[cvs] dists/10.4/unstable/main/finkinfo/sci gromacs.info,1.6,1.7

2008-10-23 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv25355

Modified Files:
gromacs.info 
Log Message:
update to gromacs 4.0

Index: gromacs.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/gromacs.info,v
retrieving revision 1.6
retrieving revision 1.7
diff -u -d -r1.6 -r1.7
--- gromacs.info9 Mar 2008 01:03:41 -   1.6
+++ gromacs.info23 Oct 2008 16:10:13 -  1.7
@@ -1,5 +1,5 @@
 Package: gromacs
-Version: 3.3.3
+Version: 4.0
 Revision: 1000
 Distribution: 10.4, 10.5
 Depends: %N-shlibs (= %v-%r), fftw3-shlibs, x11, openmotif3-shlibs
@@ -10,7 +10,7 @@
 CustomMirror: 
 Primary: ftp://ftp.gromacs.org/pub/gromacs/
 
-Source-MD5: 33f5f434d69b45bc51c5af36f5719618
+Source-MD5: bfc18a2ecc998f542438316b9148b7ff
 ConfigureParams: --enable-shared --prefix=%p --exec-prefix=%p --mandir=%p/share
 DocFiles: AUTHORS COPYING README
 PatchScript: 
@@ -35,17 +35,17 @@
 Package: %N-shlibs
 Depends: fftw3-shlibs, x11, openmotif3-shlibs
 Files: 
-   lib/libgmx.4.0.0.dylib
-lib/libgmx.4.dylib
-lib/libgmxana.4.0.0.dylib
-lib/libgmxana.4.dylib
-lib/libmd.4.0.0.dylib
-lib/libmd.4.dylib
+   lib/libgmx.5.0.0.dylib
+lib/libgmx.5.dylib
+lib/libgmxana.5.0.0.dylib
+lib/libgmxana.5.dylib
+lib/libmd.5.0.0.dylib
+lib/libmd.5.dylib
 
 Shlibs: 
-%p/lib/libgmx.4.dylib 5.0.0 %n (= 3.3-1)
-%p/lib/libgmxana.4.dylib 5.0.0 %n (= 3.3-1)
-%p/lib/libmd.4.dylib 5.0.0 %n (= 3.3-1)
+%p/lib/libgmx.5.dylib 6.0.0 %n (= 4.0-1000)
+%p/lib/libgmxana.5.dylib 6.0.0 %n (= 4.0-1000)
+%p/lib/libmd.5.dylib 6.0.0 %n (= 4.0-1000)
 
 DocFiles: AUTHORS COPYING README
 


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[cvs] dists/10.4/unstable/main/finkinfo/sci gromacs-mpi.info,1.7,1.8

2008-10-23 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv25421

Modified Files:
gromacs-mpi.info 
Log Message:
update to gromacs 4.0

Index: gromacs-mpi.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/gromacs-mpi.info,v
retrieving revision 1.7
retrieving revision 1.8
diff -u -d -r1.7 -r1.8
--- gromacs-mpi.info9 Mar 2008 01:04:08 -   1.7
+++ gromacs-mpi.info23 Oct 2008 16:10:40 -  1.8
@@ -1,6 +1,6 @@
 Info2: 
 Package: gromacs-mpi-%type_pkg[handler]
-Version: 3.3.3
+Version: 4.0
 Revision: 1000
 Distribution: 10.4, 10.5
 Type: handler (lammpi openmpi)
@@ -14,7 +14,7 @@
 CustomMirror: 
  Primary: ftp://ftp.gromacs.org/pub/gromacs/
 
-Source-MD5: 33f5f434d69b45bc51c5af36f5719618
+Source-MD5: bfc18a2ecc998f542438316b9148b7ff
 ConfigureParams: --enable-shared --prefix=%p --exec-prefix=%p 
--mandir=%p/share  --enable-mpi --program-suffix=_mpi
 DocFiles: AUTHORS COPYING README
 SetCPPFLAGS: -I%p/include/%type_raw[handler]
@@ -37,14 +37,14 @@
 Replaces: gromacs-mpi-shlibs, gromacs-mpi-lammpi-shlibs, 
gromacs-mpi-openmpi-shlibs
 Depends: (%type_pkg[handler] = lammpi) lammpi (= 7.1.2-1000), 
(%type_pkg[handler] = openmpi) openmpi, fftw3-shlibs
 Files: 
-   lib/libgmx_mpi.4.0.0.dylib
-   lib/libgmx_mpi.4.dylib
-   lib/libmd_mpi.4.0.0.dylib
-   lib/libmd_mpi.4.dylib
+   lib/libgmx_mpi.5.0.0.dylib
+   lib/libgmx_mpi.5.dylib
+   lib/libmd_mpi.5.0.0.dylib
+   lib/libmd_mpi.5.dylib
 
 Shlibs: 
-   %p/lib/libgmx_mpi.4.dylib 5.0.0 %n (= 3.3-1)
-   %p/lib/libmd_mpi.4.dylib 5.0.0 %n (= 3.3-1)
+   %p/lib/libgmx_mpi.5.dylib 6.0.0 %n (= 4.0-1000)
+   %p/lib/libmd_mpi.5.dylib 6.0.0 %n (= 4.0-1000)
 
 DocFiles: AUTHORS COPYING README
  


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[cvs] dists/10.4/unstable/main/finkinfo/sci gromacs-mpi.patch, 1.2, NONE

2008-10-23 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv25732

Removed Files:
gromacs-mpi.patch 
Log Message:
remove gromacs-mpi.patch

--- gromacs-mpi.patch DELETED ---


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[cvs] dists/10.4/unstable/main/finkinfo/devel openmpi.info,1.9,1.10

2008-10-23 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/devel
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv28761

Modified Files:
openmpi.info 
Log Message:
update to 1.2.8

Index: openmpi.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/devel/openmpi.info,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -d -r1.9 -r1.10
--- openmpi.info17 May 2008 19:20:45 -  1.9
+++ openmpi.info23 Oct 2008 17:02:39 -  1.10
@@ -1,6 +1,6 @@
 Package: openmpi
-Version: 1.2.6
-Revision: 1001
+Version: 1.2.8
+Revision: 1000
 GCC: 4.0
 Description: MPI implementation for parallel computing
 License: BSD
@@ -10,7 +10,7 @@
 BuildConflicts: lammpi ( 7.1.2-1000), lammpi-shlibs ( 7.1.2-1000), 
lammpi-dev
 Conflicts: lammpi ( 7.1.2-1000), lammpi-shlibs ( 7.1.2-1000), lammpi-dev  
( 7.1.2-1000)
 Source: http://www.open-mpi.org/software/ompi/v1.2/downloads/openmpi-%v.tar.bz2
-Source-MD5: f126793b68e71f5ec4a192c40675af2d
+Source-MD5: 7f2d5af02101c5f01173f4f6de296549
 ConfigureParams: --prefix=%p --libexecdir=%p/lib/%n --datadir=%p/share/doc/%n 
--sysconfdir=%p/etc/%n --sharedstatedir=%p/var/%n/shared 
--localstatedir=%p/var/%n/local --libdir=%p/lib/%n --includedir=%p/include 
--infodir=%p/share/info --mandir=%p/share/man/%n --enable-shared 
--enable-static --disable-dependency-tracking FFLAGS=-O3 --with-devel-headers
 InstallScript: 
 #!/bin/sh -ev


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[cvs] dists/10.4/unstable/main/finkinfo/sci relax-py.info,1.4,1.5

2008-10-24 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv5340

Modified Files:
relax-py.info 
Log Message:
update relax-py to 1.3.2

Index: relax-py.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/relax-py.info,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -d -r1.4 -r1.5
--- relax-py.info   16 Aug 2008 21:36:17 -  1.4
+++ relax-py.info   24 Oct 2008 22:29:53 -  1.5
@@ -1,13 +1,13 @@
 Info2: 
 Package: relax-py%type_pkg[python]
-Version: 1.3.0
-Revision: 3
+Version: 1.3.2
+Revision: 1
 Type: python (2.4 2.5)
 Source: http://download.gna.org/relax/relax-%v.src.tar.bz2
-Source-MD5: ae89221310d0c2ce84f5235d847f1001
+Source-MD5: b4ef915dfc3981a15607124f0513e120
 SourceDirectory: relax-%v
-Depends: python%type_pkg[python], numeric-py%type_pkg[python], 
scientificpython-py%type_pkg[python]
-BuildDepends: python%type_pkg[python], scons, numeric-py%type_pkg[python], 
scientificpython-py%type_pkg[python]
+Depends: python%type_pkg[python], numeric-py%type_pkg[python], 
scientificpython-py%type_pkg[python], minfx-py%type_pkg[python]
+BuildDepends: python%type_pkg[python], scons, numeric-py%type_pkg[python], 
scientificpython-py%type_pkg[python], minfx-py%type_pkg[python]
 Conflicts: relax-py24, relax-py25
 Replaces: relax-py24, relax-py25
 PatchScript: 


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[cvs] dists/10.4/unstable/main/finkinfo/sci minfx-py.info,NONE,1.1

2008-10-24 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv5253

Added Files:
minfx-py.info 
Log Message:
add minfx-py package

--- NEW FILE: minfx-py.info ---
Info2: 
Package: minfx-py%type_pkg[python]
Version: 1.0.1
Revision: 1
Type: python (2.4 2.5)
Maintainer: Jack Howarth [EMAIL PROTECTED]
Depends: python%type_pkg[python]
BuildDepends: python%type_pkg[python]
Source: http://download.gna.org/minfx/minfx-%v.zip
Source-MD5: 4274943bb7c83335a1200ef6746140b6
CompileScript: 

InstallScript: 
 %p/bin/python%type_raw[python] setup.py install --root %d

License: GPL
DocFiles: COPYING
Description: The minfx optimisation library
DescDetail: 
The minfx project is a python package for numerical optimisation, 
being a large collection of standard minimisation algorithms. The 
name minfx is simply a shortening of the mathematical expression min f(x).

Homepage: https://gna.org/projects/minfx/



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[cvs] dists/10.4/unstable/main/finkinfo/sci sparky-py.info,1.11,1.12

2008-11-04 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv27837

Modified Files:
sparky-py.info 
Log Message:
update to support python26

Index: sparky-py.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/sparky-py.info,v
retrieving revision 1.11
retrieving revision 1.12
diff -u -d -r1.11 -r1.12
--- sparky-py.info  16 Aug 2008 23:38:32 -  1.11
+++ sparky-py.info  4 Nov 2008 12:00:34 -   1.12
@@ -1,17 +1,17 @@
 Info2: 
 Package: sparky-py%type_pkg[python]
 Version: 3.115
-Revision: 1001
+Revision: 1002
 GCC: 4.0
 Maintainer: Jack Howarth [EMAIL PROTECTED]
-Type: python (2.3 2.4 2.5)
+Type: python (2.3 2.4 2.5 2.6)
 Source: http://www.cgl.ucsf.edu/home/sparky/distrib-%v/sparky-source-%v.tar.gz
 Source-MD5: cbc10f03e823b38969822353687b8aa0
 SourceDirectory: sparky
 Depends: python%type_pkg[python], tcltk, x11
 BuildDepends: python%type_pkg[python], tcltk-dev, x11-dev
-Conflicts: sparky-py22, sparky-py23, sparky-py24, sparky-py25
-Replaces: sparky-py22, sparky-py23, sparky-py24, sparky-py25
+Conflicts: sparky-py22, sparky-py23, sparky-py24, sparky-py25, sparky-py26
+Replaces: sparky-py22, sparky-py23, sparky-py24, sparky-py25, sparky-py26
 PatchScript: 
 sed 's|@FINKPREFIX@|%p|g' %a/sparky-py.patch | sed 's|@BUILDDIR@|%b|g' | sed 
's|@FINKDESTDIR@|%d|g' | sed 's|2.X|%type_raw[python]|g' |sed 
's|sparky-py2X|sparky-py%type_pkg[python]|g' | patch -p1
 perl -ni -e 'print unless /LIBRARY_PATH/' bin/sparky


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[cvs] dists/10.4/unstable/main/finkinfo/sci gromacs.info,1.8,1.9

2008-11-21 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv27453

Modified Files:
gromacs.info 
Log Message:
update to 4.0.2

Index: gromacs.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/gromacs.info,v
retrieving revision 1.8
retrieving revision 1.9
diff -u -d -r1.8 -r1.9
--- gromacs.info28 Oct 2008 04:35:23 -  1.8
+++ gromacs.info21 Nov 2008 12:36:06 -  1.9
@@ -1,5 +1,5 @@
 Package: gromacs
-Version: 4.0
+Version: 4.0.2
 Revision: 1000
 Depends: %N-shlibs (= %v-%r), fftw3-shlibs, x11, openmotif3-shlibs
 BuildDepends: fftw3, x11-dev
@@ -9,7 +9,7 @@
 CustomMirror: 
 Primary: ftp://ftp.gromacs.org/pub/gromacs/
 
-Source-MD5: bfc18a2ecc998f542438316b9148b7ff
+Source-MD5: 7a9eedf9ef365d32cd01355b8950ddc5
 ConfigureParams: --enable-shared --prefix=%p --exec-prefix=%p --mandir=%p/share
 DocFiles: AUTHORS COPYING README
 PatchScript: 


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[cvs] dists/10.4/unstable/main/finkinfo/sci gromacs-mpi.info, 1.9, 1.10

2008-11-21 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv27530

Modified Files:
gromacs-mpi.info 
Log Message:
update to 4.0.2

Index: gromacs-mpi.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/gromacs-mpi.info,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -d -r1.9 -r1.10
--- gromacs-mpi.info28 Oct 2008 04:35:23 -  1.9
+++ gromacs-mpi.info21 Nov 2008 12:36:45 -  1.10
@@ -1,6 +1,6 @@
 Info2: 
 Package: gromacs-mpi-%type_pkg[handler]
-Version: 4.0
+Version: 4.0.2
 Revision: 1000
 Type: handler (lammpi openmpi)
 Depends: gromacs (= %v), %N-shlibs (= %v-%r), fftw3-shlibs, x11, 
openmotif3-shlibs, (%type_pkg[handler] = lammpi) lammpi (= 7.1.2-1000), 
(%type_pkg[handler] = openmpi) openmpi 
@@ -13,7 +13,7 @@
 CustomMirror: 
  Primary: ftp://ftp.gromacs.org/pub/gromacs/
 
-Source-MD5: bfc18a2ecc998f542438316b9148b7ff
+Source-MD5: 7a9eedf9ef365d32cd01355b8950ddc5
 ConfigureParams: --enable-shared --prefix=%p --exec-prefix=%p 
--mandir=%p/share  --enable-mpi --program-suffix=_mpi
 DocFiles: AUTHORS COPYING README
 SetCPPFLAGS: -I%p/include/%type_raw[handler]


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[cvs] dists/10.4/unstable/main/finkinfo/x11 openmotif4.info,1.4,1.5

2008-12-28 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv13599

Modified Files:
openmotif4.info 
Log Message:
update to 2.3.1-1 tarball

Index: openmotif4.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11/openmotif4.info,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -d -r1.4 -r1.5
--- openmotif4.info 11 Jul 2008 02:01:03 -  1.4
+++ openmotif4.info 28 Dec 2008 22:25:54 -  1.5
@@ -1,20 +1,23 @@
 Package: openmotif4
-Version: 2.3.0
-Revision: 3
-Source: ftp://ftp.ics.com/openmotif/2.3/%v/openmotif-%v.tar.gz
-Source-MD5: 99d0ecb84d3504da421021a19ff70500
-Patch: %n.patch
+Version: 2.3.1
+Revision: 1
+Source: ftp://ftp.ics.com/openmotif/2.3/%v/openmotif-%v-1.tar.gz
+Source-MD5: 1372108f50f3554ee2f28367ff76bd32
+PatchFile: %n.patch
+PatchFile-MD5: 75bcd0954ccdb5ba65740aca9c01f307
 PatchScript:  
+  patch -p1  %{PatchFile}
   perl -pi.bak -e 's,-flat_namespace -undefined suppress,-undefined 
dynamic_lookup,g' configure
   perl -pi.bak -e s;recipient's;recipients; tools/wml/motif.wml
   perl -pi -e 's/hardcode_direct=yes/hardcode_direct=no/g' configure
   perl -pi -e s|iconv_open|libiconv_open|g configure
 
-BuildDepends: x11-dev, libjpeg, libpng3, libiconv-dev
+BuildDepends: x11-dev, libjpeg, libpng3, libiconv-dev, fink (= 0.24.12)
 Depends:  x11, %N-shlibs (= %v-%r), libjpeg-shlibs, libpng3-shlibs, libiconv
 Conflicts: lesstif, lesstif-dev, openmotif3
 Replaces: lesstif, lesstif-dev, openmotif3
 BuildDependsOnly: True
+SourceDirectory: openmotif-%v
 NoSetMAKEFLAGS: true
 SetCFLAGS: -I%p/include -DXNO_MTSAFE_STRINGAPI -DXNO_MTSAFE_PWDAPI 
-DXNO_MTSAFE_TIMEAPI
 SetLIBS: -L%p/lib -L/usr/X11R6/lib -lXt


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[cvs] dists/10.4/unstable/main/finkinfo/x11 openmotif4.patch,1.2,1.3

2008-12-28 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv13652

Modified Files:
openmotif4.patch 
Log Message:
update to 2.3.1-1 tarball

Index: openmotif4.patch
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11/openmotif4.patch,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -d -r1.2 -r1.3
--- openmotif4.patch4 Jul 2008 18:13:16 -   1.2
+++ openmotif4.patch28 Dec 2008 22:26:22 -  1.3
@@ -1,68 +1,66 @@
 openmotif-2.3.0.orig/Makefile.in   2007-08-09 03:27:57.0 -0400
-+++ openmotif-2.3.0/Makefile.in2008-04-25 22:31:30.0 -0400
-@@ -249,8 +249,7 @@
-  include \
-  tools \
-  clients \
-- doc \
-- demos
-+ doc
- 
- AUTOMAKE_OPTIONS = 1.4
- all: all-recursive
 openmotif-2.3.0.orig/tools/wml/Makefile.in 2007-08-09 03:27:56.0 
-0400
-+++ openmotif-2.3.0/tools/wml/Makefile.in  2008-04-25 22:34:46.0 
-0400
-@@ -270,7 +270,7 @@
- wmluiltok_SOURCES = wmluiltok.l
- wmluiltok_LDADD = @LEXLIB@
- wml_SOURCES = wml.c
--wml_LDADD = -L. -lwml
-+wml_LDADD = libwml.a
+--- openmotif-2.3.1/tools/wml/Makefile.in.orig 2008-12-28 16:45:10.0 
-0500
 openmotif-2.3.1/tools/wml/Makefile.in  2008-12-28 16:50:19.0 
-0500
+@@ -72,10 +72,10 @@
+ depcomp = $(SHELL) $(top_srcdir)/depcomp
+ am__depfiles_maybe = depfiles
+ COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
+-  $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
++  $(CPPFLAGS) $(AM_CFLAGS)
+ LTCOMPILE = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
+   --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) \
+-  $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
++  $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS)
+ CCLD = $(CC)
+ LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
+   --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) \
+@@ -268,7 +268,7 @@
+ wml_LDADD = -L. -lwml
+ wml_DEPENDENCIES = libwml.a
  wmldbcreate_LDADD = ../../lib/Xm/libXm.la
- INCLUDES = -I../../lib -I$(srcdir)/../../lib -I$(srcdir)/../../include 
${X_CFLAGS} 
+-INCLUDES = -I../../lib -I$(srcdir)/../../lib -I$(srcdir)/../../include 
${X_CFLAGS} 
++INCLUDES = -I../../lib -I$(srcdir)/../../lib -I$(srcdir)/../../include 
${CFLAGS} ${X_CFLAGS} 
  noinst_LIBRARIES = libwml.a
 openmotif-2.3.0/configure.org  2008-07-03 09:55:51.0 -0400
-+++ openmotif-2.3.0/configure  2008-07-03 10:01:04.0 -0400
-@@ -21391,9 +21391,9 @@
-   lt_save_CFLAGS=$CFLAGS
- lt_save_CPPFLAGS=$CPPFLAGS
- lt_save_LIBS=$LIBS
--LIBS=$X_LIBS -lXt $X_PRE_LIBS -lX11 $X_EXTRA_LIBS $LIBS
--CFLAGS=$X_CFLAGS $CFLAGS
--CPPFLAGS=$X_CFLAGS $CPPFLAGS
-+LIBS=$LIBS $X_LIBS -lXt $X_PRE_LIBS -lX11 $X_EXTRA_LIBS
-+CFLAGS=$CFLAGS $X_CFLAGS
-+CPPFLAGS=$CPPFLAGS $X_CFLAGS
- if test $cross_compiling = yes; then
-   lt_cv_xthreads=dunno
- else
-@@ -21777,8 +21777,8 @@
+ libwml_a_SOURCES = wmlparse.y wml.c wmloutkey.c wmlouth.c wmloutmm.c 
wmloutp1.c wmlresolve.c wmlsynbld.c wmlutils.c
+ all: all-am
+@@ -373,18 +373,18 @@
+ @am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $
  
- save_LIBS=$LIBS
- save_CFLAGS=$CFLAGS
--LIBS=$X_LIBS $LIBS
--CFLAGS=$X_CFLAGS $CFLAGS
-+LIBS=$LIBS $X_LIBS
-+CFLAGS=$CFLAGS $X_CFLAGS
+ wmldbcreate.o: $(srcdir)/wmldbcreate.c
+...@am__fastdepcc_true@$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) 
$(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) -MT wmldbcreate.o -MD -MP -MF 
$(DEPDIR)/wmldbcreate.Tpo -c -o wmldbcreate.o `test -f 
'$(srcdir)/wmldbcreate.c' || echo '$(srcdir)/'`$(srcdir)/wmldbcreate.c
+...@am__fastdepcc_true@$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) 
$(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) -MT wmldbcreate.o -MD -MP -MF 
$(DEPDIR)/wmldbcreate.Tpo -c -o wmldbcreate.o `test -f 
'$(srcdir)/wmldbcreate.c' || echo '$(srcdir)/'`$(srcdir)/wmldbcreate.c
+ @am__fastdepCC_TRUE@  mv -f $(DEPDIR)/wmldbcreate.Tpo $(DEPDIR)/wmldbcreate.Po
+ @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$(srcdir)/wmldbcreate.c' 
object='wmldbcreate.o' libtool=no @AMDEPBACKSLASH@
+ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) 
$(depcomp) @AMDEPBACKSLASH@
+...@am__fastdepcc_false@   $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) 
$(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) -c -o wmldbcreate.o `test -f 
'$(srcdir)/wmldbcreate.c' || echo '$(srcdir)/'`$(srcdir)/wmldbcreate.c
+...@am__fastdepcc_false@   $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) 
$(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) -c -o wmldbcreate.o `test -f 
'$(srcdir)/wmldbcreate.c' || echo '$(srcdir)/'`$(srcdir)/wmldbcreate.c
  
- for ac_header in X11/Xmu/Editres.h
- do
 openmotif-2.3.0/lib/Mrm/Makefile.in.orig   2007-08-09 03:27:54.0 
-0400
-+++ openmotif-2.3.0/lib/Mrm/Makefile.in2008-07-03 13:16:15.0 
-0400
-@@ 

[cvs] dists/10.4/unstable/main/finkinfo/sci pymol-py.patch,1.7,1.8

2008-12-30 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv25343

Modified Files:
pymol-py.patch 
Log Message:
limit graphic artifacts in xorg 2.3.2

Index: pymol-py.patch
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/pymol-py.patch,v
retrieving revision 1.7
retrieving revision 1.8
diff -u -d -r1.7 -r1.8
--- pymol-py.patch  25 Jun 2008 18:03:39 -  1.7
+++ pymol-py.patch  31 Dec 2008 01:35:41 -  1.8
@@ -95,7 +95,7 @@
  export PYTHONPATH
  #
 -exec /sw/bin/python $PYMOL_PATH/modules/pymol/__init__.py $@
-+exec @FINKPREFIX@/bin/python2.X $PYMOL_PATH/modules/pymol/__init__.py $@
++exec @FINKPREFIX@/bin/python2.X $PYMOL_PATH/modules/pymol/__init__.py -d _ 
set stereo_double_pump_mono,quiet=1 $@
  
  
 


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[cvs] dists/10.4/unstable/main/finkinfo/sci pymol-py.info,1.20,1.21

2008-12-30 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv25443

Modified Files:
pymol-py.info 
Log Message:
limit graphic artifacts in xorg 2.3.2

Index: pymol-py.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/pymol-py.info,v
retrieving revision 1.20
retrieving revision 1.21
diff -u -d -r1.20 -r1.21
--- pymol-py.info   17 Aug 2008 04:43:27 -  1.20
+++ pymol-py.info   31 Dec 2008 01:36:21 -  1.21
@@ -1,21 +1,23 @@
 Info2: 
 Package: pymol-py%type_pkg[python]
 Version: 1.1r2
-Revision: 1000
+Revision: 1001
 Distribution: (%type_pkg[python] = 23) 10.3, (%type_pkg[python] = 23) 10.4
 Maintainer: Jack Howarth howa...@nitro.med.uc.edu
 Type: python (2.3 2.4 2.5)
 #Source: mirror:sourceforge:fink/pymol-%v-src.tgz
 Source: http://diablo.ucsc.edu/~wgscott/pymol/pymol-%v-src.tgz
 Source-MD5: 1ffa3e276360694012ce6e2029f6ea91
+PatchFile: pymol-py.patch
+PatchFile-MD5: 8e290e2aaf27d3203795adf0a4621916
 SourceDirectory: pymol-1.1
 # Source2: http://www.weizmann.ac.il/ISPC/eMovie.py
 # Source2-MD5: 0d2236e26f00d944223f6c17049c2b97
 Depends: python%type_pkg[python], libpng3-shlibs, numeric-py%type_pkg[python], 
tcltk, pmw-py%type_pkg[python] (= 1.2-1), freeglut-shlibs, blt-shlibs
-BuildDepends: libpng3, freeglut, db43-ssl (= 4.3.29-1001)|db43 (= 
4.3.29-1001), readline (= 4.3-1028), gdbm3, expat, tcltk-dev, blt, x11-dev
+BuildDepends: libpng3, freeglut, db43-ssl (= 4.3.29-1001)|db43 (= 
4.3.29-1001), readline (= 4.3-1028), gdbm3, expat, tcltk-dev, blt, x11-dev, 
fink (= 0.24.12)
 Conflicts: pymol, pymol-py22, pymol-py23, pymol-py24, pymol-py25
 Replaces: pymol, pymol-py22, pymol-py23, pymol-py24, pymol-py25
-PatchScript: sed 's|@FINKPREFIX@|%p|g' %a/pymol-py.patch | sed 
's|python2.X|python%type_raw[python]|g' | sed 
's|pymol-py2X|pymol-py%type_pkg[python]|g' | patch -p1
+PatchScript: sed 's|@FINKPREFIX@|%p|g'  %{PatchFile} | sed 
's|python2.X|python%type_raw[python]|g' | sed 
's|pymol-py2X|pymol-py%type_pkg[python]|g' | patch -p1
 CompileScript: 
 (cd setup; cp Rules.osx-fink %b/Rules.delsci)
 make -f Makefile.delsci
@@ -59,6 +61,9 @@
 Added eMovie.py plug-in manually.  Commented out line that opens the window 
for eMovie by
 default every time pymol is started as this is annoying behavior. eMovie is 
activated via 
 the plugin menu.
+Added  -d _ set stereo_double_pump_mono,quiet=1 to exec on pymol to limit 
video
+artifacts on drivers that don't properly support hardware stereo yet such as 
those for the
+HD 2600 XT.
 
 DescUsage: Just type 'pymol' at the command prompt inside an X environment.
 License: OSI-Approved


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[cvs] dists/10.4/unstable/main/finkinfo/x11 mesa-libglw.info,1.4,1.5

2009-01-01 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv5681

Modified Files:
mesa-libglw.info 
Log Message:
update to Mesa 7.2 sources

Index: mesa-libglw.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11/mesa-libglw.info,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -d -r1.4 -r1.5
--- mesa-libglw.info2 Jul 2008 00:30:43 -   1.4
+++ mesa-libglw.info1 Jan 2009 16:20:11 -   1.5
@@ -1,18 +1,21 @@
 Info2: 
 Package: mesa-libglw-%type_pkg[motif]
-Version: 7.0.2
-Revision: 3
+Version: 7.2
+Revision: 1
+BuildDependsOnly: True
 Type: motif (lesstif openmotif3 openmotif4)
 Source: http://dl.sourceforge.net/sourceforge/mesa3d/MesaLib-%v.tar.bz2
-Source-MD5: 93e6ed7924ff069a4f883b4fce5349dc
+Source-MD5: 04d379292e023df0b0266825cb0dbde5
+PatchFile: mesa-libglw.patch
+PatchFile-MD5: e585f9311d0da559c29e5424d6c66242
 SourceDirectory: Mesa-%v
 Depends: x11, %N-shlibs (= %v-%r), %type_pkg[motif]-shlibs
-BuildDepends: %type_pkg[motif], x11-dev
+BuildDepends: %type_pkg[motif], x11-dev, fink (= 0.24.12)
 BuildConflicts: (%type_pkg[motif] != lesstif) lesstif, (%type_pkg[motif] != 
openmotif3) openmotif3, (%type_pkg[motif] != openmotif4) openmotif4
 Conflicts: mesa-libglw, mesa-libglw-lesstif, mesa-libglw-openmotif3, 
mesa-libglw-openmotif4
 Replaces: mesa-libglw, mesa-libglw-lesstif, mesa-libglw-openmotif3, 
mesa-libglw-openmotif4
 PatchScript: 
-sed 's|@FINKPREFIX@|%p|g' %a/mesa-libglw.patch | sed 
's|@MOTIF@|%type_pkg[motif]|g'| patch -p1
+sed 's|@FINKPREFIX@|%p|g'  %{PatchFile} | sed 's|@MOTIF@|%type_pkg[motif]|g'| 
patch -p1
 
 CompileScript: 
  #!/bin/sh -ev
@@ -20,14 +23,14 @@
 
 InstallScript: 
  #!/bin/sh -ev
- make install INSTALL_DIR=%d  LIB_DIR=lib
+ make install DESTDIR=%d  LIB_DIR=lib
  cd %d/%p/lib
- ln -s libGLw-%type_pkg[motif].1.dylib libGLw.dylib
+ ln -s libGLw-%type_pkg[motif].1.0.dylib libGLw.dylib
 
 SplitOff: 
   Package: %N-shlibs
   Depends: x11, %type_pkg[motif]-shlibs
-  Files: %p/lib/libGLw-%type_pkg[motif].1.dylib
+  Files: %p/lib/libGLw-%type_pkg[motif].*.dylib 
   Shlibs: 
 %p/lib/libGLw-%type_pkg[motif].1.dylib 1.0.0 %n (=7.0.2-3)
   


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[cvs] dists/10.4/unstable/main/finkinfo/x11 mesa-libglw.patch, 1.3, 1.4

2009-01-01 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv5707

Modified Files:
mesa-libglw.patch 
Log Message:
update to Mesa 7.2 sources

Index: mesa-libglw.patch
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11/mesa-libglw.patch,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- mesa-libglw.patch   2 Jul 2008 00:31:11 -   1.3
+++ mesa-libglw.patch   1 Jan 2009 16:20:34 -   1.4
@@ -1,19 +1,28 @@
 Mesa-7.0.2.orig/configs/darwin 2007-11-01 15:09:01.0 -0400
-+++ Mesa-7.0.2/configs/darwin  2008-04-27 11:52:43.0 -0400
-@@ -7,6 +7,12 @@
- # Compiler and flags
- CC = cc
- CXX = cc
-+
-+COPY_LIBS = cp -f
-+
-+MKDEP = gcc -M -MG
-+MKDEP_OPTIONS = -MF depend
-+
- CFLAGS = -I/usr/X11R6/include -O3 -fPIC -fno-common -ffast-math 
-funroll-loops -fexpensive-optimizations -no-cpp-precomp -dynamic -Ddarwin
- CXXFLAGS = -I/usr/X11R6/include -O3 -fPIC -fno-common -ffast-math 
-funroll-loops -fexpensive-optimizations -no-cpp-precomp -dynamic -Ddarwin
+diff -uNr Mesa-7.2/bin/mklib Mesa-7.2.fink/bin/mklib
+--- Mesa-7.2/bin/mklib 2008-08-25 10:46:41.0 -0400
 Mesa-7.2.fink/bin/mklib2009-01-01 10:12:42.0 -0500
+@@ -638,7 +638,7 @@
+ else
+ LIBSUFFIX=dylib
+ if [ -z $ID ] ; then
+-ID=lib${LIBNAME}.${MAJOR}.${LIBSUFFIX}
++
ID=@FINKPREFIX@/lib/liblib${LIBNAME}.${MAJOR}.${MINOR}.${LIBSUFFIX}
+ fi
+ OPTS=${ARCHOPT} -dynamiclib -multiply_defined suppress 
-current_version ${MAJOR}.${MINOR}.0 -compatibility_version ${MAJOR}.${MINOR}.0 
-install_name ${ID}
+ fi
+diff -uNr Mesa-7.2/configs/darwin Mesa-7.2.fink/configs/darwin
+--- Mesa-7.2/configs/darwin2008-08-25 10:46:41.0 -0400
 Mesa-7.2.fink/configs/darwin   2009-01-01 11:12:05.0 -0500
+@@ -4,7 +4,7 @@
  
-@@ -18,16 +24,13 @@
+ CONFIG_NAME = darwin
+ 
+-INSTALL_DIR = /usr/X11
++INSTALL_DIR = @FINKPREFIX@
+ 
+ # Compiler and flags
+ CC = gcc
+@@ -29,7 +29,7 @@
  GL_LIB_NAME = libGL.dylib
  GLU_LIB_NAME = libGLU.dylib
  GLUT_LIB_NAME = libglut.dylib
@@ -21,61 +30,24 @@
 +GLW_LIB_NAME = libg...@motif@.dylib
  OSMESA_LIB_NAME = libOSMesa.dylib
  
- GL_LIB_DEPS = -L/usr/X11R6/lib -lX11 -lXext -lm -lpthread
- OSMESA_LIB_DEPS = -L$(TOP)/$(LIB_DIR) -lGL
- GLU_LIB_DEPS = -L$(TOP)/$(LIB_DIR) -lGL
- GLUT_LIB_DEPS = -L$(TOP)/$(LIB_DIR) -lGL -lGLU -L/usr/X11R6/lib -lX11 -lXmu 
-lXi -lXext
--GLW_LIB_DEPS = -L/usr/X11R6/lib -lX11 -lXt $(TOP)/lib/GL.dylib
-+GLW_LIB_DEPS = -L/usr/X11R6/lib -lX11 -lXt -l$(GL_LIB) 
/System/Library/Frameworks/OpenGL.framework/Libraries/libGL.dylib 
-...@finkprefix@/lib -lXm
- APP_LIB_DEPS = -L$(TOP)/lib -l$(GLUT_LIB) -l$(GLU_LIB) -l$(GL_LIB) 
-L/usr/X11R6/lib -lX11 -lXmu -lXt -lXi -lm
+ # globs used to install the lib and all symlinks
+@@ -43,11 +43,9 @@
+ OSMESA_LIB_DEPS = -L$(TOP)/$(LIB_DIR) -l$(GL_LIB)
+ GLU_LIB_DEPS = -L$(TOP)/$(LIB_DIR) -l$(GL_LIB)
+ GLUT_LIB_DEPS = -L$(TOP)/$(LIB_DIR) -l$(GLU_LIB) -l$(GL_LIB)  
-L$(INSTALL_DIR)/$(LIB_DIR) -lX11 -lXmu -lXi -lXext
+-GLW_LIB_DEPS = -L$(TOP)/$(LIB_DIR) -l$(GL_LIB) -L$(INSTALL_DIR)/$(LIB_DIR) 
-lX11 -lXt
++GLW_LIB_DEPS = -L$(TOP)/$(LIB_DIR) -L/usr/X11R6/lib -l$(GL_LIB) 
/System/Library/Frameworks/OpenGL.framework/Libraries/libGL.dylib 
-L$(INSTALL_DIR)/$(LIB_DIR) -lX11 -lXt -L/@FINKPREFIX@/lib -lXm
+ APP_LIB_DEPS = -L$(TOP)/lib -l$(GLUT_LIB) -l$(GLU_LIB) -l$(GL_LIB) 
-L$(INSTALL_DIR)/$(LIB_DIR) -lX11 -lXmu -lXt -lXi -lm
  
 -# omit glw lib for now:
--SRC_DIRS = mesa glu glut/glx
--
 Mesa-6.5.1/bin/mklib.org   2008-02-27 00:02:50.0 -0500
-+++ Mesa-6.5.1/bin/mklib   2008-02-27 00:06:25.0 -0500
-@@ -584,7 +584,7 @@
- OPTS=${ARCHOPT} -bundle -multiply_defined suppress
- else
-   LIBSUFFIX=dylib
--OPTS=${ARCHOPT} -dynamiclib -multiply_defined suppress 
-current_version ${MAJOR}.${MINOR}.0 -compatibility_version ${MAJOR}.${MINOR}.0 
-install_name lib${LIBNAME}.${MAJOR}.${LIBSUFFIX}
-+OPTS=${ARCHOPT} -dynamiclib -multiply_defined suppress 
-current_version ${MAJOR}.${MINOR}.0 -compatibility_version ${MAJOR}.${MINOR}.0 
-install_name @FINKPREFIX@/lib/lib${LIBNAME}.${MAJOR}.${LIBSUFFIX}
- fi
- LINKNAME=lib${LIBNAME}.${LIBSUFFIX}
- LIBNAME=lib${LIBNAME}.${MAJOR}.${LIBSUFFIX}
 Mesa-7.0.2/src/glw/Makefile.orig   2007-09-28 20:43:28.0 -0400
-+++ Mesa-7.0.2/src/glw/Makefile2008-02-27 15:13:25.0 -0500
-@@ -7,7 +7,7 @@
- MINOR = 0
- TINY = 0
- 
--INCDIRS = -I$(TOP)/include -I/usr/include/Motif1.2 $(X11_INCLUDES)
-+INCDIRS = -I$(TOP)/include -...@finkprefix@/include $(X11_INCLUDES)
- 
- 
- OBJECTS = $(GLW_SOURCES:.c=.o)
-@@ -33,13 +33,11 @@
- glw.pc: glw.pc.in
-   $(pcedit) $  $@
- 

[cvs] dists/10.4/unstable/main/finkinfo/devel openmpi.info,1.10,1.11

2009-01-20 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/devel
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv32170

Modified Files:
openmpi.info 
Log Message:
update to openmpi 1.3

Index: openmpi.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/devel/openmpi.info,v
retrieving revision 1.10
retrieving revision 1.11
diff -u -d -r1.10 -r1.11
--- openmpi.info23 Oct 2008 17:02:39 -  1.10
+++ openmpi.info21 Jan 2009 04:31:19 -  1.11
@@ -1,5 +1,5 @@
 Package: openmpi
-Version: 1.2.8
+Version: 1.3
 Revision: 1000
 GCC: 4.0
 Description: MPI implementation for parallel computing
@@ -9,8 +9,8 @@
 BuildDepends: gcc43
 BuildConflicts: lammpi ( 7.1.2-1000), lammpi-shlibs ( 7.1.2-1000), 
lammpi-dev
 Conflicts: lammpi ( 7.1.2-1000), lammpi-shlibs ( 7.1.2-1000), lammpi-dev  
( 7.1.2-1000)
-Source: http://www.open-mpi.org/software/ompi/v1.2/downloads/openmpi-%v.tar.bz2
-Source-MD5: 7f2d5af02101c5f01173f4f6de296549
+Source: http://www.open-mpi.org/software/ompi/v%v/downloads/openmpi-%v.tar.bz2
+Source-MD5: efbba7d652d1e430d456f65d7a2e339b
 ConfigureParams: --prefix=%p --libexecdir=%p/lib/%n --datadir=%p/share/doc/%n 
--sysconfdir=%p/etc/%n --sharedstatedir=%p/var/%n/shared 
--localstatedir=%p/var/%n/local --libdir=%p/lib/%n --includedir=%p/include 
--infodir=%p/share/info --mandir=%p/share/man/%n --enable-shared 
--enable-static --disable-dependency-tracking FFLAGS=-O3 --with-devel-headers
 InstallScript: 
 #!/bin/sh -ev


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[cvs] dists/10.4/unstable/main/finkinfo/languages gcc43.info,1.7,1.8

2009-01-24 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv9470

Modified Files:
gcc43.info 
Log Message:
update to gcc 4.3.3

Index: gcc43.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages/gcc43.info,v
retrieving revision 1.7
retrieving revision 1.8
diff -u -d -r1.7 -r1.8
--- gcc43.info  12 Jan 2009 04:51:21 -  1.7
+++ gcc43.info  24 Jan 2009 17:36:35 -  1.8
@@ -1,33 +1,34 @@
 Info2: 
 Package: gcc43
-Version: 4.3.2
+Version: 4.3.3
 Revision: 1000
 Source: ftp://gcc.gnu.org/pub/gcc/releases/gcc-%v/gcc-%v.tar.bz2
-Source-MD5: 5dfac5da961ecd5f227c3175859a486d
+Source-MD5: cc3c5565fdb9ab87a05ddb106ba0bd1f
 Source2: ftp://sourceware.org/pub/java/ecj-latest.jar
 Source2-MD5: fd299f26c02268878b5d6c0e86f57c43
+PatchFile: %n.patch
+PatchFile-MD5: d2670aa8d5fe01e4eb8b3fc541120502
 Type: -64bit
 NoSetCPPFLAGS: True
 NoSetLDFLAGS: True
 Conflicts: gcc4, gcc42, gcc44
 Replaces: gcc4, gcc42, gcc44
-Depends: gmp-shlibs (= 4.2.3-1000), libmpfr1-shlibs (= 2.3.1-1), %N-shlibs 
(= %v-%r), libiconv, libgettext3-shlibs, xcode (= 2.5)
-BuildDepends: gmp (= 4.2.3-1000), libmpfr1 (= 2.3.1-1), libiconv-dev, 
gettext-tools, libgettext3-dev, xcode (= 2.5), fink (= 0.24.12-1)
+Depends: gmp-shlibs (= 4.2.3-1000), libmpfr1-shlibs (= 2.3.2-1), %N-shlibs 
(= %v-%r), libiconv, libgettext3-shlibs, xcode (= 2.5)
+BuildDepends: gmp (= 4.2.3-1000), libmpfr1 (= 2.3.2-1), libiconv-dev, 
gettext-tools, libgettext3-dev, xcode (= 2.5), fink (= 0.24.12)
 ConfigureParams: 
  --prefix=%p/lib/gcc4.3 --mandir=%p/share/man --infodir=%p/share/info 
--enable-languages=c,c++,fortran,objc,java \
  `cc -v 21|grep '^Configured'|tr ' ' '\n'|egrep 
'^\-\-(with\-(arch|tune)|host)='|sed 
's|--with-arch=apple|--with-arch=nocona|g'|sed 's|--host|--build|g'|xargs` \
  --with-gmp=%p --with-libiconv-prefix=%p --with-system-zlib 
--x-includes=/usr/X11R6/include --x-libraries=/usr/X11R6/lib 
--disable-libjava-multilib
 
-PatchFile: %n.patch
-PatchFile-MD5: d2670aa8d5fe01e4eb8b3fc541120502
 CompileScript: 
- #!/bin/sh -ev
+ #!/bin/bash -ev
  ulimit -s `ulimit -s`
  mv ../ecj-latest.jar ecj.jar
  mkdir ../darwin_objdir
  cd ../darwin_objdir
  ../gcc-%v/configure %c
- make
+ num_cpu=$(echo `sysctl -n hw.ncpu`)
+ make -j $num_cpu
  ##  make check requires autogen, dejagnu and expect, and should be run, in 
darwin_objdir, after install.
  ##  on 32-bit processors use
  # make -k check
@@ -101,7 +102,7 @@
 %p/lib/gcc4.3/lib/libssp.0.dylib 1.0.0 %n (= 4.1-1) 32
 %p/lib/gcc4.3/lib/libobjc-gnu.2.dylib 3.0.0 %n (= 20050130-5) 32
 %p/lib/gcc4.3/lib/libgomp.1.dylib 2.0.0 %n (= 2:4.1.99-20060513) 32
-%p/lib/gcc4.3/lib/gcj-4.3.2-9/libjvm.dylib 0.0.0 %n (= 4.1-1) 32
+%p/lib/gcc4.3/lib/gcj-4.3.3-9/libjvm.dylib 0.0.0 %n (= 4.1-1) 32
 %p/lib/gcc4.3/%lib/libgfortran.3.dylib 4.0.0 %n (= 4.3-20070711) 64
 %p/lib/gcc4.3/%lib/libffi.4.dylib 5.0.0 %n (= 20050130-5) 64
 %p/lib/gcc4.3/%lib/libstdc++.6.dylib 7.0.0 %n (= 4.1-1) 64


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[cvs] dists/10.4/unstable/main/finkinfo/sci gromacs.info,1.9,1.10

2009-01-28 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv30161

Modified Files:
gromacs.info 
Log Message:
update to 4.0.3

Index: gromacs.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/gromacs.info,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -d -r1.9 -r1.10
--- gromacs.info21 Nov 2008 12:36:06 -  1.9
+++ gromacs.info28 Jan 2009 14:20:30 -  1.10
@@ -1,5 +1,5 @@
 Package: gromacs
-Version: 4.0.2
+Version: 4.0.3
 Revision: 1000
 Depends: %N-shlibs (= %v-%r), fftw3-shlibs, x11, openmotif3-shlibs
 BuildDepends: fftw3, x11-dev
@@ -9,7 +9,7 @@
 CustomMirror: 
 Primary: ftp://ftp.gromacs.org/pub/gromacs/
 
-Source-MD5: 7a9eedf9ef365d32cd01355b8950ddc5
+Source-MD5: 2902403671a0f9b0934ddf3ca586b7ec
 ConfigureParams: --enable-shared --prefix=%p --exec-prefix=%p --mandir=%p/share
 DocFiles: AUTHORS COPYING README
 PatchScript: 


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[cvs] dists/10.4/unstable/main/finkinfo/sci gromacs-mpi.info, 1.10, 1.11

2009-01-28 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv30210

Modified Files:
gromacs-mpi.info 
Log Message:
update to 4.0.3

Index: gromacs-mpi.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/gromacs-mpi.info,v
retrieving revision 1.10
retrieving revision 1.11
diff -u -d -r1.10 -r1.11
--- gromacs-mpi.info21 Nov 2008 12:36:45 -  1.10
+++ gromacs-mpi.info28 Jan 2009 14:20:54 -  1.11
@@ -1,6 +1,6 @@
 Info2: 
 Package: gromacs-mpi-%type_pkg[handler]
-Version: 4.0.2
+Version: 4.0.3
 Revision: 1000
 Type: handler (lammpi openmpi)
 Depends: gromacs (= %v), %N-shlibs (= %v-%r), fftw3-shlibs, x11, 
openmotif3-shlibs, (%type_pkg[handler] = lammpi) lammpi (= 7.1.2-1000), 
(%type_pkg[handler] = openmpi) openmpi 
@@ -13,7 +13,7 @@
 CustomMirror: 
  Primary: ftp://ftp.gromacs.org/pub/gromacs/
 
-Source-MD5: 7a9eedf9ef365d32cd01355b8950ddc5
+Source-MD5: 2902403671a0f9b0934ddf3ca586b7ec
 ConfigureParams: --enable-shared --prefix=%p --exec-prefix=%p 
--mandir=%p/share  --enable-mpi --program-suffix=_mpi
 DocFiles: AUTHORS COPYING README
 SetCPPFLAGS: -I%p/include/%type_raw[handler]


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[cvs] dists/10.4/unstable/main/finkinfo/sci gromacs.info,1.10,1.11

2009-02-19 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv31046

Modified Files:
gromacs.info 
Log Message:
update to 4.0.4

Index: gromacs.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/gromacs.info,v
retrieving revision 1.10
retrieving revision 1.11
diff -u -d -r1.10 -r1.11
--- gromacs.info28 Jan 2009 14:20:30 -  1.10
+++ gromacs.info20 Feb 2009 03:05:39 -  1.11
@@ -1,5 +1,5 @@
 Package: gromacs
-Version: 4.0.3
+Version: 4.0.4
 Revision: 1000
 Depends: %N-shlibs (= %v-%r), fftw3-shlibs, x11, openmotif3-shlibs
 BuildDepends: fftw3, x11-dev
@@ -9,7 +9,7 @@
 CustomMirror: 
 Primary: ftp://ftp.gromacs.org/pub/gromacs/
 
-Source-MD5: 2902403671a0f9b0934ddf3ca586b7ec
+Source-MD5: 5ae66b152c634ccfde2c57c81266d1fd
 ConfigureParams: --enable-shared --prefix=%p --exec-prefix=%p --mandir=%p/share
 DocFiles: AUTHORS COPYING README
 PatchScript: 


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[cvs] dists/10.4/unstable/main/finkinfo/sci gromacs-mpi.info, 1.11, 1.12

2009-02-19 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv31224

Modified Files:
gromacs-mpi.info 
Log Message:
update to 4.0.4

Index: gromacs-mpi.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/gromacs-mpi.info,v
retrieving revision 1.11
retrieving revision 1.12
diff -u -d -r1.11 -r1.12
--- gromacs-mpi.info28 Jan 2009 14:20:54 -  1.11
+++ gromacs-mpi.info20 Feb 2009 03:06:06 -  1.12
@@ -1,6 +1,6 @@
 Info2: 
 Package: gromacs-mpi-%type_pkg[handler]
-Version: 4.0.3
+Version: 4.0.4
 Revision: 1000
 Type: handler (lammpi openmpi)
 Depends: gromacs (= %v), %N-shlibs (= %v-%r), fftw3-shlibs, x11, 
openmotif3-shlibs, (%type_pkg[handler] = lammpi) lammpi (= 7.1.2-1000), 
(%type_pkg[handler] = openmpi) openmpi 
@@ -13,7 +13,7 @@
 CustomMirror: 
  Primary: ftp://ftp.gromacs.org/pub/gromacs/
 
-Source-MD5: 2902403671a0f9b0934ddf3ca586b7ec
+Source-MD5: 5ae66b152c634ccfde2c57c81266d1fd
 ConfigureParams: --enable-shared --prefix=%p --exec-prefix=%p 
--mandir=%p/share  --enable-mpi --program-suffix=_mpi
 DocFiles: AUTHORS COPYING README
 SetCPPFLAGS: -I%p/include/%type_raw[handler]


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[cvs] dists/10.4/unstable/main/finkinfo/sci pymol-py.info,1.21,1.22

2009-03-08 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv10530

Modified Files:
pymol-py.info 
Log Message:
update for 10.6

Index: pymol-py.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/pymol-py.info,v
retrieving revision 1.21
retrieving revision 1.22
diff -u -d -r1.21 -r1.22
--- pymol-py.info   31 Dec 2008 01:36:21 -  1.21
+++ pymol-py.info   8 Mar 2009 20:39:57 -   1.22
@@ -9,7 +9,7 @@
 Source: http://diablo.ucsc.edu/~wgscott/pymol/pymol-%v-src.tgz
 Source-MD5: 1ffa3e276360694012ce6e2029f6ea91
 PatchFile: pymol-py.patch
-PatchFile-MD5: 8e290e2aaf27d3203795adf0a4621916
+PatchFile-MD5: f0a874382d1670e27beae91b52e5d4d0
 SourceDirectory: pymol-1.1
 # Source2: http://www.weizmann.ac.il/ISPC/eMovie.py
 # Source2-MD5: 0d2236e26f00d944223f6c17049c2b97
@@ -19,7 +19,11 @@
 Replaces: pymol, pymol-py22, pymol-py23, pymol-py24, pymol-py25
 PatchScript: sed 's|@FINKPREFIX@|%p|g'  %{PatchFile} | sed 
's|python2.X|python%type_raw[python]|g' | sed 
's|pymol-py2X|pymol-py%type_pkg[python]|g' | patch -p1
 CompileScript: 
+#! /bin/sh -ex
 (cd setup; cp Rules.osx-fink %b/Rules.delsci)
+case `uname -r` in
+10.*) perl -pi -e s,-Wno-long-double,, ./Rules.delsci ;;
+esac
 make -f Makefile.delsci
 
 InstallScript: 


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[cvs] dists/10.4/unstable/main/finkinfo/sci pymol-py.patch,1.8,1.9

2009-03-08 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv10641

Modified Files:
pymol-py.patch 
Log Message:
update for 10.6

Index: pymol-py.patch
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/pymol-py.patch,v
retrieving revision 1.8
retrieving revision 1.9
diff -u -d -r1.8 -r1.9
--- pymol-py.patch  31 Dec 2008 01:35:41 -  1.8
+++ pymol-py.patch  8 Mar 2009 20:40:24 -   1.9
@@ -99,3 +99,18 @@
  
  
 
+--- pymol-1.1/layer0/Feedback.h.org2009-02-22 17:31:55.0 -0500
 pymol-1.1/layer0/Feedback.h2009-02-22 17:33:25.0 -0500
+@@ -230,10 +230,10 @@
+  * variable arguments.
+ */
+ 
+-#define PRINTFB(G,sysmod,mask) { FeedbackLineType _FBstr; 
if(Feedback(G,sysmod,mask)) {sprintf( _FBstr,
++#define PRINTFB(G,sysmod,mask) { FeedbackLineType _FBstr; 
if(Feedback(G,sysmod,mask)) {(sprintf)( _FBstr,
+ #define ENDFB(G) );  FeedbackAdd(G,_FBstr);}}
+ 
+-#define PRINTF { FeedbackLineType _FBstr; sprintf( _FBstr,
++#define PRINTF { FeedbackLineType _FBstr; (sprintf)( _FBstr,
+ #define ENDF(G)  ); FeedbackAdd(G,_FBstr);}
+ 
+ /* debugging: goes to stderr */


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[cvs] dists/10.4/unstable/main/finkinfo/sci sparky-py.info,1.13,1.14

2009-03-08 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv11143

Modified Files:
sparky-py.info 
Log Message:
update for 10.6

Index: sparky-py.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/sparky-py.info,v
retrieving revision 1.13
retrieving revision 1.14
diff -u -d -r1.13 -r1.14
--- sparky-py.info  31 Jan 2009 23:58:16 -  1.13
+++ sparky-py.info  8 Mar 2009 20:43:21 -   1.14
@@ -15,8 +15,12 @@
 PatchFile: sparky-py.patch
 PatchFile-MD5: 48e99063a83823434093b6f73bb2be9b
 PatchScript: 
+#! /bin/sh -ex
 sed 's|@FINKPREFIX@|%p|g' %{PatchFile} | sed 's|@BUILDDIR@|%b|g' | sed 
's|@FINKDESTDIR@|%d|g' | sed 's|2.X|%type_raw[python]|g' |sed 
's|sparky-py2X|sparky-py%type_pkg[python]|g' | patch -p1
 perl -ni -e 'print unless /LIBRARY_PATH/' bin/sparky
+case `uname -r` in
+10.*) perl -pi -e s,-Wno-long-double,, ./c++/Makefile ;;
+esac
 
 CompileScript: 
 make


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[cvs] dists/10.4/unstable/main/finkinfo/sci whatcheck.info,1.6,1.7

2009-03-08 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv17048

Modified Files:
whatcheck.info 
Log Message:
correct for updated tarball upstream

Index: whatcheck.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/whatcheck.info,v
retrieving revision 1.6
retrieving revision 1.7
diff -u -d -r1.6 -r1.7
--- whatcheck.info  31 Jan 2009 23:58:16 -  1.6
+++ whatcheck.info  8 Mar 2009 21:10:22 -   1.7
@@ -6,12 +6,12 @@
 Depends: gcc43-shlibs
 Maintainer: Jack Howarth howa...@bromo.med.uc.edu
 Source: http://swift.cmbi.ru.nl/gv/whatcheck/whatcheck.tar.bz2
-Source-MD5: eca2c3544308af5c25c2129b2c819a94
+Source-MD5: cb97ed2f5b3bbededa29c06cac8564d1
 Source2: ftp://ftp.cmbi.kun.nl/pub/molbio/software/dsspcmbi.zip
 Source2-MD5: 718779c6c5469429994a2ca284777050
 SourceDirectory: whatcheck
 PatchFile: %n.patch
-PatchFile-MD5: faa461e2ee38571379f01eed311692dd
+PatchFile-MD5: 6bf5a7b4bbd631e9dc980b5acd64a0f4
 PatchScript: 
 #!/bin/bash -ev
 rm -fr *.o scatter dbdata/fonts/.svn
@@ -26,6 +26,7 @@
 
 CompileScript: 
 #!/bin/sh -ev
+touch *
 make -f Makefile_whatcheck
 cd scatterdir
 export FC=gfortran


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[cvs] dists/10.4/unstable/main/finkinfo/sci whatcheck.patch,1.2,1.3

2009-03-08 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv17208

Modified Files:
whatcheck.patch 
Log Message:
correct for updated tarball upstream

Index: whatcheck.patch
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/whatcheck.patch,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -d -r1.2 -r1.3
--- whatcheck.patch 12 Apr 2008 17:03:11 -  1.2
+++ whatcheck.patch 8 Mar 2009 21:10:52 -   1.3
@@ -69,7 +69,7 @@
#include /usr/include/unistd.h 
  #else 
#include unistd.h 
--  #include malloc.h 
+-/*  #include malloc.h */
 +  #include sys/malloc.h 
  #endif 
  #include stdio.h 
@@ -96,3 +96,524 @@
  umask 001
  stty intr '^C'  /dev/null
  [ -f WHATIF.FIG -a ! $DIR = `pwd` ]  /bin/rm WHATIF.FIG
+diff -uNr whatcheck/coot.F whatcheck.fink/coot.F
+--- whatcheck/coot.F   2008-08-07 10:07:48.0 -0400
 whatcheck.fink/coot.F  2009-01-01 13:39:40.0 -0500
+@@ -387,7 +387,6 @@
+   REAL  TVAL
+   CHARACTER*1   LCHANAM, LALTATM, LINSRTC, MCHANAM, MALTATM, MINSRTC
+   CHARACTER*4   CHAR4, CHAR5, LONESA3, T4, LNUMNAM, MONESA3, MNUMNAM
+-  CHARACTER*(*) QUAL
+ 
+ 
+ 
+diff -uNr whatcheck/supertab.sty whatcheck.fink/supertab.sty
+--- whatcheck/supertab.sty 1969-12-31 19:00:00.0 -0500
 whatcheck.fink/supertab.sty2009-01-01 13:56:45.0 -0500
+@@ -0,0 +1,506 @@
++% @stylefile{Super tabular
++% shortpackagename = {supertab},
++% longpackagename  = {supertabular},
++% baseformats  = {\LaTeX 2.09},
++% version  = {3.6h},
++% date = {1992-07-03},
++% author   = {Theo Jurriens,
++% t...@hgrrug5,
++% P.O Box 800,
++% 9700 AV Groningen},
++% abstract = {This file provides the supertabular environment, which
++% is an extension to the standard tabular environment.
++% Large tabulars are automatically split across pages.
++% Seperate commands for the table-head and table-tail
++% are provided, in order to repeat these on each page.}
++% infauthor= {Johannes Braams,
++% j.l.bra...@research.ptt.nl,
++% PTT Research,
++% P.O. Box 421,
++% 2260 AK Leidschendam}
++% infdate   = {1990-10-16}}
++%
++%
++%
++% supertabular sty
++% original idea:  Theo Jurriens 1988
++% t...@hgrrug5P.O Box 800, 9700 AV Groningen
++%
++% revised by: Johannes Braams
++% j.l.bra...@research.ptt.nl   PTT Research Leidschendam (NL)
++%
++% 10.07.92  - Still a problem in the combination of supertabular with 
array.sty
++% V 3.6h  I overlooked the fact that array doesn't use \...@tabulacr 
anymore
++% and it behaves differently with respect to \...@startparbox.
++% 03.07.92  - A problem in the combination of supertabular with array.sty
++% V 3.6g  It can be solved by removing the \string from \def\tableformat
++% and passing \tableformat expanded to \tabular.
++% 11.02.92  - Bug found by Michael Heissmeier when p{...} is used.
++% V 3.6f  A change in LaTeX.tex didn't find its way into supertabular.
++% 01.08.91  - Take height of tabletail into account when computing the
++% V 3.6e  maximum tableheight; add tolerance on first (partial) page
++% of the supertabular.
++% 27.06.91  - Cured bug that made the first part of the table one line
++% V 3.6d  shorter than the others. Appeared when supertabular was
++% used in a twocolumn environment.
++% 26.06.91  - Made \...@process@tablecaption a global macro. Previous caption
++% V 3.6c  turned up on a table without one.
++% 27.05.91  - Replaced \clearpage with \newpage to make supertabulars work
++% V 3.6b  in a twocolumn environment. This also prevents all floats
++% from being printed.
++% 15.02.91  - Because of the check for the use of tablefirsthead the
++% V 3.6a  combination of an \hline in the head and an \hline as the first
++% thing in the data went wrong. The \futurelet in the definition
++% of \hline found \fi instead of \hline, so no \doublerulesep
++% was added.
++% Also had to modify the way the environments were defined.
++% The blank space (from the CR after the argument of 
\supertabular)
++% has to be gobbled. This can only be done using a construction
++% like \def\command#1 {...}. So removed the use of \newenvironment
++% 04.02.91  - Added the commands \topcaption, \bottomcaption and \tablecaption
++% V 3.6   to include a caption within the supertabular environment. The
++% 

[cvs] dists/10.4/unstable/main/finkinfo/sci molmol.info,1.16,1.17

2009-03-08 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv578

Modified Files:
molmol.info 
Log Message:
update for 10.6

Index: molmol.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/molmol.info,v
retrieving revision 1.16
retrieving revision 1.17
diff -u -d -r1.16 -r1.17
--- molmol.info 31 Jan 2009 23:58:15 -  1.16
+++ molmol.info 9 Mar 2009 02:20:24 -   1.17
@@ -13,7 +13,7 @@
 Depends: x11, freeglut-shlibs, openmotif3-shlibs, libtiff-shlibs, 
libjpeg-shlibs, libpng3-shlibs, mesa-libglw-openmotif3-shlibs
 BuildDepends: freeglut, openmotif3, libtiff, libjpeg, libpng3, x11-dev, 
mesa-libglw-openmotif3, fink (= 0.24.12)
 PatchFile: %n.patch
-PatchFile-MD5: ac37b6b02cbe80896f7c6ebdcb666e4b
+PatchFile-MD5: 6f913dd7fd8e75e559e423745c5c9ecb
 PatchScript: 
 chmod -R +w *
 sed 's|@PREFIX@|%p|g' %{PatchFile} | patch -p1
@@ -35,11 +35,6 @@
 
 Homepage: http://www.mol.biol.ethz.ch/wuthrich/software/molmol/
 Description:  Molecular graphics display program
-DescPackaging: 
-Build molmol against a local copy of the original widgets-sgi
-sources for libGLw.a until Apple updates Leopard with a libGLw
-which is actually built with Motif support again.
-
 DescDetail: 
 MOLMOL is a molecular graphics program for displaying, analyzing, 
 and manipulating the three-dimensional structure of biological 


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[cvs] dists/10.4/unstable/main/finkinfo/sci molmol.patch,1.7,1.8

2009-03-08 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv654

Modified Files:
molmol.patch 
Log Message:
update for 10.6

Index: molmol.patch
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/molmol.patch,v
retrieving revision 1.7
retrieving revision 1.8
diff -u -d -r1.7 -r1.8
--- molmol.patch1 Mar 2008 23:16:36 -   1.7
+++ molmol.patch9 Mar 2009 02:20:52 -   1.8
@@ -31,7 +31,7 @@
 +
 +MCPPFLAGS =  -DMAXINT=INT_MAX -I/usr/X11R6/include -...@prefix@/include 
-bind_at_load -I$(TOP)
 +
-+CC = /usr/bin/gcc
++CC = gcc 
 +
 +MCFLAGS = -O -bind_at_load 
 +


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[cvs] dists/10.4/unstable/main/finkinfo/x11 freeglut.info,1.8,1.9

2009-03-25 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv7772

Modified Files:
freeglut.info 
Log Message:
build static lib with -fno-common

Index: freeglut.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11/freeglut.info,v
retrieving revision 1.8
retrieving revision 1.9
diff -u -d -r1.8 -r1.9
--- freeglut.info   27 Jan 2009 07:41:32 -  1.8
+++ freeglut.info   26 Mar 2009 00:54:14 -  1.9
@@ -1,6 +1,6 @@
 Package: freeglut
 Version: 2.4.0
-Revision: 4
+Revision: 5
 Maintainer: Jack Howarth howa...@bromo.med.uc.edu
 Source: mirror:sourceforge:freeglut/%N-%v.tar.gz
 Source-MD5: 6d16873bd876fbf4980a927cfbc496a1 
@@ -9,7 +9,7 @@
 Conflicts: glut, openglut
 Replaces: glut, openglut
 ConfigureParams: --disable-replace-glut --disable-warnings 
--disable-dependency-tracking --x-includes=/usr/X11R6/include 
--x-libraries=/usr/X11R6/lib
-SetCFLAGS: -O3
+SetCFLAGS: -O3 -fno-common
 SetLDFLAGS: 
-Wl,-dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
 PatchFile: %n.patch
 PatchFile-MD5: a94c1bc27fb509ac5fef3d5102d9e374


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[cvs] dists/10.4/unstable/main/finkinfo/x11 freeglut.info,1.9,1.10

2009-03-26 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv13616

Modified Files:
freeglut.info 
Log Message:
pass RANLIB instead

Index: freeglut.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11/freeglut.info,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -d -r1.9 -r1.10
--- freeglut.info   26 Mar 2009 00:54:14 -  1.9
+++ freeglut.info   26 Mar 2009 22:49:50 -  1.10
@@ -8,8 +8,8 @@
 BuildDepends: fink (= 0.24.12), x11-dev
 Conflicts: glut, openglut
 Replaces: glut, openglut
-ConfigureParams: --disable-replace-glut --disable-warnings 
--disable-dependency-tracking --x-includes=/usr/X11R6/include 
--x-libraries=/usr/X11R6/lib
-SetCFLAGS: -O3 -fno-common
+ConfigureParams: --disable-replace-glut --disable-warnings 
--disable-dependency-tracking --x-includes=/usr/X11R6/include 
--x-libraries=/usr/X11R6/lib RANLIB='ranlib -c'
+SetCFLAGS: -O3 
 SetLDFLAGS: 
-Wl,-dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
 PatchFile: %n.patch
 PatchFile-MD5: a94c1bc27fb509ac5fef3d5102d9e374


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[cvs] dists/10.4/unstable/main/finkinfo/x11 openmotif3.info,1.9,1.10

2009-03-26 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv16389

Modified Files:
openmotif3.info 
Log Message:
build static lib and use ranlib -c

Index: openmotif3.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11/openmotif3.info,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -d -r1.9 -r1.10
--- openmotif3.info 27 Jan 2009 07:41:32 -  1.9
+++ openmotif3.info 26 Mar 2009 23:13:40 -  1.10
@@ -1,6 +1,6 @@
 Package: openmotif3
 Version: 2.2.4
-Revision: 1
+Revision: 2
 Source: ftp://ftp.ics.com/openmotif/2.2/%v/openmotif-%v.tar.gz
 Source-MD5: b1cb4f8a482611e15c745d2682a28cfd
 PatchFile: %n.patch
@@ -20,7 +20,7 @@
 SetCFLAGS: -DXNO_MTSAFE_STRINGAPI -DXNO_MTSAFE_PWDAPI -DXNO_MTSAFE_TIMEAPI
 SetLIBS: -L/usr/X11R6/lib -lXt
 SetMAKEFLAGS: -j1
-ConfigureParams: --mandir=%p/share/man --x-includes=/usr/X11R6/include 
--x-libraries=/usr/X11R6/lib
+ConfigureParams: --mandir=%p/share/man --x-includes=/usr/X11R6/include 
--x-libraries=/usr/X11R6/lib --enable-static RANLIB='ranlib -c'
 CompileScript: 
   ./configure %c
   make


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[cvs] dists/10.4/unstable/main/finkinfo/x11 openmotif4.info,1.5,1.6

2009-03-26 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv16437

Modified Files:
openmotif4.info 
Log Message:
build static lib and use ranlib -c

Index: openmotif4.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11/openmotif4.info,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -d -r1.5 -r1.6
--- openmotif4.info 28 Dec 2008 22:25:54 -  1.5
+++ openmotif4.info 26 Mar 2009 23:14:03 -  1.6
@@ -1,6 +1,6 @@
 Package: openmotif4
 Version: 2.3.1
-Revision: 1
+Revision: 2
 Source: ftp://ftp.ics.com/openmotif/2.3/%v/openmotif-%v-1.tar.gz
 Source-MD5: 1372108f50f3554ee2f28367ff76bd32
 PatchFile: %n.patch
@@ -22,7 +22,7 @@
 SetCFLAGS: -I%p/include -DXNO_MTSAFE_STRINGAPI -DXNO_MTSAFE_PWDAPI 
-DXNO_MTSAFE_TIMEAPI
 SetLIBS: -L%p/lib -L/usr/X11R6/lib -lXt
 SetMAKEFLAGS: -j1
-ConfigureParams: --mandir=%p/share/man --enable-jpeg 
--with-libjpeg-includes=%p/include --with-libjpeg-lib=%p/lib -enable-png 
--with-libpng-includes=%p/include --with-libpng-lib=%p/lib --enable-xft 
--x-includes=/usr/X11R6/include --x-libraries=/usr/X11R6/lib
+ConfigureParams: --mandir=%p/share/man --enable-jpeg 
--with-libjpeg-includes=%p/include --with-libjpeg-lib=%p/lib -enable-png 
--with-libpng-includes=%p/include --with-libpng-lib=%p/lib --enable-xft 
--x-includes=/usr/X11R6/include --x-libraries=/usr/X11R6/lib --enable-static 
RANLIB='ranlib -c'
 CompileScript: 
   ./configure %c
   make


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[cvs] dists/10.4/unstable/main/finkinfo/devel ppl.info,NONE,1.1

2009-03-27 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/devel
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv29184

Added Files:
ppl.info 
Log Message:
add ppl package

--- NEW FILE: ppl.info ---
Package: ppl
Version: 0.10
Revision: 1
BuildDependsOnly: True
Depends: %N-shlibs (= %v-%r)
BuildDepends: gcc4.2
SetCC: gcc-4.2
SetCXX: g++-4.2
Source: ftp://ftp.cs.unipr.it/pub/%n/releases/%v/%n-%v.tar.bz2
Source-MD5: 8bf94f48375e2b13e4dbeaef327b2c3a
ConfigureParams: --prefix=%p --mandir=%p/share/man
SplitOff: 
  Package: %N-shlibs
  Files: 
%p/lib/libppl.7*.dylib
%p/lib/libppl_c.2*.dylib
%p/lib/libpwl.4*.dylib
%p/lib/ppl
  
  Shlibs: 
%p/lib/libppl.7.dylib 8.0.0 %n (= 0.10-1)
%p/lib/libppl_c.2.dylib 3.0.0 %n (= 0.10-1)
%p/lib/libpwl.4.dylib 5.0.0 %n (= 0.10-1)
  

License: GPL
Description: Parma Polyhedra Library
DescDetail: 
The Parma Polyhedra Library (PPL) is a C++ library for the 
manipulation of (not necessarily closed) convex polyhedra 
and other numerical abstractions. The applications of convex 
polyhedra include program analysis, optimized compilation, 
integer and combinatorial optimization and statistical 
data-editing. The Parma Polyhedra Library is user friendly 
(you write `x + 2*y + 5*z = 7' when you mean it), fully 
dynamic (available virtual memory is the only limitation 
to the dimension of anything), written in standard C++, 
exception-safe, rather efficient and thoroughly documented.

Homepage: http://www.cs.unipr.it/ppl
Maintainer: Jack Howarth howa...@bromo.med.uc.edu



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[cvs] dists/10.4/unstable/main/finkinfo/devel cloog.info,NONE,1.1

2009-03-27 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/devel
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv29294

Added Files:
cloog.info 
Log Message:
add cloog package

--- NEW FILE: cloog.info ---
Package: cloog
Version: 0.15
Revision: 1
BuildDepends: ppl (= 0.10-1)
BuildDependsOnly: True
Depends: %N-shlibs (= %v-%r), ppl-shlibs (= 0.10-1)
Source: ftp://gcc.gnu.org/pub/gcc/infrastructure/%N-ppl-%v.tar.gz
Source-MD5: 716b7a0823f96c9d02c1703a9c47d387
SourceDirectory: %n-ppl
Distribution: 10.5, 10.6
ConfigureParams: --prefix=%p --mandir=%p/share/man --with-ppl=%p
InstallScript: 
 make install DESTDIR=%d 
 rm -fr %i/share/info

SplitOff: 
  Package: %N-shlibs
  Files: 
%p/lib/libcloog.*.dylib 
  
  Shlibs: 
%p/lib/libcloog.0.dylib 1.0.0 %n (= 0.15.0-1)
  

License: GPL
Description: The Chunky Loop Generator
DescDetail: 
CLooG is a software which generates loops for scanning Z-polyhedra. 
That is, CLooG finds the code or pseudo-code where each integral 
point of one or more parametrized polyhedron or parametrized 
polyhedra union is reached. CLooG is designed to avoid control 
overhead and to produce a very efficient code.

DescPackaging: 
While the source tarball used for the cloog package
is named cloog-ppl, it will be the basis for the next
release of cloog.

Homepage: http://www.CLooG.org
Maintainer: Jack Howarth howa...@bromo.med.uc.edu



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[cvs] dists/10.4/unstable/main/finkinfo/languages gcc44.patch, NONE, 1.1

2009-03-27 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv30105

Added Files:
gcc44.patch 
Log Message:
add gcc44 package since gcc 4.4 is branched

--- NEW FILE: gcc44.patch ---
--- gcc/libjava/configure.ac.org2008-01-25 18:55:24.0 -0500
+++ gcc/libjava/configure.ac2008-01-25 18:56:16.0 -0500
@@ -82,6 +82,13 @@
[allow rebuilding of .class and .h files]))
 AM_CONDITIONAL(JAVA_MAINTAINER_MODE, test $enable_java_maintainer_mode = yes)
 
+AC_ARG_ENABLE(libjava-multilib,
+   AS_HELP_STRING([--enable-libjava-multilib], [build libjava as 
multilib]))
+if test $enable_libjava_multilib = no; then
+  multilib=no
+  ac_configure_args=$ac_configure_args --disable-multilib
+fi
+
 # It may not be safe to run linking tests in AC_PROG_CC/AC_PROG_CXX.
 GCC_NO_EXECUTABLES
 
--- gcc/libjava/configure.org   2008-01-25 18:56:41.0 -0500
+++ gcc/libjava/configure   2008-01-25 18:57:21.0 -0500
@@ -1018,6 +1018,8 @@
   --enable-gconf-peer compile GConf native peers for util.preferences
   --enable-java-maintainer-mode
   allow rebuilding of .class and .h files
+  --enable-libjava-multilib
+  build libjava as multilib
   --disable-dependency-tracking  speeds up one-time build
   --enable-dependency-tracking   do not reject slow dependency extractors
   --enable-maintainer-mode  enable make rules and dependencies not useful
@@ -1850,6 +1852,16 @@
 fi
 
 
+# Check whether --enable-libjava-multilib was given.
+if test ${enable_libjava_multilib+set} = set; then
+  enableval=$enable_libjava_multilib;
+fi
+
+if test $enable_libjava_multilib = no; then
+  multilib=no
+  ac_configure_args=$ac_configure_args --disable-multilib
+fi
+
 # It may not be safe to run linking tests in AC_PROG_CC/AC_PROG_CXX.
 
 
--- gcc-4.4-20090327/gcc/cp/Make-lang.in.org2009-03-27 20:58:00.0 
-0400
+++ gcc-4.4-20090327/gcc/cp/Make-lang.in2009-03-27 20:58:46.0 
-0400
@@ -73,7 +73,7 @@
 CXX_C_OBJS = attribs.o c-common.o c-format.o c-pragma.o c-semantics.o c-lex.o \
c-dump.o $(CXX_TARGET_OBJS) c-pretty-print.o c-opts.o c-pch.o \
incpath.o cppdefault.o c-ppoutput.o c-cppbuiltin.o prefix.o \
-   c-gimplify.o c-omp.o tree-inline.o
+   c-gimplify.o c-omp.o
 
 # Language-specific object files for C++ and Objective C++.
 CXX_AND_OBJCXX_OBJS = cp/call.o cp/decl.o cp/expr.o cp/pt.o cp/typeck2.o \
--- gcc-4.4-20090327/gcc/cp/Make-lang.in.orig   2009-03-27 21:04:25.0 
-0400
+++ gcc-4.4-20090327/gcc/cp/Make-lang.in2009-03-27 21:29:51.0 
-0400
@@ -72,7 +72,7 @@
 # Shared with C front end:
 CXX_C_OBJS = attribs.o c-common.o c-format.o c-pragma.o c-semantics.o c-lex.o \
c-dump.o $(CXX_TARGET_OBJS) c-pretty-print.o c-opts.o c-pch.o \
-   incpath.o cppdefault.o c-ppoutput.o c-cppbuiltin.o prefix.o \
+   incpath.o c-ppoutput.o c-cppbuiltin.o prefix.o \
c-gimplify.o c-omp.o
 
 # Language-specific object files for C++ and Objective C++.


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[cvs] dists/10.4/unstable/main/finkinfo/languages gcc44.info, NONE, 1.1

2009-03-27 Thread Jack Howarth
 (= 20050130-5) 32
%p/lib/gcc4.4/lib/libgomp.1.dylib 2.0.0 %n (= 2:4.1.99-20060513) 32
%p/lib/gcc4.4/lib/gcj-4.4.0-10/libjvm.dylib 0.0.0 %n (= 4.1-1) 32
%p/lib/gcc4.4/%lib/libgfortran.3.dylib 4.0.0 %n (= 4.3-20070711) 64
%p/lib/gcc4.4/%lib/libffi.4.dylib 5.0.0 %n (= 20050130-5) 64
%p/lib/gcc4.4/%lib/libstdc++.6.dylib 7.0.0 %n (= 4.1-1) 64
%p/lib/gcc4.4/%lib/libssp.0.dylib 1.0.0 %n (= 4.1-1) 64
%p/lib/gcc4.4/%lib/libobjc-gnu.2.dylib 3.0.0 %n (= 20050130-5) 64
%p/lib/gcc4.4/%lib/libgomp.1.dylib 2.0.0 %n (= 2:4.1.99-20060513) 64
  

License: GPL
Description: GNU Compiler Collection Version 4.3
InfoDocs: cpp-4.info cppinternals.info gcc-4.info gccinstall.info gccint.info 
gcj.info gfortran.info
DescDetail: 
 GCC, the GNU Compiler Collection, includes front ends for
 C, C++, Objective-C, Objective-C++, Fortran, Java, and Ada.
 .
 C, C++, Objective C and Fortran and Java are included in this package.
 .
 The C and C++ compilers are named gcc-4 and g++-4 to avoid
 conflicts with gcc and g++ installed by the Apple Developer Tools

DescPackaging: 
   The multilib builds of boehm-gc, libffi and libjava are disabled
since the 64-bit support is incomplete on Darwin for those libraries.
The use of odcctools has been removed and replaced with a BuildDepends
and Depends on the gcc version from Xcode 2.4.1.

Homepage: http://gcc.gnu.org/
Maintainer: Jack Howarth howa...@bromo.med.uc.edu



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[cvs] dists/10.4/unstable/main/finkinfo/x11 openmotif3.patch,1.3,1.4

2009-03-28 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv1471

Modified Files:
openmotif3.patch 
Log Message:
work around xcode linker bug

Index: openmotif3.patch
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11/openmotif3.patch,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- openmotif3.patch1 Jul 2008 22:32:32 -   1.3
+++ openmotif3.patch28 Mar 2009 17:49:19 -  1.4
@@ -32,3 +32,14 @@
  REVISION=0
  AGE=0
  
+--- openmotif-2.2.4/tools/wml/Makefile.in.org  2009-03-26 20:20:50.0 
-0400
 openmotif-2.2.4/tools/wml/Makefile.in  2009-03-26 20:21:27.0 
-0400
+@@ -204,7 +204,7 @@
+ 
+ libwml_a_AR = $(AR) cru
+ libwml_a_LIBADD =
+-am_libwml_a_OBJECTS = wmlparse.$(OBJEXT) wml.$(OBJEXT) \
++am_libwml_a_OBJECTS = wmlparse.$(OBJEXT) \
+   wmloutkey.$(OBJEXT) wmlouth.$(OBJEXT) wmloutmm.$(OBJEXT) \
+   wmloutp1.$(OBJEXT) wmlresolve.$(OBJEXT) wmlsynbld.$(OBJEXT) \
+   wmlutils.$(OBJEXT)


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[cvs] dists/10.4/unstable/main/finkinfo/x11 openmotif3.info, 1.10, 1.11

2009-03-28 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv1545

Modified Files:
openmotif3.info 
Log Message:
work around xcode linker bug

Index: openmotif3.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11/openmotif3.info,v
retrieving revision 1.10
retrieving revision 1.11
diff -u -d -r1.10 -r1.11
--- openmotif3.info 26 Mar 2009 23:13:40 -  1.10
+++ openmotif3.info 28 Mar 2009 17:49:44 -  1.11
@@ -1,10 +1,10 @@
 Package: openmotif3
 Version: 2.2.4
-Revision: 2
+Revision: 3
 Source: ftp://ftp.ics.com/openmotif/2.2/%v/openmotif-%v.tar.gz
 Source-MD5: b1cb4f8a482611e15c745d2682a28cfd
 PatchFile: %n.patch
-PatchFile-MD5: 081eb3b79b7517443c31d113fd218f95
+PatchFile-MD5: 1711f39da15c2dd4eb9273fb9046a5fa
 PatchScript: 
%{default_script} 
   perl -pi.bak -e 's,-flat_namespace -undefined suppress,-undefined 
dynamic_lookup,g' configure


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[cvs] dists/10.4/unstable/main/finkinfo/x11 openmotif4.info,1.6,1.7

2009-03-28 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv1642

Modified Files:
openmotif4.info 
Log Message:
work around xcode linker bug

Index: openmotif4.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11/openmotif4.info,v
retrieving revision 1.6
retrieving revision 1.7
diff -u -d -r1.6 -r1.7
--- openmotif4.info 26 Mar 2009 23:14:03 -  1.6
+++ openmotif4.info 28 Mar 2009 17:50:08 -  1.7
@@ -1,10 +1,10 @@
 Package: openmotif4
 Version: 2.3.1
-Revision: 2
+Revision: 3
 Source: ftp://ftp.ics.com/openmotif/2.3/%v/openmotif-%v-1.tar.gz
 Source-MD5: 1372108f50f3554ee2f28367ff76bd32
 PatchFile: %n.patch
-PatchFile-MD5: 75bcd0954ccdb5ba65740aca9c01f307
+PatchFile-MD5: 6bb1cf8d6afe8d37a82fd6c1c6710f8f
 PatchScript:  
   patch -p1  %{PatchFile}
   perl -pi.bak -e 's,-flat_namespace -undefined suppress,-undefined 
dynamic_lookup,g' configure


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[cvs] dists/10.4/unstable/main/finkinfo/x11 openmotif4.patch,1.3,1.4

2009-03-28 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv1685

Modified Files:
openmotif4.patch 
Log Message:
work around xcode linker bug

Index: openmotif4.patch
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11/openmotif4.patch,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- openmotif4.patch28 Dec 2008 22:26:22 -  1.3
+++ openmotif4.patch28 Mar 2009 17:50:32 -  1.4
@@ -254,3 +254,14 @@
  
  for ac_header in X11/Xmu/Editres.h
  do
+--- openmotif-2.3.1/tools/wml/Makefile.in.org  2009-03-26 20:36:34.0 
-0400
 openmotif-2.3.1/tools/wml/Makefile.in  2009-03-26 20:37:00.0 
-0400
+@@ -54,7 +54,7 @@
+ ARFLAGS = cru
+ libwml_a_AR = $(AR) $(ARFLAGS)
+ libwml_a_LIBADD =
+-am_libwml_a_OBJECTS = wmlparse.$(OBJEXT) wml.$(OBJEXT) \
++am_libwml_a_OBJECTS = wmlparse.$(OBJEXT) \
+   wmloutkey.$(OBJEXT) wmlouth.$(OBJEXT) wmloutmm.$(OBJEXT) \
+   wmloutp1.$(OBJEXT) wmlresolve.$(OBJEXT) wmlsynbld.$(OBJEXT) \
+   wmlutils.$(OBJEXT)


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[cvs] dists/10.4/unstable/main/finkinfo/languages gcc44-10.4.info, NONE, 1.1

2009-03-28 Thread Jack Howarth
/gcj-4.4.0-10/libjvm.dylib 0.0.0 %n (= 4.1-1) 32
%p/lib/gcc4.4/%lib/libgfortran.3.dylib 4.0.0 %n (= 4.3-20070711) 64
%p/lib/gcc4.4/%lib/libffi.4.dylib 5.0.0 %n (= 20050130-5) 64
%p/lib/gcc4.4/%lib/libstdc++.6.dylib 7.0.0 %n (= 4.1-1) 64
%p/lib/gcc4.4/%lib/libssp.0.dylib 1.0.0 %n (= 4.1-1) 64
%p/lib/gcc4.4/%lib/libobjc-gnu.2.dylib 3.0.0 %n (= 20050130-5) 64
%p/lib/gcc4.4/%lib/libgomp.1.dylib 2.0.0 %n (= 2:4.1.99-20060513) 64
  

License: GPL
Description: GNU Compiler Collection Version 4.3
InfoDocs: cpp-4.info cppinternals.info gcc-4.info gccinstall.info gccint.info 
gcj.info gfortran.info
DescDetail: 
 GCC, the GNU Compiler Collection, includes front ends for
 C, C++, Objective-C, Objective-C++, Fortran, Java, and Ada.
 .
 C, C++, Objective C and Fortran and Java are included in this package.
 .
 The C and C++ compilers are named gcc-4 and g++-4 to avoid
 conflicts with gcc and g++ installed by the Apple Developer Tools

DescPackaging: 
   The multilib builds of boehm-gc, libffi and libjava are disabled
since the 64-bit support is incomplete on Darwin for those libraries.
The use of odcctools has been removed and replaced with a BuildDepends
and Depends on the gcc version from Xcode 2.4.1.

Homepage: http://gcc.gnu.org/
Maintainer: Jack Howarth howa...@bromo.med.uc.edu



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[cvs] dists/10.4/unstable/main/finkinfo/languages llvm.info,NONE,1.1

2009-03-28 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv14940

Added Files:
llvm.info 
Log Message:
add llvm package

--- NEW FILE: llvm.info ---
Info2: 
Package: llvm
Version: 2.5
Revision: 1
Source: http://llvm.org/releases/%v/llvm-%v.tar.gz
Source-MD5: 55df2ea8665c8094ad2ef85187b9fc74
Type: -64bit
ConfigureParams: 
 --prefix=%p/lib/llvm --mandir=%p/share/man --infodir=%p/share/info 
--with-gmp=%p --with-libiconv-prefix=/usr --with-system-zlib 
--with-as=`xcode-select  -print-path`/usr/bin/as --with-ld=`xcode-select  
-print-path`/usr/bin/ld --with-nm=`xcode-select  -print-path`/usr/bin/nm

CompileScript: 
 #!/bin/bash -ev
 export LD=`xcode-select  -print-path`/usr/bin/ld
 ulimit -s `ulimit -s`
 darwinvers=`uname -r|cut -f1 -d.`
 mkdir ../llvm_objdir
 cd ../llvm_objdir
 if [ `uname -p` = powerpc ]; then
   TRIPLE=powerpc-apple-darwin$darwinvers
 else
   TRIPLE=i686-apple-darwin$darwinvers
 fi
 ../llvm-%v/configure %c --build=$TRIPLE --target=$TRIPLE --host=$TRIPLE 
--enable-optimized --enable-assertions --enable-pic --enable-targets=host-only
 num_cpu=$(echo `sysctl -n hw.ncpu`)
 make -j $num_cpu

InstallScript: 
 #!/bin/sh -ev
 export LD=`xcode-select  -print-path`/usr/bin/ld
 cd ../llvm_objdir
 make install DESTDIR=%d 
 mkdir -p %i/bin
 ln -s %p/lib/llvm/bin/bugpoint %i/bin/bugpoint
 ln -s %p/lib/llvm/bin/gccas %i/bin/gccas
 ln -s %p/lib/llvm/bin/gccld %i/bin/gccld
 ln -s %p/lib/llvm/bin/llc %i/bin/llc
 ln -s %p/lib/llvm/bin/lli %i/bin/lli
 ln -s %p/lib/llvm/bin/llvm-ar %i/bin/llvm-ar
 ln -s %p/lib/llvm/bin/llvm-as %i/bin/llvm-as
 ln -s %p/lib/llvm/bin/llvm-bcanalyzer %i/bin/llvm-bcanalyzer
 ln -s %p/lib/llvm/bin/llvm-config %i/bin/llvm-config
 ln -s %p/lib/llvm/bin/llvm-db %i/bin/llvm-db
 ln -s %p/lib/llvm/bin/llvm-dis %i/bin/llvm-dis
 ln -s %p/lib/llvm/bin/llvm-extract %i/bin/llvm-extract
 ln -s %p/lib/llvm/bin/llvm-ld %i/bin/llvm-ld
 ln -s %p/lib/llvm/bin/llvm-link %i/bin/llvm-link
 ln -s %p/lib/llvm/bin/llvm-nm %i/bin/llvm-nm
 ln -s %p/lib/llvm/bin/llvm-prof  %i/bin/llvm-prof
 ln -s %p/lib/llvm/bin/llvm-ranlib %i/bin/llvm-ranlib
 ln -s %p/lib/llvm/bin/llvm-stub %i/bin/llvm-stub
 ln -s %p/lib/llvm/bin/llvmc %i/bin/llvmc
 ln -s %p/lib/llvm/bin/opt %i/bin/opt
 # remove build path from .la files
 perl -pi -e s, \-L[^ ']*/%n-%v-%r/llvm_objdir/[^ ']*,,g `find 
%i/lib/llvm/lib -name '*.la'`
 perl -pi -e s,src/fink.build/%n-%v-%r/llvm_objdir/Release/,,g `find 
%i/lib/llvm/lib -name '*.la'`
 rm %i/lib/llvm/lib/LLVMHello*.dylib
 
SplitOff: 
  Package: %N-shlibs
  Files: 
 lib/llvm/lib/libLTO.dylib
   
  Shlibs: 
 %p/lib/llvm/lib/libLTO.dylib 0.0.0 %n (= 2.5-1) 32
  

License: GPL
Description: Low Level Virtual Machine Compiler
DescDetail: 
A compilation strategy designed to enable effective program optimization across
the entire lifetime of a program. LLVM supports effective optimization at
compile time, link-time (particularly interprocedural), run-time and offline 
(i.e., after software is installed), while remaining transparent to developers
and maintaining compatibility with existing build scripts.

DescPackaging: 
The file libLTO.dylib in %p/lib/llvm/lib can be used to replace the libLTO.dylib
in /Developer/usr/lib from Xcode 3.1.2 to enable full LTO support at -O4 in
the compilers of the llvm-gcc42 package. Note that the fink maintainer mode
doesn't understand the @executable_path/../lib/libLTO.dylib syntax in 
libLTO.dylib's
otool -L output.

Homepage: http://llvm.org/
Maintainer: Jack Howarth howa...@bromo.med.uc.edu



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[cvs] dists/10.4/unstable/main/finkinfo/languages llvm-gcc42.info, NONE, 1.1

2009-03-28 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv15080

Added Files:
llvm-gcc42.info 
Log Message:
add llvm-gcc42 package

--- NEW FILE: llvm-gcc42.info ---
Info2: 
Package: llvm-gcc42
Version: 2.5
Revision: 1
Source: http://llvm.org/releases/%v/llvm-gcc-4.2-%v.source.tar.gz
Source-MD5: c5800d85059fcf80429a86c536127595
SourceDirectory: llvm-gcc4.2-%v.source
Type: -64bit
Depends: gmp-shlibs (= 4.2.4-1000), libmpfr1-shlibs (= 2.4.0-1), libiconv, 
libgettext3-shlibs, %N-shlibs (= %v-%r), llvm-shlibs (= 2.5-1)
BuildDepends: gmp (= 4.2.4-1000), libmpfr1 (= 2.4.0-1), libiconv-dev, 
gettext-tools, libgettext3-dev, llvm (= 2.5-1)
ConfigureParams: 
 --prefix=%p/lib/llvm-gcc-4.2 --mandir=%p/share/man --infodir=%p/share/info 
--with-gmp=%p --with-libiconv-prefix=%p --with-system-zlib 
--x-includes=/usr/X11R6/include --x-libraries=/usr/X11R6/lib 
--with-as=`xcode-select  -print-path`/usr/bin/as --with-ld=`xcode-select  
-print-path`/usr/bin/ld --with-nm=`xcode-select  -print-path`/usr/bin/nm

CompileScript: 
 #!/bin/bash -ev
 export LD=`xcode-select  -print-path`/usr/bin/ld
 ulimit -s `ulimit -s`
 darwinvers=`uname -r|cut -f1 -d.`
 mkdir ../llvm_gcc42_objdir
 rm -fr ../llvm-gcc4.2-%v.source/libstdc++-v3
 cd ../llvm_gcc42_objdir
 LLVMOBJDIR=%p/lib/llvm
 if [ `uname -p` = powerpc ]; then
   TRIPLE=powerpc-apple-darwin$darwinvers
   TARGETOPTIONS=
 else
   TRIPLE=i686-apple-darwin$darwinvers
   TARGETOPTIONS=--with-arch=nocona --with-tune=generic
 fi
 ../llvm-gcc4.2-%v.source/configure %c --build=$TRIPLE --target=$TRIPLE 
--host=$TRIPLE $TARGETOPTIONS --with-gxx-include-dir=/usr/include/c++/4.0.0 
--enable-llvm=$LLVMOBJDIR --enable-languages=c,c++,fortran 
 num_cpu=$(echo `sysctl -n hw.ncpu`)
 make -j $num_cpu

InstallScript: 
 #!/bin/sh -ev
 export LD=`xcode-select  -print-path`/usr/bin/ld
 cd ../llvm_gcc42_objdir
 make install DESTDIR=%d 
 mkdir -p %i/bin
 ln -s %p/lib/llvm-gcc-4.2/bin/gcc %i/bin/llvm-gcc-4
 ln -s %p/lib/llvm-gcc-4.2/bin/g++ %i/bin/llvm-g++-4
 ln -s %p/lib/llvm-gcc-4.2/bin/gfortran %i/bin/llvm-gfortran
 ln -s %p/lib/llvm-gcc-4.2/bin/gov %i/bin/llvm-gov
 ln -s /usr/lib/libstdc++.6.dylib %i/lib/llvm-gcc-4.2/lib/libstdc++.6.dylib
 mv %i/share/man/man1/cpp.1 %i/share/man/man1/llvm-cpp-4.1
 mv %i/share/man/man1/gcc.1 %i/share/man/man1/llvm-gcc-4.1
 mv %i/share/man/man1/g++.1 %i/share/man/man1/llvm-g++-4.1
 mv %i/share/man/man1/gcov.1 %i/share/man/man1/llvm-gcov.1
 mv %i/share/man/man1/gfortran.1 %i/share/man/man1/llvm-gfortran.1
 rm %i/share/man/man7/fsf-funding.7
 rm %i/share/man/man7/gfdl.7
 rm %i/share/man/man7/gpl.7

SplitOff: 
  Package: %N-shlibs
  Description: Shared libraries for llvm-gcc42
  Files: 
lib/llvm-gcc-4.2/lib/libgfortran.2*.dylib
lib/llvm-gcc-4.2/lib/libgomp.1*.dylib
lib/llvm-gcc-4.2/lib/libgcc_s.1*.dylib
lib/llvm-gcc-4.2/%lib/libgfortran.2*.dylib
lib/llvm-gcc-4.2/%lib/libgomp.1*.dylib
  
  Shlibs: 
%p/lib/llvm-gcc-4.2/lib/libgfortran.2.dylib 3.0.0 %n (= 2.5-1) 32
%p/lib/llvm-gcc-4.2/lib/libgomp.1.dylib 2.0.0 %n (= 2.5-1) 32
%p/lib/llvm-gcc-4.2/lib/libgcc_s.1.dylib 1.0.0 %n (= 2.5-1) 32-64
%p/lib/llvm-gcc-4.2/%lib/libgfortran.2.dylib 3.0.0 %n (= 2.5-1) 64
%p/lib/llvm-gcc-4.2/%lib/libgomp.1.dylib 2.0.0 %n (= 2.5-1) 64
  

License: GPL
Description: GCC 4.2.1 front-end for LLVM Compiler System
DescDetail: 
GCC 4.2.1 front-end for LLVM Compiler System.

DescPackaging: 
The cctools in /Developer are used so that link time optimization support
is available under Leopard. Note that the recommended approach on darwin is
to not build libdstdc++ but rather use the system's via a symlink.

Homepage: http://llvm.org/
Maintainer: Jack Howarth howa...@bromo.med.uc.edu



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[cvs] dists/10.4/unstable/main/finkinfo/sci ncarg-10.6.info,NONE,1.1

2009-03-28 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv3098

Added Files:
ncarg-10.6.info 
Log Message:
build with gfortran on 10.6

--- NEW FILE: ncarg-10.6.info ---
Package: ncarg
Version: 4.4.1
Revision: 106
Source: http://ngwww.ucar.edu/ngbin/%n-%v.src.tar.gz
Source-MD5: f62f226acc8b5588ff3537f28ac85a7d
SourceDirectory: %n-%v
Conflicts: ralgcm (= 3.50-1)
BuildDepends: gcc44, x11-dev
Distribution: 10.6
Depends: x11
PatchScript: 
  #!/bin/sh -ev
  sed 's|@FINKPREFIX@|%p|g'  %a/%n-10.6.patch | patch -p1
  perl -pi -e 's|uname -m|uname -p|g' config/ymake
  mv config/ymake config/ymake_ori  
  sed 's|DARWIN|Darwin|g'  config/ymake_ori  config/ymake 
  chmod a+x config/ymake

CompileScript: 
#!/bin/sh -ev
 make -C config -f Makefile.ini
 ./config/ymkmf
 make PREFIX=%p Info Makefiles clean includes depend all

InstallScript: 
make PREFIX=%i install
mkdir -p %i/etc/profile.d
install -m 755 ncarg.sh %i/etc/profile.d/
install -m 755 ncarg.csh %i/etc/profile.d/
mv %i/bin/ctrans %i/bin/ctrans.ncarg
mv %i/bin/ictrans %i/bin/ictrans.ncarg
mv %i/bin/idt %i/bin/idt.ncarg
mv %i/bin/med %i/bin/med.ncarg
mv %i/bin/ncargpath %i/bin/ncargpath.ncarg
mv %i/bin/ncarlogo2ps %i/bin/ncarlogo2ps.ncarg
mv %i/include/ncarg/c.h %i/include/ncarg/c.h.ncarg
mv %i/include/ncarg/gks.h %i/include/ncarg/gks.h.ncarg
mv %i/include/ncarg/ncargC.h %i/include/ncarg/ncargC.h.ncarg
mv %i/lib/ncarg/database/Earth..1.areas 
%i/lib/ncarg/database/Earth..1.areas.ncarg
mv %i/lib/ncarg/database/Earth..1.lines 
%i/lib/ncarg/database/Earth..1.lines.ncarg
mv %i/lib/ncarg/database/Earth..1.names 
%i/lib/ncarg/database/Earth..1.names.ncarg
mv %i/lib/ncarg/database/Earth..2.areas 
%i/lib/ncarg/database/Earth..2.areas.ncarg
mv %i/lib/ncarg/database/Earth..2.lines 
%i/lib/ncarg/database/Earth..2.lines.ncarg
mv %i/lib/ncarg/database/Earth..2.names 
%i/lib/ncarg/database/Earth..2.names.ncarg
mv %i/lib/ncarg/database/Earth..3.areas 
%i/lib/ncarg/database/Earth..3.areas.ncarg
mv %i/lib/ncarg/database/Earth..3.lines 
%i/lib/ncarg/database/Earth..3.lines.ncarg
mv %i/lib/ncarg/database/Earth..3.names 
%i/lib/ncarg/database/Earth..3.names.ncarg
mv %i/lib/ncarg/database/ezmap_area_ids 
%i/lib/ncarg/database/ezmap_area_ids.ncarg
mv %i/lib/ncarg/database/EzmapAreaInfo.CO 
%i/lib/ncarg/database/EzmapAreaInfo.CO.ncarg
mv %i/lib/ncarg/database/EzmapAreaInfo.PO 
%i/lib/ncarg/database/EzmapAreaInfo.PO.ncarg
mv %i/lib/ncarg/database/EzmapAreaInfo.PS 
%i/lib/ncarg/database/EzmapAreaInfo.PS.ncarg
mv %i/lib/ncarg/database/EzmapAreaInfo.US 
%i/lib/ncarg/database/EzmapAreaInfo.US.ncarg
mv %i/lib/ncarg/database/ezmapdata %i/lib/ncarg/database/ezmapdata.ncarg
mv %i/lib/ncarg/database/EzmapOutlines.CO 
%i/lib/ncarg/database/EzmapOutlines.CO.ncarg
mv %i/lib/ncarg/database/EzmapOutlines.PO 
%i/lib/ncarg/database/EzmapOutlines.PO.ncarg
mv %i/lib/ncarg/database/EzmapOutlines.PS 
%i/lib/ncarg/database/EzmapOutlines.PS.ncarg
mv %i/lib/ncarg/database/EzmapOutlines.US 
%i/lib/ncarg/database/EzmapOutlines.US.ncarg
mv %i/lib/ncarg/database/PlotcharData %i/lib/ncarg/database/PlotcharData.ncarg
mv %i/lib/ncarg/database/pwritdata %i/lib/ncarg/database/pwritdata.ncarg
mv %i/lib/ncarg/database/ranfdata %i/lib/ncarg/database/ranfdata.ncarg
mv %i/lib/ncarg/fontcaps/font1 %i/lib/ncarg/fontcaps/font1.ncarg
mv %i/lib/ncarg/fontcaps/font10 %i/lib/ncarg/fontcaps/font10.ncarg
mv %i/lib/ncarg/fontcaps/font11 %i/lib/ncarg/fontcaps/font11.ncarg
mv %i/lib/ncarg/fontcaps/font12 %i/lib/ncarg/fontcaps/font12.ncarg
mv %i/lib/ncarg/fontcaps/font13 %i/lib/ncarg/fontcaps/font13.ncarg
mv %i/lib/ncarg/fontcaps/font14 %i/lib/ncarg/fontcaps/font14.ncarg
mv %i/lib/ncarg/fontcaps/font15 %i/lib/ncarg/fontcaps/font15.ncarg
mv %i/lib/ncarg/fontcaps/font16 %i/lib/ncarg/fontcaps/font16.ncarg
mv %i/lib/ncarg/fontcaps/font17 %i/lib/ncarg/fontcaps/font17.ncarg
mv %i/lib/ncarg/fontcaps/font18 %i/lib/ncarg/fontcaps/font18.ncarg
mv %i/lib/ncarg/fontcaps/font19 %i/lib/ncarg/fontcaps/font19.ncarg
mv %i/lib/ncarg/fontcaps/font2 %i/lib/ncarg/fontcaps/font2.ncarg
mv %i/lib/ncarg/fontcaps/font20 %i/lib/ncarg/fontcaps/font20.ncarg
mv %i/lib/ncarg/fontcaps/font21 %i/lib/ncarg/fontcaps/font21.ncarg
mv %i/lib/ncarg/fontcaps/font22 %i/lib/ncarg/fontcaps/font22.ncarg
mv %i/lib/ncarg/fontcaps/font25 %i/lib/ncarg/fontcaps/font25.ncarg
mv %i/lib/ncarg/fontcaps/font26 %i/lib/ncarg/fontcaps/font26.ncarg
mv %i/lib/ncarg/fontcaps/font29 %i/lib/ncarg/fontcaps/font29.ncarg
mv %i/lib/ncarg/fontcaps/font3 %i/lib/ncarg/fontcaps/font3.ncarg
mv %i/lib/ncarg/fontcaps/font30 %i/lib/ncarg/fontcaps/font30.ncarg
mv %i/lib/ncarg/fontcaps/font33 %i/lib/ncarg/fontcaps/font33.ncarg
mv %i/lib/ncarg/fontcaps/font34 %i/lib/ncarg/fontcaps/font34.ncarg
mv %i/lib/ncarg/fontcaps/font35 %i/lib/ncarg/fontcaps/font35.ncarg
mv %i/lib/ncarg/fontcaps/font36 %i/lib/ncarg/fontcaps/font36.ncarg
mv %i/lib/ncarg/fontcaps/font37 

[cvs] dists/10.4/unstable/main/finkinfo/sci ncarg-10.6.patch, NONE, 1.1

2009-03-28 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv3138

Added Files:
ncarg-10.6.patch 
Log Message:
build with gfortran on 10.6

--- NEW FILE: ncarg-10.6.patch ---
--- ncarg-4.3.1/ncarg.csh   Thu May  9 05:55:35 2002
+++ ncarg-4.3.1/ncarg.csh   Thu May  9 05:50:37 2002
@@ -0,0 +1,3 @@
+# ncarg.csh
+
+setenv   NCARG_ROOT   @FINKPREFIX@
--- ncarg-4.3.1/ncarg.shThu May  9 05:55:35 2002
+++ ncarg-4.3.1/ncarg.shThu May  9 05:50:37 2002
@@ -0,0 +1,4 @@
+# ncarg.sh
+
+ncarg_ro...@finkprefix@
+export NCARG_ROOT
--- ncarg-4.3.1/config/Site.local.orig  Thu Oct 31 06:29:10 2002
+++ ncarg-4.3.1/config/Site.local   Thu Oct 31 09:18:57 2002
@@ -0,0 +1,21 @@
+/*
+ * This file was created by the Configure script.
+ */
+
+#ifdef FirstSite
+
+#endif /* FirstSite */
+
+#ifdef SecondSite
+
+#define YmakeRoot $(PREFIX)
+#define ManRoot $(PREFIX)/share/man
+#define LibSearch -...@finkprefix@/lib -L/usr/X11R6/lib
+#define IncSearch -...@finkprefix@/include -I/usr/X11R6/include
+#define BuildRasterHDF FALSE
+#define MakeDepend /usr/X11R6/bin/makedepend
+#define HDFlib -...@finkprefix@/lib/gcc4.4/lib -lgfortran
+#define COptimizeFlag  -O3
+#define FOptimizeFlag  -O3
+
+#endif /* SecondSite */
--- ncarg-4.3.1/ncarg2d/src/bin/scripts/ncargcc.csh.orig Thu May 30 15:04:00 
2002
+++ ncarg-4.3.1/ncarg2d/src/bin/scripts/ncargcc.csh Thu Oct 31 10:38:58 2002
@@ -46,7 +46,7 @@
 set libpath = -L$libdir $syslibdir
 set incpath = -I$incdir
 
-set libextra = 
+set libextra = -...@finkprefix@/lib/gcc4.4/lib -lgfortran
 
 set newargv = $cc $defines $loadflags
 
--- ncarg-4.3.1/config/ymake.orig   Mon Oct 27 11:22:31 2003
+++ ncarg-4.3.1/config/ymakeMon Oct 27 11:22:49 2003
@@ -405,18 +405,10 @@
 caseDarwin:
 set os = $opsys
 
-switch ($mach[1])
-casePower:
-set model   = $mach
-set arch= $mach
-set sysincs = DARWIN
-set vendor  = Apple
-breaksw
-default:
-echo $0 : Unknown machine type  /dev/tty
-exit 1
-endsw
-
+set model   = $mach
+set arch= $mach
+set sysincs = DARWIN
+set vendor  = Apple
 breaksw
 
 case   CYGWIN:
--- ncarg/config/Darwin.orig2006-01-10 05:39:37.0 -0700
+++ ncarg/config/Darwin 2006-01-10 05:40:03.0 -0700
@@ -22,14 +22,15 @@
  * default setup.
  */
 #define HdfDefines  -DDARWIN
-#define StdDefines  -DSYSV -D_POSIX_SOURCE -D_XOPEN_SOURCE
+#define StdDefines  -DSYSV -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE 
-D__UNIXOS2__ -DByteSwapped
+#define ByteSwapped
 #define Cstatic 
 #define Cdynamic 
 #define CppCommand '/usr/bin/cpp -traditional'
 #define CCompiler   gcc
-#define CtoFLibraries   -lg2c -lcc_dynamic
-#define ExtraSysLibraries   -lcc_dynamic
-#define FCompiler   g77
+#define CtoFLibraries   -...@finkprefix@/lib/gcc4.4/lib -lgfortran
+#define ExtraSysLibraries 
+#define FCompiler   gfortran
 #define CcOptions  -ansi
 #define XToolLibrary-lXt -lSM -lICE
 #define BuildShared NO
--- ncarg-4.4.1/ncarg2d/src/bin/impltest/tlocal32.f.org 2009-03-28 
22:14:19.0 -0400
+++ ncarg-4.4.1/ncarg2d/src/bin/impltest/tlocal32.f 2009-03-28 
22:23:50.0 -0400
@@ -36,8 +36,10 @@
 C IAND, IOR, ISHIFT, GBYTES, SBYTES
 C
   INTEGER BYTLNG,WRDLNG
-  DIMENSION MASK0(64)
-  DIMENSION MASK1(65)
+  INTEGER*8 MASK0(64)
+C  DIMENSION MASK0(64)
+  INTEGER*8 MASK1(64)
+C  DIMENSION MASK1(65)
   DIMENSION ISCR(190)
 C
 C This is a test package designed to test the locally


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[cvs] dists/10.4/unstable/main/finkinfo/net cyrus-sasl2.info, 1.11, 1.12

2009-03-28 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/net
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv30503

Modified Files:
cyrus-sasl2.info 
Log Message:
resort to --host to allow builds on 10.6

Index: cyrus-sasl2.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/net/cyrus-sasl2.info,v
retrieving revision 1.11
retrieving revision 1.12
diff -u -d -r1.11 -r1.12
--- cyrus-sasl2.info24 Feb 2009 15:04:27 -  1.11
+++ cyrus-sasl2.info29 Mar 2009 04:57:10 -  1.12
@@ -50,7 +50,7 @@
if [ %type_raw[-64bit] == -64bit ]; then
export CC=gcc -m64
fi
-   ./configure %c
+   ./configure %c --host=`uname -p`-apple-darwin`uname -r`
make SASL_DB_LIB=-L%p/%lib -ldb-4.7 LIBTOOL=glibtool
 
 InstallScript: 


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[cvs] dists/10.4/unstable/main/finkinfo/languages itk.info,1.1,1.2

2009-03-29 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv28167

Modified Files:
itk.info 
Log Message:
add missing ConfigureParams for -with-itcl, -x-includes and --x-libraries for 
10.6

Index: itk.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages/itk.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- itk.info17 Dec 2008 16:27:47 -  1.1
+++ itk.info29 Mar 2009 19:16:00 -  1.2
@@ -1,7 +1,7 @@
 Info2: 
 Package: itk 
 Version: 3.3 
-Revision: 1
+Revision: 2
 Description: Mega-widget support for Tcl 
 DescDetail: 
 
@@ -20,7 +20,7 @@
 SetCFLAGS: -I%p/include -I../tcl%type_raw[tcltk]/unix 
-I../tcl%type_raw[tcltk]/generic -I../tk%type_raw[tcltk]/unix 
-I../tk%type_raw[tcltk]/generic
 SetCPP: /usr/bin/cpp
 SetLDFLAGS: -L%p/lib/itcl%v  -L%p/lib
-ConfigureParams: --prefix=%i --exec-prefix=%i --mandir=%p/share/man 
--infodir=%p/share/info --with-tcl=%p/lib --with-tk=%p/lib
+ConfigureParams: --prefix=%i --exec-prefix=%i --mandir=%p/share/man 
--infodir=%p/share/info --with-tcl=%p/lib --with-tk=%p/lib -with-itcl=%p/lib 
-x-includes=/usr/X11R6/include --x-libraries=/usr/X11R6/lib
 PatchScript:  perl -pi -e 's|\...@shlib_ld\@|\...@shlib_ld\@  -install_name 
%p/lib/%n%v/lib%n%v.dylib|g'  Makefile.in
 DocFiles: CHANGES README TODOlicense.terms  INCOMPATIBLE
 SplitOff: 
@@ -43,4 +43,4 @@
 
 DocFiles:  CHANGES README TODOlicense.terms  INCOMPATIBLE
 
- 
\ No newline at end of file
+ 


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[cvs] dists/10.4/unstable/main/finkinfo/languages tktreectrl.info, 1.1, 1.2

2009-03-29 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv28279

Modified Files:
tktreectrl.info 
Log Message:
add missing ConfigureParams for  -x-includes and --x-libraries for 10.6

Index: tktreectrl.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages/tktreectrl.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- tktreectrl.info 17 Dec 2008 16:27:47 -  1.1
+++ tktreectrl.info 29 Mar 2009 19:16:58 -  1.2
@@ -1,7 +1,7 @@
 Info2: 
 Package: tktreectrl 
 Version: 2.1 
-Revision: 1
+Revision: 2
 Description: Flexible listbox widget for Tk
 Maintainer: Steffen Schmidt steffen.schm...@tuebingen.mpg.de
 DescDetail: 
@@ -20,7 +20,7 @@
 SourceDirectory: %n-%v
 SetCFLAGS: -I%p/include -I../tcl%type_raw[tcltk]/unix 
-I../tcl%type_raw[tcltk]/generic -I../tk%type_raw[tcltk]/unix 
-I../tk%type_raw[tcltk]/generic
 SetCPP: /usr/bin/cpp
-ConfigureParams: --prefix=%i --exec-prefix=%i --mandir=%p/share/man 
--infodir=%p/share/info --with-tcl=%p/lib --with-tk=%p/lib
+ConfigureParams: --prefix=%i --exec-prefix=%i --mandir=%p/share/man 
--infodir=%p/share/info --with-tcl=%p/lib --with-tk=%p/lib 
--x-includes=/usr/X11R6/include --x-libraries=/usr/X11R6/lib
 DocFiles: README.txt license.terms 
 PatchScript:  perl -pi -e 's|\...@shlib_ld\@|\...@shlib_ld\@  -install_name 
%p/lib/treectrl%v/libtreectrl%v.dylib|g'  Makefile.in
 SplitOff: 
@@ -34,4 +34,4 @@
 DocFiles: README.txt license.terms 
 
  
- 
\ No newline at end of file
+


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[cvs] dists/10.4/unstable/main/finkinfo/devel cloog.info,1.1,1.2

2009-03-30 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/devel
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv22090

Modified Files:
cloog.info 
Log Message:
update tarball md5

Index: cloog.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/devel/cloog.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- cloog.info  28 Mar 2009 03:38:21 -  1.1
+++ cloog.info  31 Mar 2009 02:18:33 -  1.2
@@ -5,7 +5,7 @@
 BuildDependsOnly: True
 Depends: %N-shlibs (= %v-%r), ppl-shlibs (= 0.10-1)
 Source: ftp://gcc.gnu.org/pub/gcc/infrastructure/%N-ppl-%v.tar.gz
-Source-MD5: 716b7a0823f96c9d02c1703a9c47d387
+Source-MD5: 44049c8b337b9728968ed462c6d2b523
 SourceDirectory: %n-ppl
 Distribution: 10.5, 10.6
 ConfigureParams: --prefix=%p --mandir=%p/share/man --with-ppl=%p


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[cvs] dists/10.4/unstable/main/finkinfo/devel cloog.patch,NONE,1.1

2009-03-31 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/devel
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv30691

Added Files:
cloog.patch 
Log Message:
add patch until tarball is fixed

--- NEW FILE: cloog.patch ---
diff -uNr cloog-ppl/aclocal.m4 cloog-ppl.autogen/aclocal.m4
--- cloog-ppl/aclocal.m42009-03-29 16:29:49.0 -0400
+++ cloog-ppl.autogen/aclocal.m42009-03-31 15:30:33.0 -0400
@@ -1,7 +1,7 @@
-# generated automatically by aclocal 1.7.9 -*- Autoconf -*-
+# generated automatically by aclocal 1.10.1 -*- Autoconf -*-
 
-# Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2002
-# Free Software Foundation, Inc.
+# Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004,
+# 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
 # with or without modifications, as long as this notice is preserved.
@@ -11,5541 +11,4652 @@
 # even the implied warranty of MERCHANTABILITY or FITNESS FOR A
 # PARTICULAR PURPOSE.
 
-# Do all the work for Automake.-*- Autoconf -*-
[...84773 lines suppressed...]
 
 .PHONY: all all-am check check-am clean clean-generic clean-libtool \
distclean distclean-generic distclean-libtool distdir dvi \
-   dvi-am info info-am install install-am install-data \
-   install-data-am install-exec install-exec-am install-info \
-   install-info-am install-man install-strip installcheck \
-   installcheck-am installdirs maintainer-clean \
+   dvi-am html html-am info info-am install install-am \
+   install-data install-data-am install-dvi install-dvi-am \
+   install-exec install-exec-am install-html install-html-am \
+   install-info install-info-am install-man install-pdf \
+   install-pdf-am install-ps install-ps-am install-strip \
+   installcheck installcheck-am installdirs maintainer-clean \
maintainer-clean-generic mostlyclean mostlyclean-generic \
-   mostlyclean-libtool pdf pdf-am ps ps-am uninstall uninstall-am \
-   uninstall-info-am
+   mostlyclean-libtool pdf pdf-am ps ps-am uninstall uninstall-am
 
 
 generate:


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[cvs] dists/10.4/unstable/main/finkinfo/devel cloog.info,1.2,1.3

2009-03-31 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/devel
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv30944

Modified Files:
cloog.info 
Log Message:
add patch until tarball is fixed

Index: cloog.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/devel/cloog.info,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -d -r1.2 -r1.3
--- cloog.info  31 Mar 2009 02:18:33 -  1.2
+++ cloog.info  31 Mar 2009 23:40:11 -  1.3
@@ -1,12 +1,14 @@
 Package: cloog
 Version: 0.15
 Revision: 1
-BuildDepends: ppl (= 0.10-1)
+BuildDepends: ppl (= 0.10-1), fink (= 0.24.12)
 BuildDependsOnly: True
 Depends: %N-shlibs (= %v-%r), ppl-shlibs (= 0.10-1)
 Source: ftp://gcc.gnu.org/pub/gcc/infrastructure/%N-ppl-%v.tar.gz
 Source-MD5: 44049c8b337b9728968ed462c6d2b523
 SourceDirectory: %n-ppl
+PatchFile: %n.patch
+PatchFile-MD5: a1b7cc9fbafdcd2c302bdc3a5450261f
 Distribution: 10.5, 10.6
 ConfigureParams: --prefix=%p --mandir=%p/share/man --with-ppl=%p
 InstallScript: 


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[cvs] dists/10.4/unstable/main/finkinfo/sci pymol-py.info,1.23,1.24

2009-03-31 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv32485

Modified Files:
pymol-py.info 
Log Message:
add eMovie but not to open automatically

Index: pymol-py.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/pymol-py.info,v
retrieving revision 1.23
retrieving revision 1.24
diff -u -d -r1.23 -r1.24
--- pymol-py.info   29 Mar 2009 07:44:27 -  1.23
+++ pymol-py.info   31 Mar 2009 23:55:24 -  1.24
@@ -1,7 +1,7 @@
 Info2: 
 Package: pymol-py%type_pkg[python]
 Version: 1.1r2
-Revision: 1001
+Revision: 1002
 Distribution: (%type_pkg[python] = 23) 10.3, (%type_pkg[python] = 23) 10.4
 Maintainer: Jack Howarth howa...@nitro.med.uc.edu
 Type: python (2.3 2.4 2.5)
@@ -9,10 +9,12 @@
 Source: http://diablo.ucsc.edu/~wgscott/pymol/pymol-%v-src.tgz
 Source-MD5: 1ffa3e276360694012ce6e2029f6ea91
 PatchFile: pymol-py.patch
-PatchFile-MD5: f0a874382d1670e27beae91b52e5d4d0
+PatchFile-MD5: dfe119e234a40b6238be4f1b9cf62793
 SourceDirectory: pymol-1.1
-# Source2: http://www.weizmann.ac.il/ISPC/eMovie.py
-# Source2-MD5: 0d2236e26f00d944223f6c17049c2b97
+Source2: http://www.weizmann.ac.il/ISPC/eMovie.py
+Source2-MD5: 832252d4cee1ba88d50a35681b5ecd4b
+Source3: http://www.weizmann.ac.il/ISPC/eMovie_rigimol.inp
+Source3-MD5: 7f61fc224103aa24a92f1a03f985ce49
 Depends: python%type_pkg[python], libpng3-shlibs, numeric-py%type_pkg[python], 
tcltk, pmw-py%type_pkg[python] (= 1.2-1), freeglut-shlibs, blt-shlibs
 BuildDepends: libpng3, freeglut, db43-ssl (= 4.3.29-1001)|db43 (= 
4.3.29-1001), readline (= 4.3-1028), gdbm3, expat, tcltk-dev, blt, x11-dev, 
fink (= 0.24.12)
 Conflicts: pymol, pymol-py22, pymol-py23, pymol-py24, pymol-py25
@@ -31,7 +33,8 @@
 (cd setup; cp pymol.com.osx-fink %i/lib/%n/bin/pymol) || exit 1
 cp -r data modules examples test scripts %i/lib/%n
 ln -s %p/share/doc/%n/LICENSE %i/lib/%n/LICENSE.txt
-# cp ../eMovie.py %p/lib/python%type_raw[python]/modules/pmg_tk/startup/.
+cp ../eMovie.py 
%i/lib/pymol-py%type_pkg[python]/modules/pmg_tk/startup/eMovie.py
+cp ../eMovie_rigimol.inp %i/lib/pymol-py%type_pkg[python]/eMovie_rigimol.inp
 
 DocFiles: DEVELOPERS LICENSE README
 PostInstScript: 


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[cvs] dists/10.4/unstable/main/finkinfo/sci pymol-py.patch,1.9,1.10

2009-03-31 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv32564

Modified Files:
pymol-py.patch 
Log Message:
add eMovie but not to open automatically

Index: pymol-py.patch
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/pymol-py.patch,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -d -r1.9 -r1.10
--- pymol-py.patch  8 Mar 2009 20:40:24 -   1.9
+++ pymol-py.patch  31 Mar 2009 23:55:47 -  1.10
@@ -114,3 +114,14 @@
  #define ENDF(G)  ); FeedbackAdd(G,_FBstr);}
  
  /* debugging: goes to stderr */
+--- pymol/../eMovie.py.org 2009-03-31 19:19:48.0 -0400
 pymol/../eMovie.py 2009-03-31 19:20:35.0 -0400
+@@ -188,7 +188,7 @@
+   cmd.extend('mvSet',mv_set) # adjust parameter over frame range
+ 
+   # KR: finally, call open_eMovie:
+-  open_eMovie()
++# open_eMovie()
+   
+ 
+ def open_eMovie():


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[cvs] dists/10.4/unstable/main/finkinfo/devel cloog.info,1.3,1.4

2009-04-01 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/devel
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv31191

Modified Files:
cloog.info 
Log Message:
better fix for broken tarball and gmp dependency fix

Index: cloog.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/devel/cloog.info,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- cloog.info  31 Mar 2009 23:40:11 -  1.3
+++ cloog.info  1 Apr 2009 15:34:06 -   1.4
@@ -1,14 +1,18 @@
 Package: cloog
 Version: 0.15
 Revision: 1
-BuildDepends: ppl (= 0.10-1), fink (= 0.24.12)
+BuildDepends: ppl (= 0.10-1), gmp (= 4.2.4-1000), libtool14, fink (= 
0.24.12)
 BuildDependsOnly: True
-Depends: %N-shlibs (= %v-%r), ppl-shlibs (= 0.10-1)
+Depends: %N-shlibs (= %v-%r), ppl-shlibs (= 0.10-1), gmp-shlibs (= 
4.2.4-1000)
 Source: ftp://gcc.gnu.org/pub/gcc/infrastructure/%N-ppl-%v.tar.gz
 Source-MD5: 44049c8b337b9728968ed462c6d2b523
 SourceDirectory: %n-ppl
 PatchFile: %n.patch
-PatchFile-MD5: a1b7cc9fbafdcd2c302bdc3a5450261f
+PatchFile-MD5: de6501787e5932ee288745982959652d
+PatchScript: 
+patch -p1  %{PatchFile}
+./autogen.sh
+
 Distribution: 10.5, 10.6
 ConfigureParams: --prefix=%p --mandir=%p/share/man --with-ppl=%p
 InstallScript: 


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[cvs] dists/10.4/unstable/main/finkinfo/devel cloog.patch,1.1,NONE

2009-04-01 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/devel
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv3099

Removed Files:
cloog.patch 
Log Message:
remove patch

--- cloog.patch DELETED ---


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[cvs] dists/10.4/unstable/main/finkinfo/devel cloog.patch,1.2,1.3

2009-04-01 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/devel
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv3286

Added Files:
cloog.patch 
Log Message:
add patch

--- NEW FILE: cloog.patch ---
--- cloog-ppl/configure.in  2009-03-29 15:05:36.0 -0400
+++ cloog-ppl.autogen/configure.in  2009-04-01 09:51:20.0 -0400
@@ -103,8 +103,9 @@
 dnl Checks for library functions.
 AC_CHECK_FUNCS(strtol)
 
-AC_CHECK_HEADER(sys/resource.h,[AC_DEFINE(HAS_SYS_RESOURCE_H)],
-   [AC_MSG_RESULT([no])])
+if test x$has_sys_resource = xyes; then
+  AC_DEFINE(HAS_SYS_RESOURCE_H, 1, [whether we have sys/resource.h])
+fi
 
 dnl /**
 dnl  * Option setting *


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[cvs] dists/10.4/unstable/main/finkinfo/sci pymol-py.info,1.24,1.25

2009-04-04 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv15852

Modified Files:
pymol-py.info 
Log Message:
add pynmr plugin

Index: pymol-py.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/pymol-py.info,v
retrieving revision 1.24
retrieving revision 1.25
diff -u -d -r1.24 -r1.25
--- pymol-py.info   31 Mar 2009 23:55:24 -  1.24
+++ pymol-py.info   4 Apr 2009 15:37:09 -   1.25
@@ -1,7 +1,7 @@
 Info2: 
 Package: pymol-py%type_pkg[python]
 Version: 1.1r2
-Revision: 1002
+Revision: 1003
 Distribution: (%type_pkg[python] = 23) 10.3, (%type_pkg[python] = 23) 10.4
 Maintainer: Jack Howarth howa...@nitro.med.uc.edu
 Type: python (2.3 2.4 2.5)
@@ -9,12 +9,14 @@
 Source: http://diablo.ucsc.edu/~wgscott/pymol/pymol-%v-src.tgz
 Source-MD5: 1ffa3e276360694012ce6e2029f6ea91
 PatchFile: pymol-py.patch
-PatchFile-MD5: dfe119e234a40b6238be4f1b9cf62793
+PatchFile-MD5: a4f57e5e63e138c66025e094b37dd561
 SourceDirectory: pymol-1.1
 Source2: http://www.weizmann.ac.il/ISPC/eMovie.py
 Source2-MD5: 832252d4cee1ba88d50a35681b5ecd4b
 Source3: http://www.weizmann.ac.il/ISPC/eMovie_rigimol.inp
 Source3-MD5: 7f61fc224103aa24a92f1a03f985ce49
+Source4: http://maple.rsvs.ulaval.ca/software/pynmr/pynmr_0.37f_OSX.tar.gz
+Source4-MD5: a81dc5942c31f649cefc58cd6485146d
 Depends: python%type_pkg[python], libpng3-shlibs, numeric-py%type_pkg[python], 
tcltk, pmw-py%type_pkg[python] (= 1.2-1), freeglut-shlibs, blt-shlibs
 BuildDepends: libpng3, freeglut, db43-ssl (= 4.3.29-1001)|db43 (= 
4.3.29-1001), readline (= 4.3-1028), gdbm3, expat, tcltk-dev, blt, x11-dev, 
fink (= 0.24.12)
 Conflicts: pymol, pymol-py22, pymol-py23, pymol-py24, pymol-py25
@@ -27,14 +29,26 @@
 10.*) perl -pi -e s,-Wno-long-double,, ./Rules.delsci ;;
 esac
 make -f Makefile.delsci
+cd %b/../pynmr/meschach
+rm meschach.a
+make basic
+cd ../pmg_tk/startup/pynmr
+./run.macos
 
 InstallScript: 
+#! /bin/sh -ex
 mkdir -p %i/lib/%n/bin
 (cd setup; cp pymol.com.osx-fink %i/lib/%n/bin/pymol) || exit 1
 cp -r data modules examples test scripts %i/lib/%n
 ln -s %p/share/doc/%n/LICENSE %i/lib/%n/LICENSE.txt
 cp ../eMovie.py 
%i/lib/pymol-py%type_pkg[python]/modules/pmg_tk/startup/eMovie.py
 cp ../eMovie_rigimol.inp %i/lib/pymol-py%type_pkg[python]/eMovie_rigimol.inp
+mkdir %i/lib/pymol-py%type_pkg[python]/modules/pmg_tk/startup/pynmr
+cd %b/../pynmr/pmg_tk/startup
+cp plug_nmr.py %i/lib/pymol-py%type_pkg[python]/modules/pmg_tk/startup
+cd pynmr
+cp -r Crmsd.so *.py BIOPYTHON_LICENSE LICENSE README help images test_data 
%i/lib/pymol-py%type_pkg[python]/modules/pmg_tk/startup/pynmr
+rm 
%i/lib/pymol-py%type_pkg[python]/modules/pmg_tk/startup/pynmr/test_data/.noe.tbl.swp
 
 DocFiles: DEVELOPERS LICENSE README
 PostInstScript: 


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[cvs] dists/10.4/unstable/main/finkinfo/sci pymol-py.patch,1.10,1.11

2009-04-04 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv15901

Modified Files:
pymol-py.patch 
Log Message:
add pynmr plugin

Index: pymol-py.patch
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/pymol-py.patch,v
retrieving revision 1.10
retrieving revision 1.11
diff -u -d -r1.10 -r1.11
--- pymol-py.patch  31 Mar 2009 23:55:47 -  1.10
+++ pymol-py.patch  4 Apr 2009 15:37:32 -   1.11
@@ -125,3 +125,50 @@

  
  def open_eMovie():
+--- pymol/../pynmr/pmg_tk/startup/pynmr/run.macos.org  2006-04-06 
10:10:45.0 -0400
 pymol/../pynmr/pmg_tk/startup/pynmr/run.macos  2009-04-03 
21:04:39.0 -0400
+@@ -1,4 +1,4 @@
+-/Users/leigh/pynmr/swig/swig -python -I/Users/leigh/pynmr/swig/Lib/ 
-I/Users/leigh/pynmr/swig/Lib/python Crmsd.i
++../../../swig/swig -python -I../../../swig/Lib -I../../../swig/Lib//python 
Crmsd.i
+ 
+ # now fix the error that swig produces...
+ sed -e '/SWIG_init/s/init_/init/' -e '/SWIG_name/s/_Crmsd/Crmsd/ ' 
Crmsd_wrap.c  Crmsd_wrap2.c
+@@ -8,8 +8,8 @@
+ #gcc -c Crmsd.c Crmsd_wrap.c -I../../../meschach -I/usr/include/python2.3 -lm 
+ #gcc -shared Crmsd.o Crmsd_wrap.o meschach.a -o Crmsd.so
+ 
+-gcc -fno-common -c Crmsd.c Crmsd_wrap.c -I/Users/leigh/pynmr/meschach 
-I/usr/include/python2.3  -D_POSIX_C_SOURCE
+-gcc -bundle -flat_namespace -L/usr/include/python2.3 Crmsd.o Crmsd_wrap.o 
/Users/leigh/pynmr/meschach/meschach.a -lPython -o Crmsd.so
++gcc -O3 -m32 -fno-common -c Crmsd.c Crmsd_wrap.c -I../../../meschach 
-...@finkprefix@/include/python2.X  -D_POSIX_C_SOURCE
++gcc -O3 -m32 -bundle -flat_namespace Crmsd.o Crmsd_wrap.o 
../../../meschach/meschach.a -...@finkprefix@/lib/python2.X/config -lpython2.X 
-o Crmsd.so
+ 
+ 
+ 
+--- pymol/../pynmr/meschach/makefile.org   2006-04-06 09:09:09.0 
-0400
 pymol/../pynmr/meschach/makefile   2009-04-01 00:26:44.0 -0400
+@@ -8,14 +8,14 @@
+ 
+ srcdir = .
+ 
+-CC = gcc
++CC = gcc -m32
+ 
+ DEFS = -DHAVE_CONFIG_H
+ LIBS =  -lm
+ RANLIB = ranlib
+ 
+ 
+-CFLAGS = -O -fPIC
++CFLAGS = -O3 -fPIC
+ 
+ 
+ .c.o:
+--- pymol/../pynmr/pmg_tk/startup/pynmr/test_data/test.script.org  
2009-04-04 00:49:35.0 -0400
 pymol/../pynmr/pmg_tk/startup/pynmr/test_data/test.script  2009-04-04 
00:52:04.0 -0400
+@@ -6,5 +6,5 @@
+   pairfit=0)
+ nmr_cmd.C_do_best_range('test_1', 'C N CA', \
+   test_1 test_2 test_3, all, \
+-  /home2/leigh/Proj/pynmr/pmg_tk/startup/pynmr/test_data/, 1.0)
++  @FINKPREFIX@/lib/pymol-py2X/modules/pmg_tk/startup/pynmr/test_data, 
1.0)
+ 


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[cvs] dists/10.4/unstable/main/finkinfo/languages gcc44.info,1.1,1.2

2009-04-06 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv18663

Modified Files:
gcc44.info 
Log Message:
add missing libgmpxx-shlibs dependency for gcc44

Index: gcc44.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages/gcc44.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- gcc44.info  28 Mar 2009 03:47:47 -  1.1
+++ gcc44.info  6 Apr 2009 13:17:57 -   1.2
@@ -14,7 +14,7 @@
 NoSetLDFLAGS: True
 Conflicts: gcc4, gcc42, gcc43
 Replaces: gcc4, gcc42, gcc43
-Depends: gmp-shlibs (= 4.2.4-1000), libmpfr1-shlibs (= 2.3.2-1), %N-shlibs 
(= %v-%r), libiconv, libgettext3-shlibs, ppl-shlibs (= 0.10-1), cloog-shlibs 
(= 0.15-1), xcode (= 2.5)
+Depends: gmp-shlibs (= 4.2.4-1000), libgmpxx-shlibs (= 4.2.4-1000), 
libmpfr1-shlibs (= 2.3.2-1), %N-shlibs (= %v-%r), libiconv, 
libgettext3-shlibs, ppl-shlibs (= 0.10-1), cloog-shlibs (= 0.15-1), xcode (= 
2.5)
 BuildDepends: gmp (= 4.2.4-1000), libmpfr1 (= 2.3.2-1), libiconv-dev, 
gettext-tools, libgettext3-dev, ppl (= 0.10-1), cloog (= 0.15-1), xcode (= 
2.5), fink (= 0.24.12)
 ConfigureParams: 
  --prefix=%p/lib/gcc4.4 --mandir=%p/share/man --infodir=%p/share/info 
--enable-languages=c,c++,fortran,objc,java \


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[cvs] dists/10.4/unstable/main/finkinfo/devel cloog.patch,1.3,NONE

2009-04-06 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/devel
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv21054

Removed Files:
cloog.patch 
Log Message:
remove cloog.patch

--- cloog.patch DELETED ---


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[cvs] dists/10.4/unstable/main/finkinfo/devel cloog.info,1.4,1.5

2009-04-06 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/devel
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv21184

Modified Files:
cloog.info 
Log Message:
update to cloog 0.15.2

Index: cloog.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/devel/cloog.info,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -d -r1.4 -r1.5
--- cloog.info  1 Apr 2009 15:34:06 -   1.4
+++ cloog.info  6 Apr 2009 13:25:19 -   1.5
@@ -1,20 +1,14 @@
 Package: cloog
-Version: 0.15
+Version: 0.15.2
 Revision: 1
 BuildDepends: ppl (= 0.10-1), gmp (= 4.2.4-1000), libtool14, fink (= 
0.24.12)
 BuildDependsOnly: True
 Depends: %N-shlibs (= %v-%r), ppl-shlibs (= 0.10-1), gmp-shlibs (= 
4.2.4-1000)
 Source: ftp://gcc.gnu.org/pub/gcc/infrastructure/%N-ppl-%v.tar.gz
-Source-MD5: 44049c8b337b9728968ed462c6d2b523
+Source-MD5: a469657747cba95d4a174af7c15c58b6
 SourceDirectory: %n-ppl
-PatchFile: %n.patch
-PatchFile-MD5: de6501787e5932ee288745982959652d
-PatchScript: 
-patch -p1  %{PatchFile}
-./autogen.sh
-
 Distribution: 10.5, 10.6
-ConfigureParams: --prefix=%p --mandir=%p/share/man --with-ppl=%p
+ConfigureParams: --prefix=%p --mandir=%p/share/man --infodir=%p/share/info 
--with-ppl=%p
 InstallScript: 
  make install DESTDIR=%d 
  rm -fr %i/share/info
@@ -28,6 +22,7 @@
 %p/lib/libcloog.0.dylib 1.0.0 %n (= 0.15.0-1)
   
 
+InfoDocs: cloog.info
 License: GPL
 Description: The Chunky Loop Generator
 DescDetail: 


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[cvs] dists/10.4/unstable/main/finkinfo/devel cloog.info,1.5,1.6

2009-04-06 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/devel
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv5381

Modified Files:
cloog.info 
Log Message:
work around broken cloog info file

Index: cloog.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/devel/cloog.info,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -d -r1.5 -r1.6
--- cloog.info  6 Apr 2009 13:25:19 -   1.5
+++ cloog.info  6 Apr 2009 14:32:13 -   1.6
@@ -22,7 +22,7 @@
 %p/lib/libcloog.0.dylib 1.0.0 %n (= 0.15.0-1)
   
 
-InfoDocs: cloog.info
+#InfoDocs: cloog.info
 License: GPL
 Description: The Chunky Loop Generator
 DescDetail: 


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[cvs] dists/10.4/unstable/main/finkinfo/languages gcc44.info,1.3,1.4

2009-04-08 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv32162

Modified Files:
gcc44.info 
Log Message:
update xcode for gcc44

Index: gcc44.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages/gcc44.info,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- gcc44.info  6 Apr 2009 18:55:04 -   1.3
+++ gcc44.info  8 Apr 2009 21:21:46 -   1.4
@@ -15,8 +15,8 @@
 NoSetLDFLAGS: True
 Conflicts: gcc4, gcc42, gcc43
 Replaces: gcc4, gcc42, gcc43
-Depends: gmp-shlibs (= 4.2.4-1000), libgmpxx-shlibs (= 4.2.4-1000), 
libmpfr1-shlibs (= 2.3.2-1), %N-shlibs (= %v-%r), libiconv, 
libgettext3-shlibs, ppl-shlibs (= 0.10-1), cloog-shlibs (= 0.15-1), xcode (= 
2.5)
-BuildDepends: gmp (= 4.2.4-1000), libmpfr1 (= 2.3.2-1), libiconv-dev, 
gettext-tools, libgettext3-dev, ppl (= 0.10-1), cloog (= 0.15-1), xcode (= 
2.5), fink (= 0.24.12)
+Depends: gmp-shlibs (= 4.2.4-1000), libgmpxx-shlibs (= 4.2.4-1000), 
libmpfr1-shlibs (= 2.3.2-1), %N-shlibs (= %v-%r), libiconv, 
libgettext3-shlibs, ppl-shlibs (= 0.10-1), cloog-shlibs (= 0.15-1), xcode (= 
3.1.2)
+BuildDepends: gmp (= 4.2.4-1000), libmpfr1 (= 2.3.2-1), libiconv-dev, 
gettext-tools, libgettext3-dev, ppl (= 0.10-1), cloog (= 0.15-1), xcode (= 
3.1.2), fink (= 0.24.12)
 ConfigureParams: 
  --prefix=%p/lib/gcc4.4 --mandir=%p/share/man --infodir=%p/share/info 
--enable-languages=c,c++,fortran,objc,java \
  --with-gmp=%p  --with-libiconv-prefix=%p --with-ppl=%p --with-cloog=%p 
--with-system-zlib --x-includes=/usr/X11R6/include \


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[cvs] dists/10.4/unstable/main/finkinfo/languages gcc44.patch, 1.1, 1.2

2009-04-09 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv8703

Modified Files:
gcc44.patch 
Log Message:
initial x86_64 native support

Index: gcc44.patch
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages/gcc44.patch,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- gcc44.patch 28 Mar 2009 03:47:09 -  1.1
+++ gcc44.patch 10 Apr 2009 02:02:30 -  1.2
@@ -64,3 +64,41 @@
c-gimplify.o c-omp.o
  
  # Language-specific object files for C++ and Objective C++.
+--- gcc-4.4-20090407/libjava/configure.fix 2009-04-08 22:10:17.0 
-0400
 gcc-4.4-20090407/libjava/configure 2009-04-08 22:10:53.0 -0400
+@@ -27576,7 +27576,7 @@
+  m68*-*-linux*)
+ SIGNAL_HANDLER=include/dwarf2-signal.h
+ ;;
+- powerpc*-*-darwin* | i?86-*-darwin9* | x86_64-*-darwin9*)
++ powerpc*-*-darwin* | i?86-*-darwin[912]* | x86_64-*-darwin[912]*)
+ SIGNAL_HANDLER=include/darwin-signal.h
+ ;;
+  powerpc*-*-aix*)
+--- gcc-4.4-20090407/configure.fix 2009-04-08 22:12:51.0 -0400
 gcc-4.4-20090407/configure 2009-04-08 22:13:21.0 -0400
+@@ -2215,7 +2215,7 @@
+ noconfigdirs=$noconfigdirs ld gas gdb gprof
+ noconfigdirs=$noconfigdirs sim target-rda
+ ;;
+-  i[3456789]86-*-darwin* | x86_64-*-darwin9*)
++  i[3456789]86-*-darwin* | x86_64-*-darwin[921]*)
+ noconfigdirs=$noconfigdirs ld gas gprof
+ noconfigdirs=$noconfigdirs sim target-rda
+ ;;
+--- gcc-4.4-20090407/libjava/configure.host.fix2009-04-08 
22:33:36.0 -0400
 gcc-4.4-20090407/libjava/configure.host2009-04-08 22:34:17.0 
-0400
+@@ -295,11 +295,11 @@
+   slow_pthread_self=
+   can_unwind_signal=no
+   ;;
+-  i?86-*-darwin9*)
++  i?86-*-darwin[912]*)
+   can_unwind_signal=yes
+   DIVIDESPEC=-f%{m32:no-}%{!m32:%{!m64:no-}}%{m64:}use-divide-subroutine
+ ;;
+-  x86_64-*-darwin9*)
++  x86_64-*-darwin[912]*)
+   enable_hash_synchronization_default=yes
+   slow_pthread_self=
+   can_unwind_signal=yes


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[cvs] dists/10.4/unstable/main/finkinfo/languages gcc44.info,1.4,1.5

2009-04-09 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv8755

Modified Files:
gcc44.info 
Log Message:
initial x86_64 native support

Index: gcc44.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages/gcc44.info,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -d -r1.4 -r1.5
--- gcc44.info  8 Apr 2009 21:21:46 -   1.4
+++ gcc44.info  10 Apr 2009 02:02:57 -  1.5
@@ -1,22 +1,22 @@
 Info2: 
 Package: gcc44
 Version: 4.3.999
-Revision: 20090327
+Revision: 20090407
 Source: ftp://gcc.gnu.org/pub/gcc/snapshots/4.4-%r/gcc-4.4-%r.tar.bz2
-Source-MD5: 09193d80306e0ec89af567b630adac5a
+Source-MD5: fb1a1f98092d34cfcfb2cc00de07723c
 Source2: ftp://sourceware.org/pub/java/ecj-latest.jar
 Source2-MD5: fd299f26c02268878b5d6c0e86f57c43
 PatchFile: %n.patch
-PatchFile-MD5: e90c0beac7dc5c00a06f930c78616dfe
+PatchFile-MD5: 6f197d1d80ae3db86d292f76d76db583
 Distribution: 10.5, 10.6
-Architecture: ( %type_raw[-64bit] = -64bit ) powerpc, ( %type_raw[-64bit] = 
-64bit ) i386
-Type: -64bit
+Type: -64bit (boolean)
+Architecture: ( %type_raw[-64bit] = -64bit ) powerpc, ( %type_raw[-64bit] = 
-64bit ) i386, ( %type_raw[-64bit] = . ) x86_64
 NoSetCPPFLAGS: True
 NoSetLDFLAGS: True
 Conflicts: gcc4, gcc42, gcc43
 Replaces: gcc4, gcc42, gcc43
 Depends: gmp-shlibs (= 4.2.4-1000), libgmpxx-shlibs (= 4.2.4-1000), 
libmpfr1-shlibs (= 2.3.2-1), %N-shlibs (= %v-%r), libiconv, 
libgettext3-shlibs, ppl-shlibs (= 0.10-1), cloog-shlibs (= 0.15-1), xcode (= 
3.1.2)
-BuildDepends: gmp (= 4.2.4-1000), libmpfr1 (= 2.3.2-1), libiconv-dev, 
gettext-tools, libgettext3-dev, ppl (= 0.10-1), cloog (= 0.15-1), xcode (= 
3.1.2), fink (= 0.24.12)
+BuildDepends: gmp (= 4.2.4-1000), libmpfr1 (= 2.3.2-1), libiconv-dev, 
gettext-tools, libgettext3-dev, ppl (= 0.10-1), cloog (= 0.15-1), xcode (= 
3.1.2), fink (= 0.27.2)
 ConfigureParams: 
  --prefix=%p/lib/gcc4.4 --mandir=%p/share/man --infodir=%p/share/info 
--enable-languages=c,c++,fortran,objc,java \
  --with-gmp=%p  --with-libiconv-prefix=%p --with-ppl=%p --with-cloog=%p 
--with-system-zlib --x-includes=/usr/X11R6/include \
@@ -31,8 +31,10 @@
  darwinvers=`uname -r|cut -f1 -d.`
  if [ %m = powerpc ]; then
   ../gcc-4.4-%r/configure %c --build=%m-apple-darwin${darwinvers} 
--host=%m-apple-darwin${darwinvers} --target=%m-apple-darwin${darwinvers}
- else
+ elif [ %m = i386 ]; then
   ../gcc-4.4-%r/configure %c --with-arch=nocona --with-tune=generic 
--build=i686-apple-darwin${darwinvers} --host=i686-apple-darwin${darwinvers} 
--target=i686-apple-darwin${darwinvers}
+ elif [ %m = x86_64 ]; then
+  ../gcc-4.4-%r/configure %c --build=x86_64-apple-darwin${darwinvers} 
--host=x86_64-apple-darwin${darwinvers} 
--target=x86_64-apple-darwin${darwinvers}
  fi
  num_cpu=$(echo `sysctl -n hw.ncpu`)
  make -j $num_cpu
@@ -91,31 +93,43 @@
 lib/gcc4.4/lib/libobjc-gnu.2*.dylib
 lib/gcc4.4/lib/libgomp.1*.dylib
 lib/gcc4.4/lib/gcj-4.4.0-10
-lib/gcc4.4/%lib/libgfortran.3*.dylib
-lib/gcc4.4/%lib/libffi.4*.dylib
-lib/gcc4.4/%lib/libstdc++.6*.dylib
-lib/gcc4.4/%lib/libssp.0*.dylib
-lib/gcc4.4/%lib/libobjc-gnu.2*.dylib
-lib/gcc4.4/%lib/libgomp.1*.dylib
+(%m != x86_64) lib/gcc4.4/%lib/libgfortran.3*.dylib
+(%m = x86_64) lib/gcc4.4/lib/i386/libgfortran.3*.dylib
+(%m != x86_64) lib/gcc4.4/%lib/libffi.4*.dylib
+(%m = x86_64) lib/gcc4.4/lib/i386/libffi.4*.dylib
+(%m != x86_64) lib/gcc4.4/%lib/libstdc++.6*.dylib
+(%m = x86_64) lib/gcc4.4/lib/i386/libstdc++.6*.dylib
+(%m != x86_64) lib/gcc4.4/%lib/libssp.0*.dylib
+(%m = x86_64) lib/gcc4.4/lib/i386/libssp.0*.dylib
+(%m != x86_64) lib/gcc4.4/%lib/libobjc-gnu.2*.dylib
+(%m = x86_64) lib/gcc4.4/lib/i386/libobjc-gnu.2*.dylib
+(%m != x86_64) lib/gcc4.4/%lib/libgomp.1*.dylib
+(%m = x86_64) lib/gcc4.4/lib/i386/libgomp.1*.dylib
   
   Shlibs: 
-%p/lib/gcc4.4/lib/libgfortran.3.dylib 4.0.0 %n (= 4.3-20070711) 32
-%p/lib/gcc4.4/lib/libffi.4.dylib 5.0.0 %n (= 20050130-5) 32
-%p/lib/gcc4.4/lib/libstdc++.6.dylib 7.0.0 %n (= 4.1-1) 32
-%p/lib/gcc4.4/lib/libgcc_s.1.dylib 1.0.0 %n (= 4.1-1) 32-64
-%p/lib/gcc4.4/lib/libgcj.10.dylib 11.0.0 %n (= 4.1.999-20060915) 32
-%p/lib/gcc4.4/lib/libgcj-tools.10.dylib  11.0.0 %n (= 4.1.999-20060915) 32
-%p/lib/gcc4.4/lib/libgij.10.dylib 11.0.0 %n (= 4.1.999-20060915) 32
-%p/lib/gcc4.4/lib/libssp.0.dylib 1.0.0 %n (= 4.1-1) 32
-%p/lib/gcc4.4/lib/libobjc-gnu.2.dylib 3.0.0 %n (= 20050130-5) 32
-%p/lib/gcc4.4/lib/libgomp.1.dylib 2.0.0 %n (= 2:4.1.99-20060513) 32
-%p/lib/gcc4.4/lib/gcj-4.4.0-10/libjvm.dylib 0.0.0 %n (= 4.1-1) 32
-%p/lib/gcc4.4/%lib/libgfortran.3.dylib 4.0.0 %n (= 4.3-20070711) 64
-%p/lib/gcc4.4/%lib/libffi.4.dylib 5.0.0 %n (= 20050130-5) 64
-%p/lib/gcc4.4/%lib/libstdc++.6.dylib 7.0.0 %n (= 4.1-1) 64
-%p/lib/gcc4.4/%lib/libssp.0.dylib 

[cvs] dists/10.4/unstable/main/finkinfo/devel cloog.info,1.6,1.7

2009-04-09 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/devel
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv8988

Modified Files:
cloog.info 
Log Message:
update cloog to 0.15.3 for fixed info file

Index: cloog.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/devel/cloog.info,v
retrieving revision 1.6
retrieving revision 1.7
diff -u -d -r1.6 -r1.7
--- cloog.info  6 Apr 2009 14:32:13 -   1.6
+++ cloog.info  10 Apr 2009 02:04:27 -  1.7
@@ -1,17 +1,16 @@
 Package: cloog
-Version: 0.15.2
+Version: 0.15.3
 Revision: 1
 BuildDepends: ppl (= 0.10-1), gmp (= 4.2.4-1000), libtool14, fink (= 
0.24.12)
 BuildDependsOnly: True
 Depends: %N-shlibs (= %v-%r), ppl-shlibs (= 0.10-1), gmp-shlibs (= 
4.2.4-1000)
 Source: ftp://gcc.gnu.org/pub/gcc/infrastructure/%N-ppl-%v.tar.gz
-Source-MD5: a469657747cba95d4a174af7c15c58b6
+Source-MD5: 9e7a3ff38b3877625d46badc6d4bbef9
 SourceDirectory: %n-ppl
 Distribution: 10.5, 10.6
 ConfigureParams: --prefix=%p --mandir=%p/share/man --infodir=%p/share/info 
--with-ppl=%p
 InstallScript: 
  make install DESTDIR=%d 
- rm -fr %i/share/info
 
 SplitOff: 
   Package: %N-shlibs
@@ -22,7 +21,7 @@
 %p/lib/libcloog.0.dylib 1.0.0 %n (= 0.15.0-1)
   
 
-#InfoDocs: cloog.info
+InfoDocs: cloog.info
 License: GPL
 Description: The Chunky Loop Generator
 DescDetail: 


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[cvs] dists/10.4/unstable/main/finkinfo/x11 pmw-py.info,1.9,1.10

2009-04-09 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv23782

Modified Files:
pmw-py.info 
Log Message:
update pmw-py to 1.3.2 to add python 2.6 support

Index: pmw-py.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11/pmw-py.info,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -d -r1.9 -r1.10
--- pmw-py.info 19 Jul 2008 16:36:13 -  1.9
+++ pmw-py.info 10 Apr 2009 03:28:52 -  1.10
@@ -1,13 +1,13 @@
 Info2: 
 
 Package: pmw-py%type_pkg[python]
-Version: 1.2
-Revision: 1002
+Version: 1.3.2
+Revision: 1000
 Distribution: (%type_pkg[python] = 23) 10.3, (%type_pkg[python] = 23) 10.4
-Type: python (2.3 2.4 2.5)
+Type: python (2.3 2.4 2.5 2.6)
 Source: mirror:sourceforge:pmw/Pmw.%v.tar.gz
-Source-MD5: 75c49c30595217c8d9376c36aa5426aa
-SourceDirectory: Pmw
+Source-MD5: 7f30886fe9885ab3cf85dac6ce1fbda5
+SourceDirectory: Pmw.%v/src/Pmw
 BuildDepends: fink (= 0.24.12-1)
 Depends: python%type_pkg[python]
 PatchFile: %{ni}.patch


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[cvs] dists/10.4/unstable/main/finkinfo/languages gcc44-10.4.info, 1.1, 1.2

2009-04-10 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv9896

Modified Files:
gcc44-10.4.info 
Log Message:
update MD5 for patch

Index: gcc44-10.4.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages/gcc44-10.4.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- gcc44-10.4.info 28 Mar 2009 20:58:18 -  1.1
+++ gcc44-10.4.info 10 Apr 2009 14:08:47 -  1.2
@@ -7,7 +7,7 @@
 Source2: ftp://sourceware.org/pub/java/ecj-latest.jar
 Source2-MD5: fd299f26c02268878b5d6c0e86f57c43
 PatchFile: %n.patch
-PatchFile-MD5: e90c0beac7dc5c00a06f930c78616dfe
+PatchFile-MD5: 6f197d1d80ae3db86d292f76d76db583
 Distribution: 10.4
 Type: -64bit
 NoSetCPPFLAGS: True


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[cvs] dists/10.4/unstable/main/finkinfo/languages python26.info, 1.3, 1.4

2009-04-10 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv22751

Modified Files:
python26.info 
Log Message:
add support for x86_64 builds

Index: python26.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages/python26.info,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- python26.info   17 Mar 2009 15:53:10 -  1.3
+++ python26.info   10 Apr 2009 15:40:09 -  1.4
@@ -44,6 +44,16 @@
 SetLDFLAGS: -L%p/lib/system-openssl/lib
 ConfigureParams: --enable-shared
 #GCC: 4.0
+CompileScript: 
+#!/bin/sh -ex
+   if [ %m = x86_64 ]; then
+   perl -pi.bak -e 's|num_missing != 5:|num_missing != 7:|g' 
./setup.py
+   ./configure %c --disable-toolbox-glue
+   else
+   ./configure %c
+   fi
+   make
+
 InstallScript: 
 #!/bin/sh -ex
make install DESTDIR=%d


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[cvs] dists/10.4/unstable/main/finkinfo/x11 blt.patch,1.2,1.3

2009-04-10 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv24897

Modified Files:
blt.patch 
Log Message:
add fedora blt2.4z-patch-64 patch

Index: blt.patch
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11/blt.patch,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -d -r1.2 -r1.3
--- blt.patch   28 Aug 2008 02:44:35 -  1.2
+++ blt.patch   10 Apr 2009 15:57:51 -  1.3
@@ -159,3 +159,28 @@
$(INSTALL) -m 0755 bltwish$(version) $(INSTALL_ROOT)$(bindir)
$(INSTALL) -m 0755 bltsh$(version) $(INSTALL_ROOT)$(bindir)
  
+diff -r -u blt2.4z.orig/src/bltTree.c blt2.4z/src/bltTree.c
+--- blt2.4z.orig/src/bltTree.c 2002-09-29 07:44:12.0 +0200
 blt2.4z/src/bltTree.c  2004-11-05 12:27:45.797366712 +0100
+@@ -95,17 +95,16 @@
+  */
+ 
+ #define REBUILD_MULTIPLIER3
++#define START_LOGSIZE 5 /* Initial hash table size is 32. */
++#define MAX_LIST_VALUES   20 /* Convert to hash table when node
++  * value list gets bigger than this
++  * many values. */
+ 
+ #if (SIZEOF_VOID_P == 8)
+ #define RANDOM_INDEX(i)   HashOneWord(mask, downshift, i)
+ #define BITSPERWORD   64
+ #else 
+ 
+-#define START_LOGSIZE 5 /* Initial hash table size is 32. */
+-#define MAX_LIST_VALUES   20 /* Convert to hash table when node
+-  * value list gets bigger than this
+-  * many values. */
+-
+ /*
+  * The following macro takes a preliminary integer hash value and
+  * produces an index into a hash tables bucket list.  The idea is


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[cvs] dists/10.4/unstable/main/finkinfo/x11 blt.info,1.5,1.6

2009-04-10 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv25012

Modified Files:
blt.info 
Log Message:
add fedora blt2.4z-patch-64 patch

Index: blt.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11/blt.info,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -d -r1.5 -r1.6
--- blt.info28 Aug 2008 04:13:58 -  1.5
+++ blt.info10 Apr 2009 15:58:23 -  1.6
@@ -18,7 +18,7 @@
 Source-MD5: aa2ed73080f3005d9c2a3b5e57ab1eff
 SourceDirectory: %N%v
 PatchFile: %n.patch
-PatchFile-MD5: d9fa268dd2532329755d57430168ac9f
+PatchFile-MD5: 1a04682783805df368c4e261021e2ed1 
 SetCFLAGS: -O3 -fno-common
 NoSetMAKEFLAGS: true
 SetMAKEFLAGS: -j1
@@ -73,6 +73,8 @@
 
Rename a manpage that collides with one in tcltk (had been
not installed in blt/blt-man until 2.4z-15)
+
+   Add blt2.4z-patch-64 from Fedora blt rpm for x86_64 build
 
 License: BSD
 Homepage: http://sourceforge.net/projects/blt


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[cvs] dists/10.4/unstable/main/finkinfo/languages python25.info, 1.12, 1.13

2009-04-10 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv14989

Modified Files:
python25.info 
Log Message:
allow builds on x86_64

Index: python25.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages/python25.info,v
retrieving revision 1.12
retrieving revision 1.13
diff -u -d -r1.12 -r1.13
--- python25.info   17 Mar 2009 07:04:13 -  1.12
+++ python25.info   10 Apr 2009 22:32:48 -  1.13
@@ -57,6 +57,16 @@
 SetLDFLAGS: -L%p/lib/system-openssl/lib
 ConfigureParams: --mandir=%p/share/man
 GCC: 4.0
+CompileScript: 
+#!/bin/sh -ex
+if [ %m = x86_64 ]; then
+perl -pi.bak -e 's|num_missing != 5:|num_missing != 7:|g' 
./setup.py
+./configure %c --disable-toolbox-glue
+else
+./configure %c
+fi
+make
+
 InstallScript: 
 #!/bin/sh -ex
make install DESTDIR=%d


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[cvs] dists/10.4/unstable/main/finkinfo/sound cdparanoia.info, 1.3, 1.4

2009-04-10 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sound
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv12131

Modified Files:
cdparanoia.info 
Log Message:
use MacOSX10.5.sdk on SL

Index: cdparanoia.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sound/cdparanoia.info,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- cdparanoia.info 14 Jul 2006 20:50:36 -  1.3
+++ cdparanoia.info 11 Apr 2009 02:40:06 -  1.4
@@ -1,12 +1,12 @@
 Package: cdparanoia
 Version: 3a9.8
-Revision: 11
+Revision: 12
 Source: http://www.buserror.net/cdparanoia/%n-osx-5.tar.gz
 SourceDirectory: %n-osx-5
 Source-MD5: 26c82a4841567087b79318e1f72afc2e
 NoSetMAKEFLAGS: true
 SetMAKEFLAGS: -j1
-ConfigureParams: --mandir=%i/share/man
+ConfigureParams: --mandir=%i/share/man 
 Depends: libcdparanoia0-shlibs
 DocFiles: FAQ.txt README GPL README.OSX
 Description: Audio extraction tool for sampling CDs
@@ -17,7 +17,9 @@
 
 CompileScript: 
 #!/bin/sh -ev
-
+case `uname -r` in
+10.*) perl -pi -e 's|-O20 -fsigned-char|-O20 -fsigned-char 
-isysroot /Developer/SDKs/MacOSX10.5.sdk -mmacosx-version-min=10.5|g' configure
+esac
./configure %c
DISTCC_HOSTS='' MAKEFLAGS='-j1' make
 


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[cvs] dists/10.4/unstable/main/finkinfo/languages tkimg.info,1.2,1.3

2009-04-11 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv32720

Modified Files:
tkimg.info 
Log Message:
don't build ppc code on x86_64

Index: tkimg.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages/tkimg.info,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -d -r1.2 -r1.3
--- tkimg.info  17 Dec 2008 17:05:03 -  1.2
+++ tkimg.info  11 Apr 2009 16:13:00 -  1.3
@@ -18,6 +18,8 @@
 #!/bin/zsh -ev
 if [ %m = i386 ]; then
   find . -name configure | xargs perl  -pi -e 's/-arch ppc/-arch i386/g'
+elif [ %m = x86_64 ]; then
+  find . -name configure | xargs perl  -pi -e 's/-arch ppc/-arch x86_64/g'
 fi
 ./configure --prefix=%i --exec-prefix=%i --mandir=%p/share/man 
--infodir=%p/share/info --with-tcl=%p/lib --with-tk=%p/lib
 make


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[cvs] dists/10.4/unstable/main/finkinfo/sci ccpnmr-py.info,1.17,1.18

2009-04-11 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv22966

Modified Files:
ccpnmr-py.info 
Log Message:
assume ownership and update to 2.0.7

Index: ccpnmr-py.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/ccpnmr-py.info,v
retrieving revision 1.17
retrieving revision 1.18
diff -u -d -r1.17 -r1.18
--- ccpnmr-py.info  31 Jan 2009 23:58:15 -  1.17
+++ ccpnmr-py.info  11 Apr 2009 18:57:40 -  1.18
@@ -1,14 +1,14 @@
 Info2: 
 Package: ccpnmr-py%type_pkg[python]
-Version: 1.0.15
-Revision: 4
+Version: 2.0.7
+Revision: 1
 
 Distribution: (%type_pkg[python] = 23) 10.4
-Type: python (2.3 2.4 2.5)
+Type: python (2.3 2.4 2.5 2.6)
 
-Maintainer: Murali Vadivelu murali1...@users.sf.net
+Maintainer: Jack Howarth howa...@bromo.med.uc.edu
 
-Depends: python%type_pkg[python], x11, tcltk, freeglut-shlibs, (%n != 
ccpnmr-py25) python%type_pkg[python]-socket-ssl | (%n != ccpnmr-py25) 
python%type_pkg[python]-socket
+Depends: python%type_pkg[python], x11, tcltk, freeglut-shlibs, (%n != 
ccpnmr-py25) python%type_pkg[python]-socket-ssl | (%n != ccpnmr-py25) 
python%type_pkg[python]-socket, scipy-core-py%type_pkg[python]
 BuildDepends: x11-dev, tcltk-dev, freeglut, fink (= 0.24.12)
 Recommends: ccpnmr-py%type_pkg[python]-bin
 Conflicts: ccpnmr-opengl-py%type_pkg[python], ccpnmr-mesa-py%type_pkg[python], 
ccpnmr-py23, ccpnmr-py24, ccpnmr-py25, ccpnmr-py23-bin, ccpnmr-py24-bin, 
ccpnmr-py25-bin
@@ -18,12 +18,12 @@
 Homepage: http://www.ccpn.ac.uk/ccpn_suite/ccpn_suite.html
 License: LGPL
 
-Source: ftp://www.bio.cam.ac.uk/pub/ccpnmr/analysis%v.tar.gz
+Source: http://www.bio.cam.ac.uk/ccpn/download/ccpnmr/analysis%v.tar.gz
 SourceDirectory: ccpnmr
-Source-MD5: b713a3ecec90fc74e730eb2db04191b4
+Source-MD5: 524893980bb656efacdbd3f8a6dece54
 
 PatchFile: ccpnmr-py.patch
-PatchFile-MD5: 7673e39cc68ebd964401461e18ca9b1b
+PatchFile-MD5: 352350560465226de2415eaf85243eb3
 PatchScript: sed 's,@PREFIX@,%p,g'  %{PatchFile} | sed 
's,python2.X,python%type_raw[python],g' | patch -p1
 
 CompileScript: 
@@ -31,11 +31,11 @@
 
 export CCPNMR_TOP_DIR=%b
 
-cd $CCPNMR_TOP_DIR/ccpnmr1.0/c
+cd $CCPNMR_TOP_DIR/ccpnmr2.0/c
 
 cp environment-opengl.txt environment.txt
 
-if [ %m = i386 ]; then 
+if [ %m != powerpc ]; then 
 perl -pi -e 's,-mtune=970\s-maltivec,,g' environment.txt
 fi
 
@@ -48,24 +48,24 @@
 
 chmod 755 %i/lib/ccpnmr-py%type_pkg[python]/bin/*
 
-mkdir -p %i/lib/python%type_raw[python]/site-packages/ccpnmr/ccpnmr1.0
-cp -r %b/ccpnmr1.0/c 
%i/lib/python%type_raw[python]/site-packages/ccpnmr/ccpnmr1.0/
-cp -r %b/ccpnmr1.0/python 
%i/lib/python%type_raw[python]/site-packages/ccpnmr/ccpnmr1.0/
-echo 'ccpnmr/ccpnmr1.0/python'  
%i/lib/python%type_raw[python]/site-packages/ccpnmr.pth
+mkdir -p %i/lib/python%type_raw[python]/site-packages/ccpnmr/ccpnmr2.0
+cp -r %b/ccpnmr2.0/c 
%i/lib/python%type_raw[python]/site-packages/ccpnmr/ccpnmr2.0/
+cp -r %b/ccpnmr2.0/python 
%i/lib/python%type_raw[python]/site-packages/ccpnmr/ccpnmr2.0/
+echo 'ccpnmr/ccpnmr2.0/python'  
%i/lib/python%type_raw[python]/site-packages/ccpnmr.pth
 
-cp -r %b/ccpnmr1.0/data 
%i/lib/python%type_raw[python]/site-packages/ccpnmr/ccpnmr1.0/
-cp -r %b/ccpnmr1.0/model 
%i/lib/python%type_raw[python]/site-packages/ccpnmr/ccpnmr1.0/
+cp -r %b/ccpnmr2.0/data 
%i/lib/python%type_raw[python]/site-packages/ccpnmr/ccpnmr2.0/
+cp -r %b/ccpnmr2.0/model 
%i/lib/python%type_raw[python]/site-packages/ccpnmr/ccpnmr2.0/
 
-cp -r %b/ccpnmr1.0/doc 
%i/lib/python%type_raw[python]/site-packages/ccpnmr/ccpnmr1.0/
+cp -r %b/ccpnmr2.0/doc 
%i/lib/python%type_raw[python]/site-packages/ccpnmr/ccpnmr2.0/
 cp -r %b/doc %i/lib/python%type_raw[python]/site-packages/ccpnmr/
 
-mkdir -p %i/lib/python%type_raw[python]/site-packages/ccpnmr/ccpnmr1.0/python/
-cp -r %b/ccpnmr1.0/python/doc 
%i/lib/python%type_raw[python]/site-packages/ccpnmr/ccpnmr1.0/python/
+mkdir -p %i/lib/python%type_raw[python]/site-packages/ccpnmr/ccpnmr2.0/python/
+cp -r %b/ccpnmr2.0/python/doc 
%i/lib/python%type_raw[python]/site-packages/ccpnmr/ccpnmr2.0/python/
 
-cd %i/lib/python%type_raw[python]/site-packages; 
%p/bin/python%type_raw[python] -O %p/lib/python%type_raw[python]/compileall.py 
ccpnmr/ccpnmr1.0
+cd %i/lib/python%type_raw[python]/site-packages; 
%p/bin/python%type_raw[python] -O %p/lib/python%type_raw[python]/compileall.py 
ccpnmr/ccpnmr2.0
 
 
-DocFiles: ccpnmr1.0/license/CCPN.license ccpnmr1.0/license/LGPL.license
+DocFiles: ccpnmr2.0/license/CCPN.license ccpnmr2.0/license/LGPL.license
 
 PostInstScript: 
 update-alternatives --install %p/bin/analysis analysis 
%p/lib/ccpnmr-py%type_pkg[python]/bin/analysis 40
@@ -75,9 +75,9 @@
 update-alternatives --install %p/bin/updateAll updateAll 
%p/lib/ccpnmr-py%type_pkg[python]/bin/updateAll 40
 update-alternatives --install %p/bin/updateCheck updateCheck 
%p/lib/ccpnmr-py%type_pkg[python]/bin/updateCheck

[cvs] dists/10.4/unstable/main/finkinfo/sci ccpnmr-py.patch,1.8,1.9

2009-04-11 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv23068

Modified Files:
ccpnmr-py.patch 
Log Message:
assume ownership and update to 2.0.7

Index: ccpnmr-py.patch
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/ccpnmr-py.patch,v
retrieving revision 1.8
retrieving revision 1.9
diff -u -d -r1.8 -r1.9
--- ccpnmr-py.patch 6 Apr 2008 04:17:21 -   1.8
+++ ccpnmr-py.patch 11 Apr 2009 18:58:32 -  1.9
@@ -10,7 +10,7 @@
 +export LIBGL_ALWAYS_INDIRECT=1
 +fi
 +
-...@prefix@/bin/python2.X -i -O 
@PREFIX@/lib/python2.X/site-packages/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/AnalysisGui.py
 $1 $2 $3 $4 $5
+...@prefix@/bin/python2.X -i -O 
@PREFIX@/lib/python2.X/site-packages/ccpnmr/ccpnmr2.0/python/ccpnmr/analysis/AnalysisGui.py
 $1 $2 $3 $4 $5
 diff -urN ccpnmr.orig/bin/formatConverter ccpnmr/bin/formatConverter
 --- ccpnmr.orig/bin/formatConverter1970-01-01 01:00:00.0 +0100
 +++ ccpnmr/bin/formatConverter 2005-12-23 20:44:06.0 +
@@ -37,9 +37,9 @@
 +fi
 +
 +...@prefix@/bin/python2.X -O 
@PREFIX@/lib/python2.X/site-packages/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/NmrPipeData.py
 $1 $2 $3
-diff -urN ccpnmr.orig/ccpnmr1.0/c/environment-opengl.txt 
ccpnmr/ccpnmr1.0/c/environment-opengl.txt
 ccpnmr.orig/ccpnmr1.0/c/environment-opengl.txt 1970-01-01 
01:00:00.0 +0100
-+++ ccpnmr/ccpnmr1.0/c/environment-opengl.txt  2005-12-23 21:37:59.0 
+
+diff -urN ccpnmr.orig/ccpnmr2.0/c/environment-opengl.txt 
ccpnmr/ccpnmr1.0/c/environment-opengl.txt
+--- ccpnmr.orig/ccpnmr2.0/c/environment-opengl.txt 1970-01-01 
01:00:00.0 +0100
 ccpnmr/ccpnmr2.0/c/environment-opengl.txt  2005-12-23 21:37:59.0 
+
 @@ -0,0 +1,44 @@
 +#Environment file for use with fink to build ccpnmr suite - environment.txt
 +
@@ -85,30 +85,9 @@
 +GL_LIB = -lfreeglut -lGLU -lGL
 +GL_INCLUDE_FLAGS = -I$(GL_DIR)/include -...@prefix@/include
 +GL_LIB_FLAGS = -L$(GL_DIR)/lib -...@prefix@/lib
-diff -urN ccpnmr.orig/ccpnmr1.0/python/ccpnmr/analysis/Util.py 
ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/Util.py
 ccpnmr.orig/ccpnmr1.0/python/ccpnmr/analysis/Util.py   2005-12-22 
15:16:50.0 +
-+++ ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/Util.py2005-12-30 
14:10:29.0 +
-@@ -73,13 +73,13 @@
- 
- graphics_handlers = []
- try:
--  import memops.c.TkHandler
--  graphics_handlers.append('Tk')
-+  import memops.c.GlHandler
-+  graphics_handlers.append('OpenGL')
- except:
-   pass
- try:
--  import memops.c.GlHandler
--  graphics_handlers.append('OpenGL')
-+  import memops.c.TkHandler
-+  graphics_handlers.append('Tk')
- except:
-   pass
- 
-diff -urN ccpnmr.orig/ccpnmr1.0/c/ccp/structure/Makefile 
ccpnmr/ccpnmr1.0/c/ccp/structure/Makefile
 ccpnmr.orig/ccpnmr1.0/c/ccp/structure/Makefile 2006-01-13 
21:52:17.0 +
-+++ ccpnmr/ccpnmr1.0/c/ccp/structure/Makefile  2006-01-13 21:56:46.0 
+
+diff -urN ccpnmr.orig/ccpnmr2.0/c/ccp/structure/Makefile 
ccpnmr/ccpnmr1.0/c/ccp/structure/Makefile
+--- ccpnmr.orig/ccpnmr2.0/c/ccp/structure/Makefile 2006-01-13 
21:52:17.0 +
 ccpnmr/ccpnmr2.0/c/ccp/structure/Makefile  2006-01-13 21:56:46.0 
+
 @@ -35,11 +35,11 @@
$(GLOBAL_DIR)/py_ps_handler.o \
$(GLOBAL_DIR)/py_tk_handler.o
@@ -124,9 +103,9 @@
  
  ALL_LIB = $(GL_LIB) $(TK_LIB) $(TCL_LIB) $(X11_LIB) $(MATH_LIB)
  
-diff -urN ccpnmr.orig/ccpnmr1.0/c/ccpnmr/analysis/Makefile 
ccpnmr/ccpnmr1.0/c/ccpnmr/analysis/Makefile
 ccpnmr.orig/ccpnmr1.0/c/ccpnmr/analysis/Makefile   2006-01-13 
21:52:45.0 +
-+++ ccpnmr/ccpnmr1.0/c/ccpnmr/analysis/Makefile2006-01-13 
21:57:29.0 +
+diff -urN ccpnmr.orig/ccpnmr2.0/c/ccpnmr/analysis/Makefile 
ccpnmr/ccpnmr1.0/c/ccpnmr/analysis/Makefile
+--- ccpnmr.orig/ccpnmr2.0/c/ccpnmr/analysis/Makefile   2006-01-13 
21:52:45.0 +
 ccpnmr/ccpnmr2.0/c/ccpnmr/analysis/Makefile2006-01-13 
21:57:29.0 +
 @@ -40,11 +40,11 @@
$(GLOBAL_DIR)/py_ps_handler.o \
$(GLOBAL_DIR)/py_tk_handler.o
@@ -142,9 +121,9 @@
  
  ALL_LIB = $(GL_LIB) $(TK_LIB) $(TCL_LIB) $(X11_LIB) $(MATH_LIB)
  
-diff -urN ccpnmr.orig/ccpnmr1.0/c/memops/global/Makefile 
ccpnmr/ccpnmr1.0/c/memops/global/Makefile
 ccpnmr.orig/ccpnmr1.0/c/memops/global/Makefile 2006-01-13 
20:57:07.0 +
-+++ ccpnmr/ccpnmr1.0/c/memops/global/Makefile  2006-01-13 20:59:57.0 
+
+diff -urN ccpnmr.orig/ccpnmr2.0/c/memops/global/Makefile 
ccpnmr/ccpnmr1.0/c/memops/global/Makefile
+--- ccpnmr.orig/ccpnmr2.0/c/memops/global/Makefile 2006-01-13 
20:57:07.0 +
 ccpnmr/ccpnmr2.0/c/memops/global/Makefile  2006-01-13 20:59:57.0 
+
 @@ -99,10 +99,10 @@
  
  TCLTK_LIB = $(TK_LIB) $(TCL_LIB) $(X11_LIB) $(MATH_LIB)
@@ -173,7 +152,7 @@
 +export 

[cvs] dists/10.4/unstable/main/finkinfo/languages ocaml.info, 1.14, 1.15

2009-04-11 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv11627

Modified Files:
ocaml.info 
Log Message:
fix bulld on x86_64 fink for SL

Index: ocaml.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages/ocaml.info,v
retrieving revision 1.14
retrieving revision 1.15
diff -u -d -r1.14 -r1.15
--- ocaml.info  31 Jan 2009 23:58:15 -  1.14
+++ ocaml.info  11 Apr 2009 21:36:42 -  1.15
@@ -23,7 +23,12 @@
  cd ..  patch -p1  %{PatchFile}
 
 CompileScript: 
+#! /bin/sh -ex
+ if [ %m = x86_64 ]; then
+ ./configure -tkdefs -I%p/include -tklibs -L%p/lib -prefix %p -mandir 
%p/share/man -cc gcc -m64 -isysroot /Developer/SDKs/MacOSX10.5.sdk 
-mmacosx-version-min=10.5
+ else
  ./configure -tkdefs -I%p/include -tklibs -L%p/lib -prefix %p -mandir 
%p/share/man
+ fi
  make world opt opt.opt
 
 InstallScript: 


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[cvs] dists/10.4/unstable/main/finkinfo/devel openmpi.info,1.11,1.12

2009-04-11 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/devel
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv25968

Modified Files:
openmpi.info 
Log Message:
add x86_64 support

Index: openmpi.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/devel/openmpi.info,v
retrieving revision 1.11
retrieving revision 1.12
diff -u -d -r1.11 -r1.12
--- openmpi.info21 Jan 2009 04:31:19 -  1.11
+++ openmpi.info11 Apr 2009 23:58:31 -  1.12
@@ -1,17 +1,17 @@
 Package: openmpi
-Version: 1.3
+Version: 1.3.1
 Revision: 1000
 GCC: 4.0
 Description: MPI implementation for parallel computing
 License: BSD
 Maintainer: Jack Howarth howa...@bromo.msbb.uc.edu
 Depends: %N-shlibs (= %v-%r)
-BuildDepends: gcc43
+BuildDepends: (%m != x86_64) gcc43, (%m = x86_64) gcc44
 BuildConflicts: lammpi ( 7.1.2-1000), lammpi-shlibs ( 7.1.2-1000), 
lammpi-dev
 Conflicts: lammpi ( 7.1.2-1000), lammpi-shlibs ( 7.1.2-1000), lammpi-dev  
( 7.1.2-1000)
-Source: http://www.open-mpi.org/software/ompi/v%v/downloads/openmpi-%v.tar.bz2
-Source-MD5: efbba7d652d1e430d456f65d7a2e339b
-ConfigureParams: --prefix=%p --libexecdir=%p/lib/%n --datadir=%p/share/doc/%n 
--sysconfdir=%p/etc/%n --sharedstatedir=%p/var/%n/shared 
--localstatedir=%p/var/%n/local --libdir=%p/lib/%n --includedir=%p/include 
--infodir=%p/share/info --mandir=%p/share/man/%n --enable-shared 
--enable-static --disable-dependency-tracking FFLAGS=-O3 --with-devel-headers
+Source: http://www.open-mpi.org/software/ompi/v1.3/downloads/openmpi-%v.tar.bz2
+Source-MD5: d759523b0752139872c534714d641d64
+ConfigureParams: --prefix=%p --libexecdir=%p/lib/%n --datadir=%p/share/doc/%n 
--sysconfdir=%p/etc/%n --sharedstatedir=%p/var/%n/shared 
--localstatedir=%p/var/%n/local --libdir=%p/lib/%n --includedir=%p/include 
--infodir=%p/share/info --mandir=%p/share/man/%n --enable-shared 
--enable-static --disable-dependency-tracking FFLAGS=-O3 --with-devel-headers 
--build=%m-apple-darwin`uname -r|cut -f1 -d.` --host=%m-apple-darwin`uname 
-r|cut -f1 -d.`
 InstallScript: 
 #!/bin/sh -ev
 make install DESTDIR=%d
@@ -35,7 +35,7 @@
 DocFiles: AUTHORS INSTALL LICENSE README VERSION
 SplitOff: 
  Package: %N-shlibs
- Depends: gcc43-shlibs
+ Depends: (%m != x86_64) gcc43-shlibs, (%m = x86_64) gcc44-shlibs
  Files: 
lib/%N/lib*.0.dylib
  


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[cvs] dists/10.4/unstable/main/finkinfo/sci gromacs.info,1.11,1.12

2009-04-11 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv26083

Modified Files:
gromacs.info 
Log Message:
add x86_64 support

Index: gromacs.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/gromacs.info,v
retrieving revision 1.11
retrieving revision 1.12
diff -u -d -r1.11 -r1.12
--- gromacs.info20 Feb 2009 03:05:39 -  1.11
+++ gromacs.info11 Apr 2009 23:59:45 -  1.12
@@ -22,7 +22,7 @@
 if [ `uname -p` = powerpc ]; then
 ./configure %c --enable-ppc-altivec
 else
-./configure %c
+./configure %c --build=%m-apple-darwin`uname -r|cut -f1 -d.` 
--host=%m-apple-darwin`uname -r|cut -f1 -d.`
 fi
 make 
 


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[cvs] dists/10.4/unstable/main/finkinfo/sci gromacs-mpi.info, 1.12, 1.13

2009-04-11 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv26238

Modified Files:
gromacs-mpi.info 
Log Message:
add x86_64 support

Index: gromacs-mpi.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/gromacs-mpi.info,v
retrieving revision 1.12
retrieving revision 1.13
diff -u -d -r1.12 -r1.13
--- gromacs-mpi.info20 Feb 2009 03:06:06 -  1.12
+++ gromacs-mpi.info12 Apr 2009 00:00:11 -  1.13
@@ -23,7 +23,7 @@
   if [ `uname -p` = powerpc ]; then
 ./configure %c --enable-ppc-altivec
   else
-./configure %c
+./configure %c --build=%m-apple-darwin`uname -r|cut -f1 -d.` 
--host=%m-apple-darwin`uname -r|cut -f1 -d.`
   fi
   make mdrun
 


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[cvs] dists/10.4/unstable/main/finkinfo/sci fftw3-x86_64.info, NONE, 1.1

2009-04-11 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv32099

Added Files:
fftw3-x86_64.info 
Log Message:
add fftw3 based on 3.2.1 for x86_64 fink

--- NEW FILE: fftw3-x86_64.info ---
Package: fftw3
Version: 3.2.1
Revision: 1
Maintainer: Sebastien Maret bma...@users.sourceforge.net
Source:  ftp://ftp.fftw.org/pub/fftw/fftw-%v.tar.gz
Source-MD5: 712d3f33625a0a76f5758648d4b925f7
BuildDepends:  fink (= 0.24.12-1), (%m != x86_64) gcc43, (%m = x86_64) gcc44, 
ocaml
Depends: %N-shlibs (= %v-%r), (%m != x86_64) gcc43-shlibs, (%m = x86_64) 
gcc44-shlibs
BuildDependsOnly: True
Architecture: x86_64
License: GPL
PatchFile: %n-x86_64.patch
PatchFile-MD5: 9d79b2581d6a32989c93ff7a78b7e6a0 
ConfigureParams: --enable-shared --enable-threads --enable-fortran 
--mandir='${prefix}/share/man' --infodir='${prefix}/share/info'
GCC: 4.0
CompileScript: 
 #!/bin/sh -ev
 gcclib=`%p/bin/gfortran --print-lib`
 FLIBDIR=`dirname $gcclib`
 if [ %m != powerpc ]; then 
 FC=%p/bin/gfortran FLIBS=-L${FLIBDIR} ./configure %c --without-gcc-arch
 else
 FC=%p/bin/gfortran FLIBS=-L${FLIBDIR} ./configure %c
 fi
 make

InstallScript: 
 #!/bin/sh -ev
 make -j1 install prefix=%i
 mkdir -p %i/share/doc/%n/html/FAQ
 cp doc/html/*html %i/share/doc/%n/html
 cp doc/FAQ/fftw-faq.html/*html %i/share/doc/%n/html/FAQ
 make clean
 if [ %m != powerpc ]; then 
 ./configure %c --enable-float --without-gcc-arch
 else
 ./configure %c --enable-float --enable-altivec
 fi
 make
 make -j1 install prefix=%i 

SplitOff: 
  Package: %N-shlibs
  Files: lib/libfftw3.*.dylib lib/libfftw3_threads.*.dylib 
lib/libfftw3f.*.dylib lib/libfftw3f_threads.*.dylib
  Shlibs: 
   %p/lib/libfftw3.3.dylib 6.0.0 %n (= 3.0-1)
   %p/lib/libfftw3_threads.3.dylib 6.0.0 %n (= 3.0-1)
   %p/lib/libfftw3f.3.dylib 6.0.0 %n (= 3.0-1)
   %p/lib/libfftw3f_threads.3.dylib 6.0.0 %n (= 3.0-1)
  
  DocFiles: README NEWS TODO COPYING INSTALL COPYRIGHT AUTHORS CONVENTIONS

DocFiles: README NEWS TODO COPYING INSTALL COPYRIGHT AUTHORS CONVENTIONS
InfoDocs: fftw3.info
Description: Discrete Fourier Transform Lib (Ver 3)
DescDetail: 
 Performs the DFT in one or more dimensions, of both real and complex data, 
 for arbitrary input size. 

 Version 3 API is incompatible with Version 2 API (provided by fftw package)

 Single and double precision libs built, single precision libs 
 have altivec support.

DescPackaging: 
Originally packaged by Jeffrey Whitaker.

Homepage: http://www.fftw.org


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[cvs] dists/10.4/unstable/main/finkinfo/sci fftw3-x86_64.patch, NONE, 1.1

2009-04-11 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv32217

Added Files:
fftw3-x86_64.patch 
Log Message:
add fftw3 based on 3.2.1 for x86_64 fink

--- NEW FILE: fftw3-x86_64.patch ---
--- fftw-3.2.1/tests/Makefile.in.orig   2009-02-09 19:50:28.0 -0500
+++ fftw-3.2.1/tests/Makefile.in2009-04-11 17:47:34.0 -0400
@@ -232,9 +232,9 @@
 @COMBINED_THREADS_FALSE@@smp_t...@libfftwthreads = 
$(top_builddir)/threads/libff...@prec_suffix@_threads.la
 @smp_fa...@libfftwthreads = 
 bench_SOURCES = bench.c hook.c fftw-bench.c fftw-bench.h
-bench_LDADD = $(LIBFFTWTHREADS)\
+bench_LDADD = $(top_builddir)/libbench2/libbench2.a $(LIBFFTWTHREADS)  
\
 $(top_builddir)/libff...@prec_suffix@.la   \
-$(top_builddir)/libbench2/libbench2.a $(THREADLIBS)
+$(THREADLIBS)
 
 all: all-am
 
--- fftw-3.2.1/tools/Makefile.in.orig   2009-02-09 19:50:28.0 -0500
+++ fftw-3.2.1/tools/Makefile.in2009-04-11 17:50:17.0 -0400
@@ -246,10 +246,10 @@
 @COMBINED_THREADS_FALSE@@smp_t...@libfftwthreads = 
$(top_builddir)/threads/libff...@prec_suffix@_threads.la
 @smp_fa...@libfftwthreads = 
 f...@prec_suffix@_wisdom_SOURCES = fftw-wisdom.c
-f...@prec_suffix@_wisdom_LDADD = $(top_builddir)/tests/bench.o \
+f...@prec_suffix@_wisdom_LDADD = $(top_builddir)/tests/bench.o 
$(top_builddir)/libbench2/libbench2.a   \
 $(top_builddir)/tests/fftw-bench.o $(LIBFFTWTHREADS)   \
 $(top_builddir)/libff...@prec_suffix@.la   \
-$(top_builddir)/libbench2/libbench2.a $(THREADLIBS)
+$(THREADLIBS)
 
 all: $(BUILT_SOURCES)
$(MAKE) $(AM_MAKEFLAGS) all-am


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[cvs] dists/10.4/unstable/main/finkinfo/sci fftw.info,1.17,1.18

2009-04-11 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv537

Modified Files:
fftw.info 
Log Message:
add support for x86_64 fink

Index: fftw.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/fftw.info,v
retrieving revision 1.17
retrieving revision 1.18
diff -u -d -r1.17 -r1.18
--- fftw.info   12 Jan 2009 05:05:48 -  1.17
+++ fftw.info   12 Apr 2009 00:55:00 -  1.18
@@ -6,9 +6,9 @@
 Maintainer: Sebastien Maret bma...@users.sourceforge.net
 Source:  ftp://ftp.fftw.org/pub/%n/old/fftw-%v.tar.gz
 Source-MD5: 8d16a84f3ca02a785ef9eb36249ba433
-BuildDepends: gcc43 , (%type_raw[-mpi] = -mpi) openmpi-dev, fink (= 0.27.2)
+BuildDepends: (%m != x86_64) gcc43, (%m = x86_64) gcc44, (%type_raw[-mpi] = 
-mpi) openmpi-dev, fink (= 0.27.2)
 BuildConflicts: (%type_raw[-mpi] = .) openmpi-dev, lammpi-dev
-Depends: %N-shlibs (= %v-%r), gcc43-shlibs, (%type_raw[-mpi] = -mpi) openmpi, 
(%type_raw[-mpi] = -mpi) openmpi-shlibs
+Depends: %N-shlibs (= %v-%r), (%m != x86_64) gcc43-shlibs, (%m = x86_64) 
gcc44-shlibs, (%type_raw[-mpi] = -mpi) openmpi, (%type_raw[-mpi] = -mpi) 
openmpi-shlibs
 BuildDependsOnly: True
 PatchFile: fftw.patch
 PatchFile-MD5: 4e60cf62cfd5f5702f963e8fdac2f680
@@ -26,12 +26,16 @@
  if [ %type_raw[-mpi] == -mpi ]; then
  if [ %m = i386 ]; then
  F77=%p/bin/gfortran FLIBS=-L%p/lib/gcc4.3/lib -lgfortran ./configure %c 
--without-gcc-arch --enable-mpi
+ elif [ %m = x86_64 ]; then
+ F77=%p/bin/gfortran FLIBS=-L%p/lib/gcc4.4/lib -lgfortran ./configure %c 
--without-gcc-arch --enable-mpi
  else
  F77=%p/bin/gfortran FLIBS=-L%p/lib/gcc4.3/lib -lgfortran ./configure %c 
--enable-mpi
  fi
  else
  if [ %m = i386 ]; then 
  F77=%p/bin/gfortran FLIBS=-L%p/lib/gcc4.3/lib -lgfortran ./configure %c 
--without-gcc-arch 
+ elif [ %m = x86_64 ]; then
+ F77=%p/bin/gfortran FLIBS=-L%p/lib/gcc4.4/lib -lgfortran ./configure %c 
--without-gcc-arch
  else
  F77=%p/bin/gfortran FLIBS=-L%p/lib/gcc4.3/lib -lgfortran ./configure %c 
  fi
@@ -41,12 +45,16 @@
  if [ %type_raw[-mpi] == -mpi ]; then
  if [ %m = i386 ]; then 
  F77=%p/bin/gfortran FLIBS=-L%p/lib/gcc4.3/lib -lgfortran ./configure %c 
--without-gcc-arch --enable-mpi --enable-float
+ elif [ %m = x86_64 ]; then
+ F77=%p/bin/gfortran FLIBS=-L%p/lib/gcc4.4/lib -lgfortran ./configure %c 
--without-gcc-arch --enable-mpi --enable-float
  else
  F77=%p/bin/gfortran FLIBS=-L%p/lib/gcc4.3/lib -lgfortran ./configure %c 
--enable-float --enable-altivec --enable-mpi
  fi
  else
  if [ %m = i386 ]; then 
  F77=%p/bin/gfortran FLIBS=-L%p/lib/gcc4.3/lib -lgfortran ./configure %c 
--without-gcc-arch --enable-float
+ elif [ %m = x86_64 ]; then
+ F77=%p/bin/gfortran FLIBS=-L%p/lib/gcc4.4/lib -lgfortran ./configure %c 
--without-gcc-arch --enable-float
  else
  F77=%p/bin/gfortran FLIBS=-L%p/lib/gcc4.3/lib -lgfortran ./configure %c 
--enable-float --enable-altivec 
  fi


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[cvs] dists/10.4/unstable/main/finkinfo/sci hdf5.info,1.20,1.21

2009-04-12 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv32612

Modified Files:
hdf5.info 
Log Message:
fix build for x86_64 fink

Index: hdf5.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/hdf5.info,v
retrieving revision 1.20
retrieving revision 1.21
diff -u -d -r1.20 -r1.21
--- hdf5.info   28 Jan 2009 20:10:39 -  1.20
+++ hdf5.info   13 Apr 2009 00:14:43 -  1.21
@@ -13,7 +13,7 @@
 It will only work with gfortran.
 
 Depends: %N-shlibs (= %v-%r), %N-bin, szip-shlibs (= 2.0-2)
-BuildDepends: szip (= 2.0-2), gcc43, fink ( = 0.24.12)
+BuildDepends: szip (= 2.0-2), (%m != x86_64) gcc43, (%m = x86_64) gcc44, fink 
( = 0.24.12)
 Conflicts: hdf5-18
 Replaces: hdf5-18
 GCC: 4.0
@@ -23,12 +23,14 @@
  perl -pi -e 's/hardcode_direct=yes/hardcode_direct=no/g' configure
  cp config/powerpc-apple config/i686-apple
  cp fortran/config/powerpc-apple fortran/config/i686-apple
+ cp config/powerpc-apple config/x86_64-apple
+ cp fortran/config/powerpc-apple fortran/config/x86_64-apple
  # obsolete use of sort
  perl -pi -e 's,sort \+2,sort -k 2,' bin/ltmain.sh 
 
 PatchFile: %n.patch
 PatchFile-MD5:  a756f9c68a5224dcaeb5a82d1b22362c
-ConfigureParams: --enable-cxx --without-ssl --with-zlib  --without-mpe 
--without-pablo --with-szlib --without-gass --without-srb --without-pthread  
--enable-fortran --disable-parallel --disable-dependency-tracking
+ConfigureParams: --enable-cxx --without-ssl --with-zlib  --without-mpe 
--without-pablo --with-szlib --without-gass --without-srb --without-pthread  
--enable-fortran --disable-parallel --disable-dependency-tracking 
--build=%m-apple-darwin`uname -r|cut -f1 -d.` --host=%m-apple-darwin`uname 
-r|cut -f1 -d.`
 License: OSI-Approved
 CompileScript: 
   #!/bin/sh -ev
@@ -42,7 +44,7 @@
 SplitOff: 
   Package: %N-shlibs
   Replaces: %N (= 1.4.2-3)
-  Depends: szip-shlibs (= 2.0-2), gcc43-shlibs
+  Depends: szip-shlibs (= 2.0-2), (%m != x86_64) gcc43-shlibs, (%m = x86_64) 
gcc44-shlibs
   Files: 
lib/libhdf5.*.dylib
lib/libhdf5_hl.*.dylib


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[cvs] dists/10.4/unstable/main/finkinfo/libs liboil-0.3.info, 1.10, 1.11

2009-04-12 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv22840

Modified Files:
liboil-0.3.info 
Log Message:
fix build on x86_64 fink

Index: liboil-0.3.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/liboil-0.3.info,v
retrieving revision 1.10
retrieving revision 1.11
diff -u -d -r1.10 -r1.11
--- liboil-0.3.info 30 Aug 2008 16:21:32 -  1.10
+++ liboil-0.3.info 13 Apr 2009 02:51:15 -  1.11
@@ -19,7 +19,7 @@
 #!/bin/sh -ex
 
export CCACHE_DISABLE=1 CC=/usr/bin/gcc CXX=/usr/bin/g++
-   ./configure %c
+   ./configure %c --build=%m-apple-darwin`uname -r|cut -f1 -d.` 
--host=%m-apple-darwin`uname -r|cut -f1 -d.`
make
pushd testsuite
make check


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[cvs] dists/10.4/unstable/main/finkinfo/sci apbs.info,1.13,1.14

2009-04-12 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv28257

Modified Files:
apbs.info 
Log Message:
update to apbs 1.1.0 and fix for x86_64 fink

Index: apbs.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/apbs.info,v
retrieving revision 1.13
retrieving revision 1.14
diff -u -d -r1.13 -r1.14
--- apbs.info   2 May 2008 22:07:17 -   1.13
+++ apbs.info   13 Apr 2009 03:40:30 -  1.14
@@ -1,15 +1,15 @@
 Package: apbs
-Version: 1.0.0
-Revision: 2
+Version: 1.1.0
+Revision: 1
 Source: mirror:sourceforge:%n/%n-%v-source.tar.gz
 #SourceRename: %n-%v.tar.gz
-Source-MD5: dc9c383ddaf3cd022f4a09f2cb9f1795
+Source-MD5: 8b844ba848cf853da712bbbf9f2e1553
 #SourceDirectory: %n-%v
-Depends: readline-shlibs (= 4.3-1028), gnuplot (= 4.0.0-1002), pdb2pqr, 
gcc43-shlibs
-BuildDepends: gcc43
+Depends: readline-shlibs (= 4.3-1028), gnuplot (=4.2.0) | gnuplot-nox | 
gnuplot-nogtk, pdb2pqr, (%m != x86_64) gcc43-shlibs, (%m = x86_64) gcc44
+BuildDepends: (%m != x86_64) gcc43, (%m = x86_64) gcc44
 Conflicts: apbs-mpi, maloc, maloc-mpi-lammpi,  maloc-mpi-openmpi
 Replaces:  apbs-mpi, maloc, maloc-mpi-lammpi,  maloc-mpi-openmpi
-ConfigureParams: py_path=/usr/bin/python
+ConfigureParams: py_path=/usr/bin/python --build=%m-apple-darwin`uname -r|cut 
-f1 -d.` --host=%m-apple-darwin`uname -r|cut -f1 -d.`
 SetCFLAGS: -O3
 Description: Adaptive Poisson-Boltzmann Solver
 CompileScript: 
@@ -20,7 +20,6 @@
 F77=gfortran ./configure %c --with-blas=-L${BLAS_DIR} -lblas 
-Wl,-framework -Wl,vecLib -Wl,-undefined -Wl,dynamic_lookup FFLAGS=-O3
 else
 py_path=/usr/bin/python F77=gfortran ./configure %c \
---enable-python  \
 --with-blas=-L${BLAS_DIR} -lblas -Wl,-framework -Wl,vecLib -Wl,-undefined 
-Wl,dynamic_lookup FFLAGS=-O3
 fi
 perl -pi -e 's|cp -Rf tools \${prefix}||g' Makefile


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[cvs] dists/10.4/unstable/main/finkinfo/sci apbs-mpi.info,1.10,1.11

2009-04-12 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv28327

Modified Files:
apbs-mpi.info 
Log Message:
update to apbs 1.1.0 and fix for x86_64 fink

Index: apbs-mpi.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/apbs-mpi.info,v
retrieving revision 1.10
retrieving revision 1.11
diff -u -d -r1.10 -r1.11
--- apbs-mpi.info   24 Apr 2008 19:23:34 -  1.10
+++ apbs-mpi.info   13 Apr 2009 03:40:58 -  1.11
@@ -1,19 +1,20 @@
 Info2: 
 Package: apbs-mpi-%type_pkg[handler]
-Version: 1.0.0
+Version: 1.1.0
 Revision: 1
 Type: handler (lammpi openmpi)
 Conflicts: apbs, apbs-mpi-lammpi, apbs-mpi-openmpi
 Replaces: apbs, apbs-mpi-lammpi, apbs-mpi-openmpi
 Source: http://switch.dl.sourceforge.net/sourceforge/apbs/apbs-%v-source.tar.gz
-Source-MD5: dc9c383ddaf3cd022f4a09f2cb9f1795
+Source-MD5: 8b844ba848cf853da712bbbf9f2e1553
 SourceDirectory: apbs-%v-source
-Depends: (%type_pkg[handler] = lammpi) lammpi (= 7.1.2-1000), 
(%type_pkg[handler] = openmpi) openmpi (= 1.2.5-1000), readline-shlibs (= 
4.3-1028), gnuplot (= 4.0.0-1002), gcc43-shlibs
-BuildDepends: gcc43, (%type_pkg[handler] = lammpi) lammpi-dev (= 7.1.2-1000), 
(%type_pkg[handler] = openmpi) openmpi-dev (= 1.2.5-1000)
+Depends: (%type_pkg[handler] = lammpi) lammpi (= 7.1.2-1000), 
(%type_pkg[handler] = openmpi) openmpi (= 1.2.5-1000), readline-shlibs (= 
4.3-1028), gnuplot (=4.2.0) | gnuplot-nox | gnuplot-nogtk, (%m != x86_64) 
gcc43-shlibs, (%m = x86_64) gcc44-shlibs
+BuildDepends: (%m != x86_64) gcc43, (%m = x86_64) gcc44, (%type_pkg[handler] = 
lammpi) lammpi-dev (= 7.1.2-1000), (%type_pkg[handler] = openmpi) openmpi-dev 
(= 1.2.5-1000)
 Description: Adaptive Poisson-Boltzmann Solver
 SetCC: %p/bin/mpicc
 SetCXX: %p/bin/mpic++
 SetCFLAGS: -O3
+ConfigureParams: --build=%m-apple-darwin`uname -r|cut -f1 -d.` 
--host=%m-apple-darwin`uname -r|cut -f1 -d.`
 CompileScript: 
 #!/bin/zsh -efv
 PATH=/usr/bin:$PATH


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[cvs] dists/10.4/unstable/main/finkinfo/sci apbs.patch,NONE,1.1

2009-04-13 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv6724

Added Files:
apbs.patch 
Log Message:
add fixes to build python support

--- NEW FILE: apbs.patch ---
--- apbs-1.1.0-source/tools/python/Makefile.in.org  2009-04-13 
18:09:30.0 -0400
+++ apbs-1.1.0-source/tools/python/Makefile.in  2009-04-13 18:10:50.0 
-0400
@@ -52,7 +52,6 @@
${top_builddir}/bin/.libs/libapbsmainroutines.a \
${top_builddir}/src/aaa_lib/.libs/libapbs.a \
${top_builddir}/contrib/lib/libmaloc.a \
-   ${top_builddir}/contrib/lib/libapbsblas.a \
$(am__DEPENDENCIES_1)
 DEFAULT_INCLUDES = -I. -I$(top_builddir)/src/aaa_...@am__isrc@
 depcomp =
@@ -235,7 +234,7 @@
 SUBDIRS = vgrid 
 _apbslib_so_SOURCES = apbslib.c
 _apbslib_so_LINK = $(PY_CC) $(PY_LINKFLAGS) -o $@ $(PY_SHARED)
-_apbslib_so_LDADD = ${top_builddir}/bin/.libs/libapbsmainroutines.a 
${top_builddir}/src/aaa_lib/.libs/libapbs.a 
${top_builddir}/contrib/lib/libmaloc.a 
${top_builddir}/contrib/lib/libapbsblas.a $(PY_LDFLAGS)
+_apbslib_so_LDADD = ${top_builddir}/bin/.libs/libapbsmainroutines.a 
${top_builddir}/src/aaa_lib/.libs/libapbs.a 
${top_builddir}/contrib/lib/libmaloc.a $(PY_LDFLAGS)
 all: all-recursive
 
 .SUFFIXES:
--- apbs-1.1.0-source/configure.org 2009-04-13 18:45:48.0 -0400
+++ apbs-1.1.0-source/configure 2009-04-13 18:46:20.0 -0400
@@ -22073,7 +22073,7 @@
;;
darwin**)
PY_CC=${F77}
-   PY_LINKFLAGS=-Wl,-framework -Wl,Python -shared
+   PY_LINKFLAGS=-Wl,-framework -Wl,Python -bundle
PY_LDFLAGS=-Wl,-framework -Wl,Accelerate
;;
mingw*)


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[cvs] dists/10.4/unstable/main/finkinfo/sci apbs.info,1.14,1.15

2009-04-13 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv6874

Modified Files:
apbs.info 
Log Message:
add fixes to build python support

Index: apbs.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/apbs.info,v
retrieving revision 1.14
retrieving revision 1.15
diff -u -d -r1.14 -r1.15
--- apbs.info   13 Apr 2009 03:40:30 -  1.14
+++ apbs.info   13 Apr 2009 22:58:09 -  1.15
@@ -6,12 +6,14 @@
 Source-MD5: 8b844ba848cf853da712bbbf9f2e1553
 #SourceDirectory: %n-%v
 Depends: readline-shlibs (= 4.3-1028), gnuplot (=4.2.0) | gnuplot-nox | 
gnuplot-nogtk, pdb2pqr, (%m != x86_64) gcc43-shlibs, (%m = x86_64) gcc44
-BuildDepends: (%m != x86_64) gcc43, (%m = x86_64) gcc44
+BuildDepends: (%m != x86_64) gcc43, (%m = x86_64) gcc44, fink (= 0.24.12)
 Conflicts: apbs-mpi, maloc, maloc-mpi-lammpi,  maloc-mpi-openmpi
 Replaces:  apbs-mpi, maloc, maloc-mpi-lammpi,  maloc-mpi-openmpi
 ConfigureParams: py_path=/usr/bin/python --build=%m-apple-darwin`uname -r|cut 
-f1 -d.` --host=%m-apple-darwin`uname -r|cut -f1 -d.`
 SetCFLAGS: -O3
 Description: Adaptive Poisson-Boltzmann Solver
+PatchFile: %n.patch
+PatchFile-MD5: 77a1c42600dfb830a74e64ae03c497e9
 CompileScript: 
 #!/bin/zsh -efv
 PATH=/usr/bin:$PATH
@@ -19,7 +21,7 @@
 if [[ $(sw_vers -productVersion)  10.5 ]]; then
 F77=gfortran ./configure %c --with-blas=-L${BLAS_DIR} -lblas 
-Wl,-framework -Wl,vecLib -Wl,-undefined -Wl,dynamic_lookup FFLAGS=-O3
 else
-py_path=/usr/bin/python F77=gfortran ./configure %c \
+py_path=/usr/bin/python F77=gfortran ./configure %c --enable-python \
 --with-blas=-L${BLAS_DIR} -lblas -Wl,-framework -Wl,vecLib -Wl,-undefined 
-Wl,dynamic_lookup FFLAGS=-O3
 fi
 perl -pi -e 's|cp -Rf tools \${prefix}||g' Makefile


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[cvs] dists/10.4/unstable/main/finkinfo/sci pdb2pqr.info,1.11,1.12

2009-04-13 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv22395

Modified Files:
pdb2pqr.info 
Log Message:
fix bizarro build of pdb2pqr

Index: pdb2pqr.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/pdb2pqr.info,v
retrieving revision 1.11
retrieving revision 1.12
diff -u -d -r1.11 -r1.12
--- pdb2pqr.info29 Nov 2008 11:46:31 -  1.11
+++ pdb2pqr.info14 Apr 2009 01:06:39 -  1.12
@@ -1,18 +1,23 @@
 Package: pdb2pqr
-Version: 1.3.0 
-Revision: 2
+Version: 1.4.0 
+Revision: 1
 Source: mirror:sourceforge:%n/%n-%v.tar.gz
-Source-MD5: be38f746cfede22b8ebb5d4bdeac3305 
+Source-MD5: 2ff9907c06b5420cf52e73717fb01a9d
 SourceDirectory: %n-%v
-Depends: numeric-py25, python25
-BuildDepends: fort77
+Depends: numeric-py26, python26, (%m != x86_64) gcc43-shlibs, (%m = x86_64) 
gcc44-shlibs
+BuildDepends: python, python26, (%m != x86_64) gcc43, (%m = x86_64) gcc44
 Description: Converts pdb files to pqr
 NoSetCPPFLAGS: true
 NoSetLDFLAGS: true
-ConfigureParams: py_path=%p/bin/python2.5
 CompileScript: 
 #!/bin/zsh -efv
-./configure --with-max-atoms=100--without-url  
--with-python=%p/bin/python2.5  --with-f77=fort77
+perl -pi -e 's|fort xlf95 lf95 g95|fort xlf95 lf95 g95 gfortran|g' 
./propka/configure
+perl -pi -e 's|/usr/bin/python|%p/bin/python2.6|g' ./pdb2pka/pka.py
+perl -pi -e 's|/usr/bin/python|%p/bin/python2.6|g' ./src/psize.py
+perl -pi -e 's|-Wl,-framework -Wl,Python 
-bundle|%p/lib/python2.6/config/libpython2.6.dylib -bundle|g' ./configure
+perl -pi -e 's|-Wl,-framework -Wl,Python 
-bundle|%p/lib/python2.6/config/libpython2.6.dylib -bundle|g' ./propka/configure
+rm -fr contrib
+./configure --with-max-atoms=100--without-url  
--with-python=%p/bin/python2.6 --with-f77=gfortran 
 make
 rm -f **/*.o
 
@@ -22,11 +27,11 @@
 cp -R * %i/share/pdb2pqr
 #
 mkdir -p %i/bin
-echo #\!/bin/zsh -f   |   %i/bin/pdb2pqr
+echo #!/bin/zsh -f   |   %i/bin/pdb2pqr
 echo %p/share/pdb2pqr/pdb2pqr.py \\...@\  |   %i/bin/pdb2pqr
 chmod a+x%i/bin/pdb2pqr
 #
-echo #\!/bin/zsh -f   |   %i/bin/propka
+echo #!/bin/zsh -f   |   %i/bin/propka
 echo %p/share/pdb2pqr/propka/propka \\...@\   |   %i/bin/propka
 chmod a+x%i/bin/propka
 


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[cvs] dists/10.4/unstable/main/finkinfo/x11 blt.info,1.6,1.7

2009-04-14 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv18709

Modified Files:
blt.info 
Log Message:
assume ownership of blt

Index: blt.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11/blt.info,v
retrieving revision 1.6
retrieving revision 1.7
diff -u -d -r1.6 -r1.7
--- blt.info10 Apr 2009 15:58:23 -  1.6
+++ blt.info15 Apr 2009 03:25:44 -  1.7
@@ -1,7 +1,8 @@
 Package: blt
 Version: 2.4z
 Revision: 15
-Maintainer: None fink-de...@lists.sourceforge.net
+Maintainer: Jack Howarth howa...@bromo.med.uc.edu
+Architecture: i386, powerpc
 BuildDepends: 
fink (= 0.24.12),
libjpeg,


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[cvs] dists/10.4/unstable/main/finkinfo/x11 blt-x86_64.info,NONE,1.1

2009-04-14 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv18858

Added Files:
blt-x86_64.info 
Log Message:
add x86_64 version of blt with tcltk 8.5 patches

--- NEW FILE: blt-x86_64.info ---
Package: blt
Version: 2.4z
Revision: 150
Maintainer: None fink-de...@lists.sourceforge.net
Architecture: x86_64
BuildDepends: 
fink (= 0.24.12),
libjpeg,
tcltk-dev (= 8.4.1-1),
x11-dev

Depends: 
%N-shlibs (= %v-%r),
libjpeg-shlibs,
tcltk (= 8.4.1-1),
x11

Source: mirror:sourceforge:%N/BLT%v.tar.gz
Source-MD5: aa2ed73080f3005d9c2a3b5e57ab1eff
SourceDirectory: %N%v
PatchFile: %n-x86_64.patch
PatchFile-MD5: 118816133c55e3a1847fa16d6ab01fa1
SetCFLAGS: -O3 -fno-common
NoSetMAKEFLAGS: true
SetMAKEFLAGS: -j1
ConfigureParams: --mandir=%p/share/man --x-includes=/usr/X11R6/include 
--x-libraries=/usr/X11R6/lib --with-tcllibs=%p/lib --with-tklibs=%p/lib 
--enable-jpeg
InstallScript: 
mkdir -p %i/share/man
make install INSTALL_ROOT=%d
ln -s libBLT.2.dylib %i/lib/libBLT.dylib
ln -s libBLTlite.2.dylib %i/lib/libBLTlite.dylib
mv %i/share/man/mann/graph.n %i/share/man/mann/graph.nblt
mv %i/share/man/mann/bitmap.n %i/share/man/mann/bitmap.nblt

DocFiles: NEWS PROBLEMS README
SplitOff: 
 Package: %N-shlibs
 Depends: 
libjpeg-shlibs,
tcltk-shlibs (= 8.4.1-1),
x11
 
 Files: lib/*.*.dylib
 Shlibs: 
  %p/lib/libBLT.2.dylib 2.0.0 %n (= 2.4z-1)
  %p/lib/libBLTlite.2.dylib 2.0.0 %n (= 2.4z-1)
 
 DocFiles: NEWS PROBLEMS README

SplitOff2: 
 Package: %N-dev
 Depends: %N-shlibs (= %v-%r)
 Replaces: blt-man ( 2.4z-15)
 Conflicts: blt-man ( 2.4z-15)
 Files: include lib/*.a lib/*.dylib share/man
 DocFiles: NEWS PROBLEMS README
 BuildDependsOnly: True

Description: Toolkit for tcl/tk
DescPort: 
Patches so the tcl/tk libraries can be found and shared libraries can be
built.

Patches and hand-tweaks for some OS X platform-dependent stuff.

Formerly maintained by Matt Stephenson.

DescPackaging: 
Multiple patches to ensure everything is installed in the deb and not
directly into the fink directory.

Rename a manpage that collides with one in tcllib (had been
same-named but placed in blt-man until 2.4z-15)

Rename a manpage that collides with one in tcltk (had been
not installed in blt/blt-man until 2.4z-15)

Add blt2.4z-patch-64 from Fedora blt rpm for x86_64 build

License: BSD
Homepage: http://sourceforge.net/projects/blt


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[cvs] dists/10.4/unstable/main/finkinfo/x11 blt-x86_64.patch, NONE, 1.1

2009-04-14 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv18910

Added Files:
blt-x86_64.patch 
Log Message:
add x86_64 version of blt with tcltk 8.5 patches

--- NEW FILE: blt-x86_64.patch ---
diff -Nurd -x'*~' blt2.4z.orig/Makefile.in blt2.4z/Makefile.in
--- blt2.4z.orig/Makefile.in2002-02-18 19:11:43.0 -0500
+++ blt2.4z/Makefile.in 2008-08-27 21:14:50.0 -0400
@@ -47,9 +47,9 @@
(cd library; $(MAKE) install)
(cd man; $(MAKE) install)
(cd demos; $(MAKE) install)
-   $(INSTALL_DATA) $(srcdir)/README $(INSTALL_DIR)$(scriptdir)
-   $(INSTALL_DATA) $(srcdir)/PROBLEMS $(INSTALL_DIR)$(scriptdir)
-   $(INSTALL_DATA) $(srcdir)/NEWS $(INSTALL_DIR)$(scriptdir)
+   $(INSTALL_DATA) $(srcdir)/README $(INSTALL_ROOT)$(scriptdir)
+   $(INSTALL_DATA) $(srcdir)/PROBLEMS $(INSTALL_ROOT)$(scriptdir)
+   $(INSTALL_DATA) $(srcdir)/NEWS $(INSTALL_ROOT)$(scriptdir)
 
 mkdirs:
@for i in $(instdirs) ; do \
diff -Nurd -x'*~' blt2.4z.orig/configure blt2.4z/configure
--- blt2.4z.orig/configure  2002-10-04 01:33:59.0 -0400
+++ blt2.4z/configure   2008-08-27 21:50:54.0 -0400
@@ -3396,6 +3396,9 @@
   *-hpux*)
 SHLIB_SUFFIX=sl
 ;;
+  *-darwin*)
+SHLIB_SUFFIX=dylib
+;;
   *)
 SHLIB_SUFFIX=so
 ;;
@@ -3851,7 +3854,7 @@
 SHLIB_LD_FLAGS=$TCL_LD_FLAGS
 SHLIB_RUNPATH=$TCL_LD_SEARCH_FLAGS
 
-SHLIB_SUFFIX=.so
+SHLIB_SUFFIX=.${SHLIB_SUFFIX}
 SHLIB_TARGET=
 SHLIB_CFLAGS=
 SHLIB_LIB_SPECS=${JPEG_LIB_SPEC}
@@ -4000,7 +4003,6 @@
   SHLIB_CFLAGS=+Z
   SHLIB_LD=ld
   SHLIB_LD_FLAGS=-b -E -n +s +b,${loader_run_path}:.
-  SHLIB_SUFFIX=.sl
 
   # The run path is included in both LDFLAGS and SHLIB_LD_FLAGS
   # because SHLIB_LD is ld and LD is cc/gcc.
@@ -4208,6 +4210,9 @@
 SHLIB_LD_FLAGS= -Wl,-Bexport
 ;;
   
+  *-darwin*)
+;;
+
   *)
 build_shared=no
 ;;
diff -Nurd -x'*~' blt2.4z.orig/library/Makefile.in blt2.4z/library/Makefile.in
--- blt2.4z.orig/library/Makefile.in2002-07-14 19:33:24.0 -0400
+++ blt2.4z/library/Makefile.in 2008-08-27 21:00:45.0 -0400
@@ -58,7 +58,7 @@
for i in $(miscFiles) ; do \
$(INSTALL_DATA) $(srcdir)/$$i $(INSTALL_ROOT)$(scriptdir) ; \
done 
-   $(INSTALL_DATA) pkgIndex.tcl $(scriptdir)
+   $(INSTALL_DATA) pkgIndex.tcl $(INSTALL_ROOT)$(scriptdir)
 
 mkdirs:
@for i in $(instdirs) ; do \
diff -Nurd -x'*~' blt2.4z.orig/library/pkgIndex.tcl.in 
blt2.4z/library/pkgIndex.tcl.in
--- blt2.4z.orig/library/pkgIndex.tcl.in2002-07-14 19:33:24.0 
-0400
+++ blt2.4z/library/pkgIndex.tcl.in 2008-08-27 21:53:36.0 -0400
@@ -10,9 +10,9 @@
 # the lite tcl-only version.
 
 if { [info commands tk] == tk } {
-set name ${prefix}BLT${version_no_dots}${suffix}
+set name ${prefix}BLT.2${suffix}
 } else {
-set name ${prefix}BLTlite${version_no_dots}${suffix}
+set name ${prefix}BLTlite.2${suffix}
 }
 
 global tcl_platform
diff -Nurd -x'*~' blt2.4z.orig/src/bltHash.c blt2.4z/src/bltHash.c
--- blt2.4z.orig/src/bltHash.c  2002-08-09 03:15:18.0 -0400
+++ blt2.4z/src/bltHash.c   2008-08-27 19:04:43.0 -0400
@@ -1302,7 +1302,7 @@
 sprintf(result, %ld entries in table, %ld buckets\n,
tablePtr-numEntries, tablePtr-numBuckets);
 #else 
-sprintf(result, %d entries in table, %d buckets\n,
+sprintf(result, %zd entries in table, %zd buckets\n,
tablePtr-numEntries, tablePtr-numBuckets);
 #endif
 p = result + strlen(result);
@@ -1311,7 +1311,7 @@
sprintf(p, number of buckets with %ld entries: %ld\n,
i, count[i]);
 #else 
-   sprintf(p, number of buckets with %d entries: %d\n,
+   sprintf(p, number of buckets with %zd entries: %zd\n,
i, count[i]);
 #endif
p += strlen(p);
@@ -1320,7 +1320,7 @@
 sprintf(p, number of buckets with %d or more entries: %ld\n,
NUM_COUNTERS, overflow);
 #else 
-sprintf(p, number of buckets with %d or more entries: %d\n,
+sprintf(p, number of buckets with %d or more entries: %zd\n,
NUM_COUNTERS, overflow);
 #endif
 p += strlen(p);
@@ -1329,7 +1329,7 @@
 #if SIZEOF_VOID_P == 8
 sprintf(p, maximum search distance for entry: %ld, max);
 #else
-sprintf(p, maximum search distance for entry: %d, max);
+sprintf(p, maximum search distance for entry: %zd, max);
 #endif
 return result;
 }
diff -Nurd -x'*~' blt2.4z.orig/src/shared/Makefile.in 
blt2.4z/src/shared/Makefile.in
--- blt2.4z.orig/src/shared/Makefile.in 2002-05-14 17:37:19.0 -0400
+++ blt2.4z/src/shared/Makefile.in  2008-08-27 22:01:37.0 -0400
@@ -120,8 +120,8 @@
 LN_S = @LN_S@
 bltwish =  bltwish$(version)
 bltsh =bltsh$(version)
-lib_so =   libBLT$(version)$(SHLIB_SUFFIX)
-tcl_only_lib_so = 

[cvs] dists/10.4/unstable/main/finkinfo/languages tcltk-x86_64.info, NONE, 1.1

2009-04-14 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv19298

Added Files:
tcltk-x86_64.info 
Log Message:
switch x86_64 to 8.5 as default tcl/tk

--- NEW FILE: tcltk-x86_64.info ---
Package: tcltk
Version: 8.5.6
Revision: 1
Architecture: x86_64
BuildDepends: x11-dev, fink (= 0.24.12-1)
Depends: %N-shlibs (= %v-%r)
Source: mirror:sourceforge:tcl/tcl%v-src.tar.gz
Source-MD5: d0b0b3ff7600ff63135c710b575265cd
SourceDirectory: tcl%v
Source2: mirror:sourceforge:tcl/tk%v-src.tar.gz
Source2-MD5: 7da2e00adddc7eed6080df904579d94e
NoSourceDirectory: true
ConfigureParams: --enable-shared --exec-prefix=%p --mandir=%p/share/man 
--x-includes=/usr/X11R6/include --x-libraries=/usr/X11R6/lib
CompileScript: 
#!/bin/sh -ev

pushd tcl%v/unix
export COMMAND_MODE=legacy
./configure %c --build=%m-apple-darwin`uname -r|cut -f1 -d.` 
--host=%m-apple-darwin`uname -r|cut -f1 -d.`
make
popd

pushd tk%v/unix
./configure %c --build=%m-apple-darwin`uname -r|cut -f1 -d.` 
--host=%m-apple-darwin`uname -r|cut -f1 -d.`
make genstubs
make
popd

InstallScript: 
mkdir -p %i/share/doc/%n
make -C tcl%v/unix INSTALL_ROOT=%d install
make -C tk%v/unix  INSTALL_ROOT=%d install

ln -s wish8.5 %i/bin/wish
ln -s tclsh8.5 %i/bin/tclsh

ln -s tk8.5 %i/lib/tk
ln -s libtk8.5.dylib %i/lib/libtk.dylib
ln -s libtkstub8.5.a %i/lib/libtkstub.a
/usr/bin/ranlib %i/lib/libtclstub8.5.a

ln -s tcl8.5 %i/lib/tcl
ln -s libtcl8.5.dylib %i/lib/libtcl.dylib
ln -s libtclstub8.5.a %i/lib/libtclstub.a
/usr/bin/ranlib %i/lib/libtkstub8.5.a

SplitOff: 
  Package: %N-shlibs
  Depends: x11
  Files: lib/libtcl8.5.dylib lib/libtk8.5.dylib
  Shlibs: 
%p/lib/libtcl8.5.dylib 8.5.0 %n (= 8.5.6-1)
%p/lib/libtk8.5.dylib 8.5.0 %n (= 8.5.6-1)
  
  DocFiles: 
tcl%v/license.terms:LICENSE.tcl
tcl%v/README:README.tcl
tcl%v/ChangeLog:ChangeLog.tcl
tk%v/license.terms:LICENSE.tk
tk%v/README:README.tk
tk%v/ChangeLog:ChangeLog.tk 


SplitOff2: 
  Package: %N-dev
  BuildDependsOnly: True
  Depends: %N (= %v-%r), %N-shlibs (= %v-%r)
  Files: 
lib/tclConfig.sh
lib/tkConfig.sh
include
lib/libtcl*
lib/libtk*
share/man/man3
share/man/mann

  DocFiles: 
tcl%v/license.terms:LICENSE.tcl
tcl%v/README:README.tcl
tcl%v/ChangeLog:ChangeLog.tcl
tk%v/license.terms:LICENSE.tk
tk%v/README:README.tk
tk%v/ChangeLog:ChangeLog.tk 



DocFiles: 
tcl%v/license.terms:LICENSE.tcl
tcl%v/README:README.tcl
tcl%v/ChangeLog:ChangeLog.tcl
tk%v/license.terms:LICENSE.tk
tk%v/README:README.tk
tk%v/ChangeLog:ChangeLog.tk 

Description: Tool Command Language and the Tk toolkit
DescPort: 
 We add /System/Library/Tcl and /usr/lib to TCL_PACKAGE_PATH so that
 Tcl packages (such as darwinports) installed in the standard system
 locations will be found.

 What is COMMAND_MODE?

 Pass CPPFLAGS so it works as everyone expects (*after* local flags),
 despite how build system incorrectly reimplements it differently.

DescPackaging: 
 Patch added for crash caused by changed LASTEvent definition in
 the xquartz-2.3.0 update. Does not affect binary compatibility.

tcl and tk are build in separate/parallel dirs. Clearer to do
NoSourceDirectory and have them both subdirs of %b than to
have one be %b and keep having to 'cd ..'

DescDetail: 
Tcl provides a portable scripting environment for Unix, Windows,
and Macintosh that supports string processing and pattern matching,
native file system access, shell-like control over other programs,
TCP/IP networking, timers, and event-driven I/O.

Tcl has traditional programming constructs like variables, loops,
procedures, namespaces, error handling, script packages, 
and dynamic loading of DLLs.

Tk provides portable GUIs on UNIX, Windows, and Macintosh.
A powerful widget set and the concise scripting interface to Tk make
it a breeze to develop sophisticated user interfaces.

PostInstScript: 
update-alternatives --install %p/share/man/man3/Object.3 Object.3 
%p/share/man/man3/Object.3.tcltk 60

PreRmScript: 
if [ $1 != upgrade ]; then
  update-alternatives --remove Object.3 %p/share/man/man3/Object.3.tcltk
fi

License: BSD
Homepage: http://www.tcl.tk
Maintainer: Daniel Macks dma...@netspace.org


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[cvs] dists/10.4/unstable/main/finkinfo/languages python25.info, 1.13, 1.14

2009-04-14 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv19382

Modified Files:
python25.info 
Log Message:
use tcltk 8.5 on x86_64

Index: python25.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages/python25.info,v
retrieving revision 1.13
retrieving revision 1.14
diff -u -d -r1.13 -r1.14
--- python25.info   10 Apr 2009 22:32:48 -  1.13
+++ python25.info   15 Apr 2009 03:32:47 -  1.14
@@ -61,6 +61,7 @@
 #!/bin/sh -ex
 if [ %m = x86_64 ]; then
 perl -pi.bak -e 's|num_missing != 5:|num_missing != 7:|g' 
./setup.py
+perl -pi.bak -e s/8.4\'/8.5\'/ ./setup.py
 ./configure %c --disable-toolbox-glue
 else
 ./configure %c


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[cvs] dists/10.4/unstable/main/finkinfo/languages python26.info, 1.4, 1.5

2009-04-14 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv19427

Modified Files:
python26.info 
Log Message:
use tcltk 8.5 on x86_64

Index: python26.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages/python26.info,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -d -r1.4 -r1.5
--- python26.info   10 Apr 2009 15:40:09 -  1.4
+++ python26.info   15 Apr 2009 03:33:11 -  1.5
@@ -48,6 +48,7 @@
 #!/bin/sh -ex
if [ %m = x86_64 ]; then
perl -pi.bak -e 's|num_missing != 5:|num_missing != 7:|g' 
./setup.py
+perl -pi.bak -e s/8.4\'/8.5\'/ ./setup.py
./configure %c --disable-toolbox-glue
else
./configure %c


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[cvs] dists/10.4/unstable/main/finkinfo/database sqlite3-x86_64.info, NONE, 1.1

2009-04-14 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/database
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv19591

Added Files:
sqlite3-x86_64.info 
Log Message:
build without tcl support on x86_64 because of tcltk 8.5

--- NEW FILE: sqlite3-x86_64.info ---
Package: sqlite3
Version: 3.6.13
Revision: 1000
Architecture: x86_64

Description: Embedded SQL database, version 3
DescDetail: 
SQLite is a C library that implements an embeddable SQL database engine.
Programs that link with the SQLite library can have SQL database access
without running a separate RDBMS process. The distribution comes with a
standalone command-line access program ( sqlite ) that can be used to
administer an SQLite database and which serves as an example of how to
use the SQLite library.


License: Public Domain 
Maintainer: Pepe Barbe pepe.ba...@gmail.com
Homepage: http://www.sqlite.org/

DocFiles: README VERSION LICENSE

Source: http://sqlite.org/sqlite-%v.tar.gz
Source-MD5: 42cb2690221e72dfb0d500c3a063e0ec

# Patch so that 'make test' works and the lemon binary is buffer overflow
# safe if we ever decide to install at (Debian and Ubuntu installs it).
PatchFile: %n.patch
PatchFile-MD5: a2b5800ef97ad3462a0b239e16048016
PatchScript: 
%{default_script}
head -n 10 src/sqlite.h.in  LICENSE

ConfigureParams: --disable-tcl --enable-threadsafe --enable-load-extension
NoSetCPPFLAGS: true
SetCPPFLAGS: -I%p/include/readline
SetCFLAGS: -Os -DSQLITE_ENABLE_COLUMN_METADATA=1
# Compiling with the -D flag is needed for libgda

Depends: %N-shlibs (= %v-%r), readline5-shlibs (= 5.0-1004)
BuildDepends: readline5 (= 5.0-1004), libncurses5 (= 5.4-20041023-1006), fink 
(= 0.28)
# Does NOT conflict with package sqlite
BuildConflicts: lclint
# lclint installs %p/lib/Makefile, which leads configure to believe
# it has to use tcltk from its builddir, hence failure

CompileScript: 
#!/bin/sh -ev
config_TARGET_READLINE_LIBS='-L%p/lib -lreadline -lncurses' \
./configure %c
make


InfoTest: 
TestScript: make test || exit 2


InstallScript: 
#!/bin/sh -ev
make install DESTDIR=%d


SplitOff:  
Package: %N-shlibs
Description: Embedded SQL database (shared libraries)
DocFiles: VERSION LICENSE
Shlibs: %p/lib/libsqlite3.0.dylib 9.0.0 %n (= 3.0.8-1)
Files: lib/libsqlite3.0.dylib


SplitOff2:  
Package: %N-dev
Description: Embedded SQL database (include files and linkable libraries)
Depends: %N-shlibs (= %v-%r)
# Does NOT conflict with sqlite-dev, strangely enough

# lib/libsqlite3.dylib accidentally placed in %N for a time
Replaces: %N ( 3.6.9-1003)

DocFiles: VERSION LICENSE
BuildDependsOnly: True
Files: 
include
lib/libsqlite3.la
lib/libsqlite3.a
lib/libsqlite3.dylib
lib/pkgconfig




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[cvs] dists/10.4/unstable/main/finkinfo/utils expect-x86_64.info, NONE, 1.1

2009-04-14 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/utils
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv26196

Added Files:
expect-x86_64.info 
Log Message:
add x86_64 variant to build on tcltk 8.5

--- NEW FILE: expect-x86_64.info ---
Package: expect
Version: 5.43.0
Revision: 100
Architecture: x86_64
Maintainer: Matthias Neeracher neerac...@mac.com
BuildDepends: tcltk-dev (= 8.5.6-1), x11-dev, fink (= 0.24.12) 
Depends: tcltk (= 8.5.6-1)
Source: http://expect.nist.gov/src/%n-%v.tar.gz
SourceDirectory: %n-5.43
Source2: mirror:sourceforge:tcl/tcl8.5.6-src.tar.gz
Source-MD5: 43e1dc0e0bc9492cf2e1a6f59f276bc3
Source2-MD5: d0b0b3ff7600ff63135c710b575265cd
PatchFile: %n.patch
PatchFile-MD5: 20eea2238e6773033ec066e671f47476 
#UpdateConfigGuess: true
ConfigureParams: --mandir='$(prefix)/share/man' --with-tcl=%p/lib 
--with-tk=%p/lib --x-inc=/usr/X11R6/include --x-lib=/usr/X11R6/lib 
--with-tkinclude=%p/include --with-tclinclude=../tcl8.5.6/generic 
--build=%m-apple-darwin`uname -r|cut -f1 -d.` --host=%m-apple-darwin`uname 
-r|cut -f1 -d.` --target=%m-apple-darwin`uname -r|cut -f1 -d.`
SetCFLAGS: -I%p/include -I/usr/X11R6/include -I../tcl8.5.6/unix
SplitOff: 
 Package: %N-dev
 BuildDependsOnly: true
 Files: 
 include/*.h
 lib/*.a
 lib/%N5.43/*.a
 bin/[a-df-z]*
 share/man/man1/[a-df-z]*
 
 DocFiles: README

DocFiles: FAQ HISTORY NEWS README
Description: Tool for automatic interactive applications
DescDetail: 
Expect is a tool for automating interactive applications such as
telnet, ftp, passwd, fsck, rlogin, tip, etc. Expect really makes this
stuff trivial. Expect is also useful for testing these same
applications. 

DescPort: 
Expect has to access internal Tcl headers, so it needs to grab the tcl
distribution during build (This should not require an extra download
since the source should still be around from the tcltk dependency).

License: Public Domain
Homepage: http://expect.nist.gov


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[cvs] dists/10.4/unstable/main/finkinfo/utils expect.patch,NONE,1.1

2009-04-14 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/utils
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv26262

Added Files:
expect.patch 
Log Message:
add x86_64 variant to build on tcltk 8.5

--- NEW FILE: expect.patch ---
diff -up expect-5.43/Dbg.c.tcl8.5 expect-5.43/Dbg.c
--- expect-5.43/Dbg.c.tcl8.52002-03-23 05:11:54.0 +0100
+++ expect-5.43/Dbg.c   2008-09-25 12:25:40.0 +0200
@@ -10,6 +10,7 @@ would appreciate credit if this program 
 
 #include stdio.h
 
+#include expect_cf.h
 #include tcldbgcf.h
 #if 0
 /* tclInt.h drags in stdlib.  By claiming no-stdlib, force it to drag in */
diff -up expect-5.43/exp_inter.c.tcl8.5 expect-5.43/exp_inter.c
--- expect-5.43/exp_inter.c.tcl8.5  2004-08-18 04:03:00.0 +0200
+++ expect-5.43/exp_inter.c 2008-09-25 12:25:40.0 +0200
@@ -36,6 +36,7 @@ would appreciate credit if this program 
 #include ctype.h
 
 #include tcl.h
+#include tclInt.h
 #include string.h
 
 #include exp_tty_in.h
diff -up expect-5.43/exp_command.c_old expect-5.43/exp_command.c
--- expect-5.43/exp_command.c_old   2009-02-10 16:23:48.0 +0100
+++ expect-5.43/exp_command.c   2009-02-10 16:31:38.0 +0100
@@ -2311,12 +2311,11 @@ Tcl_Obj *CONST objv[];  /* Argument objec
/* Historical note: we used close  long before there was a */
/* Tcl builtin by the same name. */
 
-   Tcl_CmdInfo info;
+   Tcl_CmdInfo* close_info;
Tcl_ResetResult(interp);
-   if (0 == Tcl_GetCommandInfo(interp,close,info)) {
-   info.clientData = 0;
-   }
-   return(Tcl_CloseObjCmd(info.clientData,interp,objc_orig,objv_orig));
+
+   close_info = (Tcl_CmdInfo*) Tcl_GetAssocData (interp, 
EXP_CMDINFO_CLOSE, NULL);
+   return(close_info-objProc(close_info-objClientData,interp,objc,objv));
 }
 
 if (chanName) {
@@ -2961,7 +2960,10 @@ Tcl_Obj *CONST objv[];
 /* if successful (i.e., TCL_RETURN is returned) */
 /* modify the result, so that we will handle it specially */
 
-int result = Tcl_ReturnObjCmd(clientData,interp,objc,objv);
+Tcl_CmdInfo* return_info = (Tcl_CmdInfo*)
+Tcl_GetAssocData (interp, EXP_CMDINFO_RETURN, NULL);
+
+int result = 
return_info-objProc(return_info-objClientData,interp,objc,objv);
 if (result == TCL_RETURN)
 result = EXP_TCL_RETURN;
 return result;
diff -up expect-5.43/exp_command.h_old expect-5.43/exp_command.h
--- expect-5.43/exp_command.h_old   2009-02-10 17:33:19.0 +0100
+++ expect-5.43/exp_command.h   2009-02-10 17:33:46.0 +0100
@@ -326,3 +326,6 @@ EXTERN ExpState *   expDevttyGet _ANSI_ARG
 /* generic functions that really should be provided by Tcl */
 EXTERN int expSizeGet _ANSI_ARGS_((ExpState *));
 EXTERN int expSizeZero _ANSI_ARGS_((ExpState *));
+
+#define EXP_CMDINFO_CLOSE  expect/cmdinfo/close
+#define EXP_CMDINFO_RETURN expect/cmdinfo/return


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[cvs] dists/10.4/unstable/main/finkinfo/languages tcltk-x86_64.patch, NONE, 1.1

2009-04-15 Thread Jack Howarth
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv2739

Added Files:
tcltk-x86_64.patch 
Log Message:
add fedora's fix for expect

--- NEW FILE: tcltk-x86_64.patch ---
--- tcltk-8.5.6.orig/tcl8.5.6/generic/tclPort.h 2008-11-04 18:56:59.0 
-0500
+++ tcltk-8.5.6/tcl8.5.6/generic/tclPort.h  2009-04-15 01:52:52.0 
-0400
@@ -24,7 +24,7 @@
 #if defined(__WIN32__)
 #   include tclWinPort.h
 #else
-#   include tclUnixPort.h
+#   include ../unix/tclUnixPort.h
 #endif
 
 #if !defined(LLONG_MIN)
--- tcltk-8.5.6.orig/tcl8.5.6/generic/tclInt.h  2008-11-13 19:22:39.0 
-0500
+++ tcltk-8.5.6/tcl8.5.6/generic/tclInt.h   2009-04-15 01:52:52.0 
-0400
@@ -2773,7 +2773,7 @@
 MODULE_SCOPE int   TclClockOldscanObjCmd(
ClientData clientData, Tcl_Interp *interp,
int objc, Tcl_Obj *const objv[]);
-MODULE_SCOPE int   Tcl_CloseObjCmd(ClientData clientData,
+extern int Tcl_CloseObjCmd(ClientData clientData,
Tcl_Interp *interp, int objc,
Tcl_Obj *const objv[]);
 MODULE_SCOPE int   Tcl_ConcatObjCmd(ClientData clientData,
@@ -2934,7 +2934,7 @@
 MODULE_SCOPE int   Tcl_RenameObjCmd(ClientData clientData,
Tcl_Interp *interp, int objc,
Tcl_Obj *const objv[]);
-MODULE_SCOPE int   Tcl_ReturnObjCmd(ClientData clientData,
+extern int Tcl_ReturnObjCmd(ClientData clientData,
Tcl_Interp *interp, int objc,
Tcl_Obj *const objv[]);
 MODULE_SCOPE int   Tcl_ScanObjCmd(ClientData clientData,


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