In directory 
sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv26727/10.4/stable/main/finkinfo/libs

Added Files:
wxcocoa294-shlibs.info 
Log Message:
Missed adding to 10.4/ in last commit.
Remove PatchScript reference (result of syncing with wxcocoa293-shlibs.info).


--- NEW FILE: wxcocoa294-shlibs.info ---
Package: wxcocoa294-shlibs
Version: 2.9.4
Revision: 4
GCC: 4.0
Description: Cross-platform GUI API - mac/Cocoa version
License: GPL2/LGPL
Maintainer: Alexander Hansen alexkhan...@users.sourceforge.net

Depends: 
expat1-shlibs,
libiconv,
libjpeg9-shlibs,
libpng16-shlibs,
libtiff5-shlibs

BuildDepends: 
cctools,
expat1,
fink (= 0.28),
fink-package-precedence,
gettext-bin,
gettext-tools,
libgettext8-dev,
libiconv-dev,
libjpeg9,
libpng16,
libtiff5

Conflicts: wxgtk, wxcocoa, wxmac, wxgtk2.8, wxmac28, wxmac28-unicode, 
wxcocoa29, wxcocoa292, wxcocoa293, wxcocoa294, wxcocoa295
Replaces: wxgtk, wxcocoa, wxmac, wxgtk2.8, wxmac28, wxmac28-unicode, wxcocoa29, 
wxcocoa292, wxcocoa293, wxcocoa294, wxcocoa295

Source: mirror:sourceforge:wxwindows/wxWidgets-%v.tar.bz2
Source-MD5: f1348f740a569ce2945512d5b0e70e87
SourceDirectory: wxWidgets-%v

NoSetLDFLAGS: true
SetLIBRARY_PATH: %p/lib
SetLDFLAGS: -I%b/lib
UseMaxBuildJobs: true

PatchScript: 
#!/bin/sh -ev
if [ %m = x86_64 ]
then perl -pi.bak -e 's/-framework QuickTime//' configure*
fi
perl -pi.bak -e 's/-no-cpp-precomp//' configure*

ConfigureParams: 
--mandir=%p/share/man \
--enable-intl \
--enable-unicode \
--enable-dependency-tracking \
--with-cocoa \
--without-carbon \
--with-libpng \
--with-libjpeg \
--with-libtiff \
--without-sdl \
--with-opengl \
--without-odbc \
--with-libiconv-prefix=%p 

CompileScript: 
#!/bin/sh -ev
env LDFLAGS=-L%p/lib ./configure %c
make
fink-package-precedence --depfile-ext='\.d' .

InstallScript: 
#!/bin/sh -ev
%{default_script}
/bin/rm -rf %i/bin %i/include %i/lib/*2.9.dylib %i/lib/wx 
%i/share/aclocal %i/share/bakefile %i/share/locale
cd %i/lib
### fix install_names
for lib in baseu baseu_net baseu_xml
do
install_name_tool -id %p/lib/libwx_$lib-%v.dylib 
libwx_$lib-%v.0.0.dylib
for lib2 in baseu baseu_net baseu_xml
do
install_name_tool -change 
%i/lib/libwx_$lib2-%v.0.0.dylib \
%p/lib/libwx_$lib2-%v.dylib 
libwx_$lib-%v.0.0.dylib
done
for lib2 in adv aui core gl html media propgrid qa ribbon 
richtext stc webview xrc
do
install_name_tool -change 
%i/lib/libwx_osx_cocoau_$lib2-%v.0.0.dylib \
%p/lib/libwx_osx_cocoau_$lib2-%v.dylib 
libwx_$lib-%v.0.0.dylib

done
done 
for lib in adv aui core gl html media propgrid qa ribbon richtext stc 
webview xrc
do
install_name_tool -id %p/lib/libwx_osx_cocoau_$lib-%v.dylib \
libwx_osx_cocoau_$lib-%v.0.0.dylib
for lib2 in baseu baseu_net baseu_xml
do
install_name_tool -change 
%i/lib/libwx_$lib2-%v.0.0.dylib \
%p/lib/libwx_$lib2-%v.dylib 
libwx_osx_cocoau_$lib-%v.0.0.dylib
done
for lib2 in adv aui core gl html media propgrid qa ribbon 
richtext stc webview xrc
do
install_name_tool -change 
%i/lib/libwx_osx_cocoau_$lib2-%v.0.0.dylib \
%p/lib/libwx_osx_cocoau_$lib2-%v.dylib 
libwx_osx_cocoau_$lib-%v.0.0.dylib

done
done

Shlibs: 
%p/lib/libwx_baseu-%v.dylib 1.0.0 %n (= 2.9.4-1)
%p/lib/libwx_baseu_net-%v.dylib 1.0.0 %n (= 2.9.4-1)
%p/lib/libwx_baseu_xml-%v.dylib 1.0.0 %n (= 2.9.4-1)
%p/lib/libwx_osx_cocoau_adv-%v.dylib 1.0.0 %n (= 2.9.4-1)
%p/lib/libwx_osx_cocoau_aui-%v.dylib 1.0.0 %n (= 2.9.4-1)
%p/lib/libwx_osx_cocoau_core-%v.dylib 1.0.0 %n (= 2.9.4-1)
%p/lib/libwx_osx_cocoau_gl-%v.dylib 1.0.0 %n (= 2.9.4-1)
%p/lib/libwx_osx_cocoau_html-%v.dylib 1.0.0 %n (= 2.9.4-1)
%p/lib/libwx_osx_cocoau_media-%v.dylib 1.0.0 %n (= 2.9.4-1)
%p/lib/libwx_osx_cocoau_propgrid-%v.dylib 1.0.0 %n (= 2.9.4-1)
%p/lib/libwx_osx_cocoau_qa-%v.dylib 1.0.0 %n (= 2.9.4-1)
%p/lib/libwx_osx_cocoau_ribbon-%v.dylib 1.0.0 %n (= 2.9.4-1)
%p/lib/libwx_osx_cocoau_richtext-%v.dylib 1.0.0 %n (= 2.9.4-1)
%p/lib/libwx_osx_cocoau_stc-%v.dylib 1.0.0 %n (= 2.9.4-1)

[cvs] dists/10.4/stable/main/finkinfo/libs wxcocoa29-shlibs.info, 1.1, 1.2

2013-08-08 Thread Alexander Hansen
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/libs
In directory 
sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv31050/10.4/stable/main/finkinfo/libs

Modified Files:
wxcocoa29-shlibs.info 
Log Message:
Fix validation.


Index: wxcocoa29-shlibs.info
===
RCS file: 
/cvsroot/fink/dists/10.4/stable/main/finkinfo/libs/wxcocoa29-shlibs.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- wxcocoa29-shlibs.info   7 Aug 2013 02:25:15 -   1.1
+++ wxcocoa29-shlibs.info   9 Aug 2013 01:16:16 -   1.2
@@ -97,7 +97,7 @@
done
done
 
-   Shlibs: 
+Shlibs: 
%p/lib/libwx_baseu-2.9.1.dylib 1.0.0 %n (= 2.9.1-1)
%p/lib/libwx_baseu_net-2.9.1.dylib 1.0.0 %n (= 2.9.1-1)
%p/lib/libwx_baseu_xml-2.9.1.dylib 1.0.0 %n (= 2.9.1-1)
@@ -113,7 +113,7 @@
%p/lib/libwx_osx_cocoau_richtext-2.9.1.dylib 1.0.0 %n (= 
2.9.1-1)
%p/lib/libwx_osx_cocoau_stc-2.9.1.dylib 1.0.0 %n (= 2.9.1-1)
%p/lib/libwx_osx_cocoau_xrc-2.9.1.dylib 1.0.0 %n (= 2.9.1-1)
-   
+
 DocFiles: docs/preamble.txt docs/licence.txt docs/licendoc.txt docs/gpl.txt 
docs/lgpl.txt
 Homepage: http://www.wxwidgets.org/
 DescDetail: 


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[cvs] dists/10.7/stable/main/finkinfo/libs wxcocoa293-shlibs.info, 1.1, 1.2 wxcocoa294-shlibs.info, 1.2, 1.3

2013-08-08 Thread Alexander Hansen
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/libs
In directory 
sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv31753/10.7/stable/main/finkinfo/libs

Modified Files:
wxcocoa293-shlibs.info wxcocoa294-shlibs.info 
Log Message:
Fix Conflicts/Replaces to do the Right Thing (TM)


Index: wxcocoa294-shlibs.info
===
RCS file: 
/cvsroot/fink/dists/10.7/stable/main/finkinfo/libs/wxcocoa294-shlibs.info,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -d -r1.2 -r1.3
--- wxcocoa294-shlibs.info  8 Aug 2013 23:45:37 -   1.2
+++ wxcocoa294-shlibs.info  9 Aug 2013 01:36:49 -   1.3
@@ -1,6 +1,6 @@
 Package: wxcocoa294-shlibs
 Version: 2.9.4
-Revision: 4
+Revision: 5
 GCC: 4.0
 Description: Cross-platform GUI API - mac/Cocoa version
 License: GPL2/LGPL
@@ -27,8 +27,8 @@
libpng16,
libtiff5
 
-Conflicts: wxgtk, wxcocoa, wxmac, wxgtk2.8, wxmac28, wxmac28-unicode, 
wxcocoa29, wxcocoa292, wxcocoa293, wxcocoa294, wxcocoa295
-Replaces: wxgtk, wxcocoa, wxmac, wxgtk2.8, wxmac28, wxmac28-unicode, 
wxcocoa29, wxcocoa292, wxcocoa293, wxcocoa294, wxcocoa295
+Conflicts: wxcocoa294
+Replaces: wxcocoa294
 
 Source: mirror:sourceforge:wxwindows/wxWidgets-%v.tar.bz2
 Source-MD5: f1348f740a569ce2945512d5b0e70e87

Index: wxcocoa293-shlibs.info
===
RCS file: 
/cvsroot/fink/dists/10.7/stable/main/finkinfo/libs/wxcocoa293-shlibs.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- wxcocoa293-shlibs.info  7 Aug 2013 02:25:16 -   1.1
+++ wxcocoa293-shlibs.info  9 Aug 2013 01:36:49 -   1.2
@@ -1,6 +1,6 @@
 Package: wxcocoa293-shlibs
 Version: 2.9.3
-Revision: 6
+Revision: 7
 GCC: 4.0
 Description: Cross-platform GUI API - mac/Cocoa version
 License: GPL2/LGPL
@@ -27,8 +27,8 @@
libpng16,
libtiff5
 
-Conflicts: wxgtk, wxcocoa, wxmac, wxgtk2.8, wxmac28, wxmac28-unicode, 
wxcocoa29, wxcocoa292, wxcocoa293, wxcocoa294, wxcocoa295
-Replaces: wxgtk, wxcocoa, wxmac, wxgtk2.8, wxmac28, wxmac28-unicode, 
wxcocoa29, wxcocoa292, wxcocoa293, wxcocoa294, wxcocoa295
+Conflicts: wxcocoa293
+Replaces: wxcocoa293
 
 Source: mirror:sourceforge:wxwindows/wxWidgets-%v.tar.bz2
 Source-MD5: 6b6003713289ea4d3cd9b49c5db5b721


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[cvs] dists/10.4/stable/main/finkinfo/libs wxcocoa29-shlibs.info, 1.2, 1.3 wxcocoa292-shlibs.info, 1.1, 1.2 wxcocoa293-shlibs.info, 1.1, 1.2 wxcocoa294-shlibs.info, 1.1, 1.2

2013-08-08 Thread Alexander Hansen
Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/libs
In directory 
sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv31753/10.4/stable/main/finkinfo/libs

Modified Files:
wxcocoa29-shlibs.info wxcocoa292-shlibs.info 
wxcocoa293-shlibs.info wxcocoa294-shlibs.info 
Log Message:
Fix Conflicts/Replaces to do the Right Thing (TM)


Index: wxcocoa294-shlibs.info
===
RCS file: 
/cvsroot/fink/dists/10.4/stable/main/finkinfo/libs/wxcocoa294-shlibs.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- wxcocoa294-shlibs.info  8 Aug 2013 23:45:37 -   1.1
+++ wxcocoa294-shlibs.info  9 Aug 2013 01:36:49 -   1.2
@@ -1,6 +1,6 @@
 Package: wxcocoa294-shlibs
 Version: 2.9.4
-Revision: 4
+Revision: 5
 GCC: 4.0
 Description: Cross-platform GUI API - mac/Cocoa version
 License: GPL2/LGPL
@@ -26,8 +26,8 @@
libpng16,
libtiff5
 
-Conflicts: wxgtk, wxcocoa, wxmac, wxgtk2.8, wxmac28, wxmac28-unicode, 
wxcocoa29, wxcocoa292, wxcocoa293, wxcocoa294, wxcocoa295
-Replaces: wxgtk, wxcocoa, wxmac, wxgtk2.8, wxmac28, wxmac28-unicode, 
wxcocoa29, wxcocoa292, wxcocoa293, wxcocoa294, wxcocoa295
+Conflicts: wxcocoa294
+Replaces: wxcocoa294
 
 Source: mirror:sourceforge:wxwindows/wxWidgets-%v.tar.bz2
 Source-MD5: f1348f740a569ce2945512d5b0e70e87

Index: wxcocoa293-shlibs.info
===
RCS file: 
/cvsroot/fink/dists/10.4/stable/main/finkinfo/libs/wxcocoa293-shlibs.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- wxcocoa293-shlibs.info  7 Aug 2013 02:25:15 -   1.1
+++ wxcocoa293-shlibs.info  9 Aug 2013 01:36:49 -   1.2
@@ -1,6 +1,6 @@
 Package: wxcocoa293-shlibs
 Version: 2.9.3
-Revision: 6
+Revision: 7
 GCC: 4.0
 Description: Cross-platform GUI API - mac/Cocoa version
 License: GPL2/LGPL
@@ -26,8 +26,8 @@
libpng16,
libtiff5
 
-Conflicts: wxgtk, wxcocoa, wxmac, wxgtk2.8, wxmac28, wxmac28-unicode, 
wxcocoa29, wxcocoa292, wxcocoa293, wxcocoa294, wxcocoa295
-Replaces: wxgtk, wxcocoa, wxmac, wxgtk2.8, wxmac28, wxmac28-unicode, 
wxcocoa29, wxcocoa292, wxcocoa293, wxcocoa294, wxcocoa295
+Conflicts: wxcocoa293
+Replaces: wxcocoa293
 
 Source: mirror:sourceforge:wxwindows/wxWidgets-%v.tar.bz2
 Source-MD5: 6b6003713289ea4d3cd9b49c5db5b721

Index: wxcocoa292-shlibs.info
===
RCS file: 
/cvsroot/fink/dists/10.4/stable/main/finkinfo/libs/wxcocoa292-shlibs.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- wxcocoa292-shlibs.info  7 Aug 2013 02:25:15 -   1.1
+++ wxcocoa292-shlibs.info  9 Aug 2013 01:36:49 -   1.2
@@ -1,6 +1,6 @@
 Package: wxcocoa292-shlibs
 Version: 2.9.2
-Revision: 6
+Revision: 7
 GCC: 4.0
 Description: Cross-platform GUI API - mac/Cocoa version
 License: GPL2/LGPL
@@ -26,8 +26,8 @@
libpng16,
libtiff5
 
-Conflicts: wxgtk, wxcocoa, wxmac, wxgtk2.8, wxmac28, wxmac28-unicode, 
wxcocoa29, wxcocoa292, wxcocoa293, wxcocoa294, wxcocoa295
-Replaces: wxgtk, wxcocoa, wxmac, wxgtk2.8, wxmac28, wxmac28-unicode, 
wxcocoa29, wxcocoa292, wxcocoa293, wxcocoa294, wxcocoa295
+Conflicts: wxcocoa292
+Replaces: wxcocoa292
 
 Source: mirror:sourceforge:wxwindows/wxWidgets-%v.tar.bz2
 Source-MD5: d6cec5bd331ba90b74c1e2fcb0563620

Index: wxcocoa29-shlibs.info
===
RCS file: 
/cvsroot/fink/dists/10.4/stable/main/finkinfo/libs/wxcocoa29-shlibs.info,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -d -r1.2 -r1.3
--- wxcocoa29-shlibs.info   9 Aug 2013 01:16:16 -   1.2
+++ wxcocoa29-shlibs.info   9 Aug 2013 01:36:49 -   1.3
@@ -1,6 +1,6 @@
 Package: wxcocoa29-shlibs
 Version: 2.9.1
-Revision: 6
+Revision: 7
 Epoch: 1
 GCC: 4.0
 Description: Cross-platform GUI API - mac/Cocoa version
@@ -27,8 +27,8 @@
libpng16,
libtiff5
 
-Conflicts: wxgtk, wxcocoa, wxmac, wxgtk2.8, wxmac28, wxmac28-unicode, 
wxcocoa29, wxcocoa292, wxcocoa293, wxcocoa294, wxcocoa295
-Replaces: wxgtk, wxcocoa, wxmac, wxgtk2.8, wxmac28, wxmac28-unicode, 
wxcocoa29, wxcocoa292, wxcocoa293, wxcocoa294, wxcocoa295
+Conflicts: wxcocoa29
+Replaces: wxcocoa29
 
 Source: mirror:sourceforge:wxwindows/wxWidgets-%v.tar.bz2
 Source-MD5: 81c20d7b2ba31becb18e467dbe09be8f


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[cvs] dists/10.7/stable/main/finkinfo/sci coot.info, 1.24, 1.25 coot.patch, 1.1, 1.2 clipper.info, 1.5, 1.6 mmdb.info, 1.6, 1.7 ssm.info, 1.5, 1.6

2013-08-08 Thread William Scott
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv4957

Modified Files:
coot.info coot.patch clipper.info mmdb.info ssm.info 
Log Message:
updates for coot dependencies

Index: coot.patch
===
RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci/coot.patch,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- coot.patch  4 Aug 2011 14:10:11 -   1.1
+++ coot.patch  9 Aug 2013 04:09:02 -   1.2
@@ -33,3 +33,327 @@
  
  ;; run raster3d
  (define render-image
+
+
+diff -crB ./src/graphics-info.h ../coot-patched/src/graphics-info.h
+*** ./src/graphics-info.h  2013-04-27 16:04:58.0 +0200
+--- ../coot-patched/src/graphics-info.h2013-07-25 04:09:17.861265837 
+0200
+***
+*** 3307,3313 
+ short int move_copy_of_imol2_flag);
+
+  #ifdef HAVE_SSMLIB
+!void print_ssm_sequence_alignment(CSSMAlign *SSMAlign,
+atom_selection_container_t asc_ref,
+atom_selection_container_t asc_mov,
+PCAtom *atom_selection1, 
+--- 3307,3313 
+ short int move_copy_of_imol2_flag);
+
+  #ifdef HAVE_SSMLIB
+!void print_ssm_sequence_alignment(ssm::Align *SSMAlign,
+atom_selection_container_t asc_ref,
+atom_selection_container_t asc_mov,
+PCAtom *atom_selection1, 
+***
+*** 3315,3321 
+int n_selected_atoms_1, int 
n_selected_atoms_2, 
+short int move_copy_of_imol2_flag);
+
+!void make_and_print_horizontal_ssm_sequence_alignment(CSSMAlign *SSMAlign,
+
atom_selection_container_t asc_ref,
+
atom_selection_container_t asc_mov,
+PCAtom 
*atom_selection1, 
+--- 3315,3321 
+int n_selected_atoms_1, int 
n_selected_atoms_2, 
+short int move_copy_of_imol2_flag);
+
+!void make_and_print_horizontal_ssm_sequence_alignment(ssm::Align 
*SSMAlign,
+
atom_selection_container_t asc_ref,
+
atom_selection_container_t asc_mov,
+PCAtom 
*atom_selection1, 
+***
+*** 3325,3331 
+ void print_horizontal_ssm_sequence_alignment(std::pairstd::string, 
std::string aligned_sequences) const;
+
+ std::pairstd::string, std::string
+!  get_horizontal_ssm_sequence_alignment(CSSMAlign *SSMAlign,
+  atom_selection_container_t asc_ref,
+  atom_selection_container_t asc_mov,
+  PCAtom *atom_selection1, PCAtom 
*atom_selection2,
+--- 3325,3331 
+ void print_horizontal_ssm_sequence_alignment(std::pairstd::string, 
std::string aligned_sequences) const;
+
+ std::pairstd::string, std::string
+!  get_horizontal_ssm_sequence_alignment(ssm::Align *SSMAlign,
+  atom_selection_container_t asc_ref,
+  atom_selection_container_t asc_mov,
+  PCAtom *atom_selection1, PCAtom 
*atom_selection2,
+diff -crB ./src/graphics-info-superpose.cc 
../coot-patched/src/graphics-info-superpose.cc
+*** ./src/graphics-info-superpose.cc   2013-01-16 17:40:31.0 +0100
+--- ../coot-patched/src/graphics-info-superpose.cc 2013-07-25 
04:42:47.876256551 +0200
+***
+*** 22,27 
+--- 22,31 
+  #include Python.h  // before system includes to stop POSIX_C_SOURCE 
redefined problems
+  #endif
+
++ #ifdef HAVE_SSMLIB
++ #include ssm_defs.h
++ #endif 
++ 
+  #if defined _MSC_VER
+  #include windows.h
+  #endif
+***
+*** 168,179 
+
+  #ifdef HAVE_SSMLIB
+
+!int precision = SSMP_Normal;
+!int connectivity = CSSC_Flexible;
+
+ // probably not necessary, not sure:
+!SetSSConnectivityCheck ( CSSC_Flexible );
+!SetSSMatchPrecision( SSMP_Normal );
+
+ if (asc_ref.n_selected_atoms  0) { 
+if (asc_mov.n_selected_atoms  0) {
+--- 172,183 
+
+  #ifdef HAVE_SSMLIB
+
+!ssm::PRECISION precision = ssm::PREC_Normal;
+!ssm::CONNECTIVITY connectivity = ssm::CONNECT_Flexible;
+
+ // probably not necessary, not sure:
+!ssm::SetConnectivityCheck ( ssm::CONNECT_Flexible );
+!ssm::SetMatchPrecision( ssm::PREC_Normal );
+
+ if