[cvs] dists/10.4/unstable/main/finkinfo/sci emboss.info,1.40,1.41

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv7683

Modified Files:
emboss.info 
Log Message:
add automake to bdep

Index: emboss.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/emboss.info,v
retrieving revision 1.40
retrieving revision 1.41
diff -u -d -r1.40 -r1.41
--- emboss.info 27 Jul 2010 03:39:20 -  1.40
+++ emboss.info 28 Jul 2010 00:01:23 -  1.41
@@ -1,6 +1,6 @@
 Package: emboss
 Version: 6.3.1
-Revision: 2
+Revision: 3
 #Distribution: 10.4, 10.5
 
 Depends: 
@@ -19,6 +19,8 @@
 
 
 BuildDepends: 
+ autoconf2.6,
+ automake1.11,
  fink (= 0.24.12),
  fontconfig2-dev (= 2.4.1-1),
  freetype219 (= 2.3.8-2),
@@ -27,7 +29,6 @@
  libjpeg, 
  libpng3, 
  libtool2,
- autoconf,
  system-java-dev (= 1.5.0),
  x11-dev
 
@@ -61,7 +62,7 @@
   make install DESTDIR=%d
   mkdir -p %i/include/EMBOSS
   mv %i/include/*.* %i/include/EMBOSS/
-  ln -s 
EMBOSS/lib{ajax,ajaxg,ajaxdb,nucleus,eplplot,acd,eexpat,ensemble,epcre,ezlib}.dylib
 %i/lib
+  ln -s 
EMBOSS/lib{ajax,ajaxg,ajaxdb,nucleus,eplplot,acd,eexpat,ensembl,epcre,ezlib}.dylib
 %i/lib
   mv %i/lib/EMBOSS/*.*a %i/lib
 
 


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[cvs] dists/10.4/unstable/main/finkinfo/sci emboss.info,1.39,1.40

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv7349

Modified Files:
emboss.info 
Log Message:
fix that allows using most recent libtool version

Index: emboss.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/emboss.info,v
retrieving revision 1.39
retrieving revision 1.40
diff -u -d -r1.39 -r1.40
--- emboss.info 24 Jul 2010 19:56:26 -  1.39
+++ emboss.info 27 Jul 2010 03:39:20 -  1.40
@@ -1,6 +1,6 @@
 Package: emboss
 Version: 6.3.1
-Revision: 1
+Revision: 2
 #Distribution: 10.4, 10.5
 
 Depends: 
@@ -26,7 +26,8 @@
  libiconv-dev, 
  libjpeg, 
  libpng3, 
- libtool2 (= 2.2.6b-1),
+ libtool2,
+ autoconf,
  system-java-dev (= 1.5.0),
  x11-dev
 
@@ -50,6 +51,12 @@
  --docdir=%p/share/EMBOSS 
 
 
+CompileScript: 
+  %p/bin/autoreconf -fi
+  ./configure %c
+  make
+
+
 Installscript: 
   make install DESTDIR=%d
   mkdir -p %i/include/EMBOSS


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[cvs] dists/10.4/unstable/main/finkinfo/sci emboss.info, 1.38, 1.39 emboss.patch, 1.19, 1.20

[Koen van der Drift]

-include/EMBOSS/pcre*.h
-include/EMBOSS/pcre_printint.src
-include/EMBOSS/trees.h
-include/EMBOSS/ucp.h
-include/EMBOSS/z*.h
+include/eexpat
+include/epcre
+include/ezlib
   
   BuildDependsOnly: True
 
@@ -166,7 +146,15 @@
 
 SplitOff30: 
   Package: %N-plplot3-shlibs
-  Depends: libpng3-shlibs, libjpeg-shlibs, gd2-shlibs, libiconv, x11-shlibs, 
fontconfig2-shlibs (= 2.4.1-1), freetype219-shlibs (= 2.3.8-2)
+  Depends: 
+   fontconfig2-shlibs (= 2.4.1-1), 
+   freetype219-shlibs (= 2.3.8-2),
+   gd2-shlibs, 
+   libpng3-shlibs, 
+   libjpeg-shlibs, 
+   libiconv, 
+   x11-shlibs 
+  
   # identical Shlibs-supplier package was previously named as 5 and 6
   # uses 3 as of 6.1.0-4 to match .dylib filename
   Replaces: %N ( 5.0.0-1), %N-plplot5-shlibs, %N-plplot6-shlibs
@@ -187,7 +175,7 @@
   Files: 
 lib/libeplplot*
 lib/EMBOSS/libeplplot*
-include/eplplot/*.h
+include/eplplot
   
   BuildDependsOnly: True
 
@@ -198,8 +186,9 @@
 
 
 DocFiles: 
-  AUTHORS ChangeLog COMPAT COPYING FAQ INSTALL KNOWN_BUGS LICENSE NEWS 
PROBLEMS README THANKS
+  AUTHORS ChangeLog COMPAT COPYING FAQ INSTALL KNOWN_BUGS LICENSE NEWS 
PROBLEMS README README.fixes THANKS
 
+
 Description: Molecular Biology Open Software Suite
 DescDetail: 
 EMBOSS is a free Open Source software analysis package specially
@@ -220,6 +209,7 @@
 
 Install kemboss-qt4 for a GUI that works either in Aqua or X11.
 
+
 DescPort: 
   dmacks added explicit linking to libs that supply symbols used by
   the shared libraries here. This prevents things that link against
@@ -230,6 +220,7 @@
   against each other and patched to assure use of EMBOSS's own pcre
   headers (libpcre doesn't understand ABI compatibility rules:(
 
+
 Maintainer: Koen van der Drift drift...@users.sourceforge.net
 Homepage: http://emboss.sourceforge.net
 License: GPL


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods class-c3-pm.info, 1.3, 1.4 data-section-pm.info, 1.4, 1.5

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv1009

Modified Files:
class-c3-pm.info data-section-pm.info 
Log Message:
new upstream versions

Index: data-section-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/data-section-pm.info,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -d -r1.4 -r1.5
--- data-section-pm.info22 May 2010 11:38:39 -  1.4
+++ data-section-pm.info21 Jul 2010 23:30:19 -  1.5
@@ -1,6 +1,6 @@
 Info2: 
 Package: data-section-pm%type_pkg[perl]
-Version: 0.100770
+Version: 0.101620
 Revision: 1
 Description: Read data out of your DATA section
 Architecture: (%type_pkg[perl] = 581) powerpc
@@ -20,7 +20,7 @@
 
 
 Source: mirror:cpan:authors/id/R/RJ/RJBS/Data-Section-%v.tar.gz
-Source-MD5: aca27f967b1ee5cd82b5f5ce3d80c396
+Source-MD5: ab3956489991b41a6604aad81a4d3a0b
 
 InstallScript: 
  %{default_script}

Index: class-c3-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/class-c3-pm.info,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- class-c3-pm.info22 May 2010 18:26:48 -  1.3
+++ class-c3-pm.info21 Jul 2010 23:30:19 -  1.4
@@ -1,6 +1,6 @@
 Info2: 
 Package: class-c3-pm%type_pkg[perl]
-Version: 0.22
+Version: 0.23
 Revision: 1
 Distribution: (%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5, 
(%type_pkg[perl] = 5100) 10.5, (%type_pkg[perl] = 5100) 10.6
 Type: perl (5.8.6 5.8.8 5.10.0)
@@ -15,7 +15,7 @@
 
 ###
 Source: mirror:cpan:authors/id/F/FL/FLORA/Class-C3-%v.tar.gz
-Source-MD5: 9b5ad010984a7d276d13b91151e2183d
+Source-MD5: 5b997841af85a5f8ed8add7120d56611
 ###
 UpdatePOD: true
 ###


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[cvs] dists/10.4/unstable/main/finkinfo/sci eigen2.info,1.17,1.18

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv2050

Modified Files:
eigen2.info 
Log Message:
new upstream version

Index: eigen2.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/eigen2.info,v
retrieving revision 1.17
retrieving revision 1.18
diff -u -d -r1.17 -r1.18
--- eigen2.info 14 Mar 2010 19:38:59 -  1.17
+++ eigen2.info 21 Jul 2010 23:35:54 -  1.18
@@ -1,5 +1,5 @@
 Package: eigen2
-Version: 2.0.12
+Version: 2.0.15
 Revision: 1
 Maintainer: Koen van der Drift drift...@users.sourceforge.net
 BuildDepends: cmake (= 2.6.2)
@@ -7,7 +7,7 @@
 
 SourceDirectory: eigen
 Source: http://bitbucket.org/eigen/eigen/get/%v.bz2
-Source-MD5: d0195ac20bcd91602db8ca967a21e9ec
+Source-MD5: 390a8c72a0ac79ce6766d84ffeaf4ebc
 SourceRename: %n-%v.tar.bz2
 CompileScript: 
  #!/bin/sh -ev


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[cvs] dists/10.4/unstable/main/finkinfo/sci tcoffee-10.4.info, 1.20, 1.21 tcoffee-10.5.info, 1.21, 1.22 tcoffee-10.6.info, 1.5, 1.6

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv2728

Modified Files:
tcoffee-10.4.info tcoffee-10.5.info tcoffee-10.6.info 
Log Message:
new upstream version

Index: tcoffee-10.6.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/tcoffee-10.6.info,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -d -r1.5 -r1.6
--- tcoffee-10.6.info   24 Apr 2010 17:33:38 -  1.5
+++ tcoffee-10.6.info   20 Jul 2010 22:59:51 -  1.6
@@ -1,9 +1,9 @@
 Package: tcoffee
-Version: 8.69
+Version: 8.91
 Revision: 1001
 Distribution: 10.6
 Source: http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_%v.tar.gz
-Source-MD5: b00629c5f08e329d9d7524b6380567c5
+Source-MD5: 9fc62ebe4a15133ca26f99b85ab2b308
 Sourcedirectory: T-COFFEE_distribution_Version_%v
 Depends: soap-lite-pm588
 BuildDepends: fink (= 0.24.12) 

Index: tcoffee-10.4.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/tcoffee-10.4.info,v
retrieving revision 1.20
retrieving revision 1.21
diff -u -d -r1.20 -r1.21
--- tcoffee-10.4.info   24 Apr 2010 17:33:38 -  1.20
+++ tcoffee-10.4.info   20 Jul 2010 22:59:51 -  1.21
@@ -1,9 +1,9 @@
 Package: tcoffee
-Version: 8.69
+Version: 8.91
 Revision: 1
 Distribution: 10.4
 Source: http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_%v.tar.gz
-Source-MD5: b00629c5f08e329d9d7524b6380567c5
+Source-MD5: 9fc62ebe4a15133ca26f99b85ab2b308
 Sourcedirectory: T-COFFEE_distribution_Version_%v
 Depends: soap-lite-pm588
 BuildDepends: fink (= 0.24.12) 

Index: tcoffee-10.5.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/tcoffee-10.5.info,v
retrieving revision 1.21
retrieving revision 1.22
diff -u -d -r1.21 -r1.22
--- tcoffee-10.5.info   24 Apr 2010 17:33:38 -  1.21
+++ tcoffee-10.5.info   20 Jul 2010 22:59:51 -  1.22
@@ -1,9 +1,9 @@
 Package: tcoffee
-Version: 8.69
+Version: 8.91
 Revision: 101
 Distribution: 10.5
 Source: http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_%v.tar.gz
-Source-MD5: b00629c5f08e329d9d7524b6380567c5
+Source-MD5: 9fc62ebe4a15133ca26f99b85ab2b308
 Sourcedirectory: T-COFFEE_distribution_Version_%v
 Depends: soap-lite-pm588
 BuildDepends: fink (= 0.24.12) 


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods software-license-pm.info, 1.3, 1.4 soap-lite-pm.info, 1.20, 1.21

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv27158

Modified Files:
software-license-pm.info soap-lite-pm.info 
Log Message:
new upstream versions

Index: soap-lite-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/soap-lite-pm.info,v
retrieving revision 1.20
retrieving revision 1.21
diff -u -d -r1.20 -r1.21
--- soap-lite-pm.info   5 Jun 2010 21:03:23 -   1.20
+++ soap-lite-pm.info   19 Jun 2010 04:11:12 -  1.21
@@ -1,7 +1,7 @@
 Info2: 
 
 Package: soap-lite-pm%type_pkg[perl]
-version: 0.711
+version: 0.712
 Revision: 1
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
 Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5, (%type_pkg[perl] = 
5100) 10.5, (%type_pkg[perl] = 5100) 10.6
@@ -10,9 +10,10 @@
  perl%type_pkg[perl]-core, 
  libwww-pm%type_pkg[perl], 
  mime-lite-pm,
+ class-inspector-pm%type_pkg[perl],
  constant-pm (= 1.14-1),
  mime-tools-pm%type_pkg[perl] (= 6.106-1), 
- compress-zlib-pm%type_pkg[perl], 
+ io-compress-pm%type_pkg[perl], 
  xml-parser-pm%type_pkg[perl], 
  mime-base64-pm%type_pkg[perl], 
  uri-pm%type_pkg[perl], 
@@ -24,11 +25,12 @@
 BuildDepends: 
  fink (= 0.24.12), 
  test-harness-pm%type_pkg[perl], 
- libwww-pm%type_pkg[perl], 
+ libwww-pm%type_pkg[perl],
+ class-inspector-pm%type_pkg[perl],
  mime-lite-pm,
  constant-pm (= 1.14-1),
  mime-tools-pm%type_pkg[perl] (= 6.106-1), 
- compress-zlib-pm%type_pkg[perl], 
+ io-compress-pm%type_pkg[perl], 
  xml-parser-pm%type_pkg[perl], 
  mime-base64-pm%type_pkg[perl], 
  uri-pm%type_pkg[perl], 
@@ -44,7 +46,7 @@
 
 ###
 Source: mirror:cpan:authors/id/M/MK/MKUTTER/SOAP-Lite-%v.tar.gz
-Source-MD5: 8b833aedcb8256320438a7b163c3e2a9
+Source-MD5: fd71a0c0feff85f670ab4b2e571652a8
 ###
 PatchScript: 
   ### Fix user interaction

Index: software-license-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/software-license-pm.info,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- software-license-pm.info22 May 2010 11:38:39 -  1.3
+++ software-license-pm.info19 Jun 2010 04:11:12 -  1.4
@@ -1,6 +1,6 @@
 Info2: 
 Package: software-license-pm%type_pkg[perl]
-Version: 0.015
+Version: 0.101620
 Revision: 1
 Description: Common open source software licenses
 Architecture: (%type_pkg[perl] = 581) powerpc
@@ -11,20 +11,23 @@
 
 # Dependencies.
 Depends: 
-   data-section-pm%type_pkg[perl],
fink (= 0.28.0-1),
-   perl%type_pkg[perl]-core,
-   sub-install-pm%type_pkg[perl],
-   text-template-pm
+   perl%type_pkg[perl]-core
 
 BuildDepends: 
fink (= 0.28.0-1),
+   extutils-makemaker-pm%type_pkg[perl] (=6.31),
+   mro-compat-pm%type_pkg[perl],
+   data-section-pm%type_pkg[perl],
+   sub-exporter-pm%type_pkg[perl],
+   sub-install-pm%type_pkg[perl],
+   text-template-pm,
perl%type_pkg[perl]-core
 
 
 # Unpack Phase:
 Source: mirror:cpan:authors/id/R/RJ/RJBS/Software-License-%v.tar.gz
-Source-MD5: 56e1711262f89a971a2fa26d865a20fc
+Source-MD5: f42a1167154ddd8f598ed759b4702ad6
 
 # Install Phase:
 InstallScript: 


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[cvs] dists/10.4/unstable/main/finkinfo/sci massxpert.info,1.12,1.13

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv32436

Modified Files:
massxpert.info 
Log Message:
fix md5 of massxpert.pdf

Index: massxpert.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/massxpert.info,v
retrieving revision 1.12
retrieving revision 1.13
diff -u -d -r1.12 -r1.13
--- massxpert.info  12 May 2010 02:23:09 -  1.12
+++ massxpert.info  15 Jun 2010 23:11:14 -  1.13
@@ -6,8 +6,8 @@
 
 Source: http://download.tuxfamily.org/massxpert/source/massxpert-%v.tar.gz
 Source-MD5: e51cf36f01e78cf07a71e33a8e0f8ad7
-Source2-MD5: fa0a17b2c4beba4cd37dc56889e2e212
 Source2: http://massxpert.org/userman/pdf/massxpert.pdf
+Source2-MD5: 1e7bdc9fbf9a1b1e23df48c0590f13dc
 
 Depends: 
  fontconfig2-shlibs, 


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods gd-textutil-pm.info, 1.7, 1.8

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv29032

Modified Files:
gd-textutil-pm.info 
Log Message:
take over, add -pm5100

Index: gd-textutil-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/gd-textutil-pm.info,v
retrieving revision 1.7
retrieving revision 1.8
diff -u -d -r1.7 -r1.8
--- gd-textutil-pm.info 23 Aug 2009 04:23:28 -  1.7
+++ gd-textutil-pm.info 12 Jun 2010 11:07:04 -  1.8
@@ -4,11 +4,11 @@
 Version: 0.86
 Revision: 13
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
-Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5
+Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5, (%type_pkg[perl] = 
5100) 10.5, (%type_pkg[perl] = 5100) 10.6
 Description: Perl package for text utilities of GD
-Type: perl (5.8.1 5.8.4 5.8.6 5.8.8)
+Type: perl (5.8.1 5.8.4 5.8.6 5.8.8 5.10.0)
 License: Artistic
-Maintainer: None fink-de...@lists.sourceforge.net
+Maintainer: Koen van der Drift drift...@users.sourceforge.net
 
 # Dependencies:
 Depends: gd-pm%type_pkg[perl] (= 2.06-7)
@@ -44,6 +44,8 @@
 Wrap a long string between a right and left margin, starting at a
 certain y coordinate. Layout the text flush left, flush right,
 center, or justified.
+
+Previous Maintainer: None fink-de...@lists.sourceforge.net
 
 Homepage: http://search.cpan.org/dist/GDTextUtil
 


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods data-serializer-pm.info, 1.17, 1.18

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv29126

Modified Files:
data-serializer-pm.info 
Log Message:
fix package

Index: data-serializer-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/data-serializer-pm.info,v
retrieving revision 1.17
retrieving revision 1.18
diff -u -d -r1.17 -r1.18
--- data-serializer-pm.info 9 Jun 2010 10:38:25 -   1.17
+++ data-serializer-pm.info 12 Jun 2010 11:07:32 -  1.18
@@ -1,14 +1,18 @@
 Info2: 
 Package: data-serializer-pm%type_pkg[perl]
 Version: 0.49
-Revision: 1
+Revision: 2
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
 Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5, (%type_pkg[perl] = 
5100) 10.5, (%type_pkg[perl] = 5100) 10.6
 
 BuildDepends: 
  perl%type_pkg[perl]-core, 
- fink (= 0.24.12), 
- module-build-pm%type_pkg[perl] (= 0.2808)
+ fink (= 0.24.12),
+ config-general-pm,
+ digest-sha-pm%type_pkg[perl],
+ json-pm%type_pkg[perl],
+ json-xs-pm%type_pkg[perl],
+ yaml-pm
 
 
 Source: mirror:cpan:authors/id/N/NE/NEELY/Data-Serializer-%v.tar.gz
@@ -17,9 +21,7 @@
 Conflicts: data-serializer-pm (= 0.42-1), data-serializer-pm%type_pkg[perl]
 
 Depends: 
- perl%type_pkg[perl]-core,
- config-general-pm,
- digest-sha-pm%type_pkg[perl]
+ perl%type_pkg[perl]-core
 
 
 Type: perl (5.8.1 5.8.6 5.8.8 5.10.0)
@@ -29,22 +31,6 @@
 DocFiles: Changes README MANIFEST INSTALL
 Description: Perl modules that serialize data structures
 
-CompileScript: 
-#!/bin/sh -ex
-  exec 21
-  perlversion=%type_raw[perl]
-  eval `perl$perlversion -V:archname`
-  perl$perlversion Build.PL \
---install_path arch=%i/lib/perl5/$perlversion/$archname \
---install_path bin=%i/bin \
---install_path bindoc=%i/lib/perl5/$perlversion/man/man1 \
---install_path lib=%i/lib/perl5/$perlversion \
---install_path libdoc=%i/lib/perl5/$perlversion/man/man3 \
---install_path script=%i/bin
-  ./Build
-  ./Build test
-
-
 NoPerlTests: True
 
 InstallScript: 


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods data-stag-pm.info, NONE, 1.1

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv29645

Added Files:
data-stag-pm.info 
Log Message:
new package

--- NEW FILE: data-stag-pm.info ---
Info2: 
Package: data-stag-pm%type_pkg[perl]
Version: 0.11
Revision: 1
Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5, (%type_pkg[perl] = 
5100) 10.5, (%type_pkg[perl] = 5100) 10.6

BuildDepends: 
 perl%type_pkg[perl]-core, 
 fink (= 0.24.12) 


Source: mirror:cpan:authors/id/C/CM/CMUNGALL/Data-Stag-%v.tar.gz

Depends: 
 perl%type_pkg[perl]-core,
 gd-pm%type_pkg[perl],
 tk-pm%type_pkg[perl],
 xml-libxslt-pm%type_pkg[perl],
 libxml-pm%type_pkg[perl],
 graph-pm


Type: perl (5.8.1 5.8.6 5.8.8 5.10.0)
UpdatePOD: True

Source-MD5: 6bfa3cf196b69180d04602e956f8b626
Description: Structured Tags datastructures

InstallScript: 
#!/bin/sh -ev
 %{default_script}
 mv %i/share/man %i/lib/perl5/%type_raw[perl]


Splitoff: 
 Package: %N-bin
 Depends: %N (= %v-%r)
 Files: bin
 DocFiles: Changes INSTALL README


DocFiles: Changes INSTALL README

DescDetail: 
 This module is for manipulating data as hierarchical tag/value pairs
 (Structured TAGs or Simple Tree AGgreggates). These datastructures can
 be represented as nested arrays, which have the advantage of being
 native to perl.


License: Artistic
Maintainer: Koen van der Drift drift...@users.sourceforge.net
Homepage: http://search.cpan.org/dist/Data-Stag/


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods insilicospectro-pm.info, 1.30, 1.31

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv12526

Modified Files:
insilicospectro-pm.info 
Log Message:
add pm5100, fix depends

Index: insilicospectro-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/insilicospectro-pm.info,v
retrieving revision 1.30
retrieving revision 1.31
diff -u -d -r1.30 -r1.31
--- insilicospectro-pm.info 23 Aug 2009 04:23:28 -  1.30
+++ insilicospectro-pm.info 12 Jun 2010 12:17:58 -  1.31
@@ -1,9 +1,9 @@
 Info2: 
 Package: insilicospectro-pm%type_pkg[perl]
 Version: 1.3.24
-Revision: 1
+Revision: 2
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
-Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5
+Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5, (%type_pkg[perl] = 
5100) 10.5, (%type_pkg[perl] = 5100) 10.6
 
 Source: mirror:cpan:authors/id/A/AL/ALEXMASS/InSilicoSpectro-%v.tar.gz
 Source-MD5: 1bb59f96ad6cb32a2e23b731e1db0c26
@@ -13,6 +13,7 @@
  archive-zip-pm%type_pkg[perl],
  compress-zlib-pm%type_pkg[perl],
  data-serializer-pm%type_pkg[perl],
+ data-stag-pm%type_pkg[perl],
  digest-pm%type_pkg[perl], 
  file-find-rule-pm,
  file-temp-pm%type_pkg[perl],
@@ -30,7 +31,7 @@
  xml-semanticdiff-pm
 
 
-Type: perl (5.8.1 5.8.6 5.8.8)
+Type: perl (5.8.1 5.8.6 5.8.8 5.10.0)
 UpdatePOD: True
 
 PatchScript: 
@@ -57,11 +58,11 @@
 
 Description: Open source Perl library for proteomics
 DescDetail: 
-InSilicoSpectro is a proteomics Perl open-source project intended to
-cover common operations in mass list file format conversions, protein
-sequence digestion, theoretical mass spectra computations, theoretical
-and experimental MS data matching, text/graphic display, peptide
-retention time predictions, etc.
+ InSilicoSpectro is a proteomics Perl open-source project intended to
+ cover common operations in mass list file format conversions, protein
+ sequence digestion, theoretical mass spectra computations, theoretical
+ and experimental MS data matching, text/graphic display, peptide
+ retention time predictions, etc.
 
 
 DescPort: 


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods gd-graph-pm.info, 1.8, 1.9

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv16610

Modified Files:
gd-graph-pm.info 
Log Message:
take over from 'none', new upstream, add -pm5100 variant

Index: gd-graph-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/gd-graph-pm.info,v
retrieving revision 1.8
retrieving revision 1.9
diff -u -d -r1.8 -r1.9
--- gd-graph-pm.info23 Aug 2009 04:23:28 -  1.8
+++ gd-graph-pm.info10 Jun 2010 21:02:11 -  1.9
@@ -1,22 +1,31 @@
 Info2: 
 Package: gd-graph-pm%type_pkg[perl]
-Version: 1.43
-Revision: 16
+Version: 1.44
+Revision: 1
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
-Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5
+Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5, (%type_pkg[perl] = 
5100) 10.5, (%type_pkg[perl] = 5100) 10.6
 Description: Perl package to generate charts using GD
-Type: perl (5.8.1 5.8.4 5.8.6 5.8.8)
+Type: perl (5.8.1 5.8.4 5.8.6 5.8.8 5.10.0)
 License: Artistic
-Maintainer: None fink-de...@lists.sourceforge.net
+Maintainer: Koen van der Drift drift...@users.sourceforge.net
 
 # Dependencies:
-Depends: gd-pm%type_pkg[perl] (= 2.06-7), gd-textutil-pm%type_pkg[perl] (= 
0.85-2), perl%type_pkg[perl]-core
-BuildDepends: perl%type_pkg[perl]-core
+Depends: 
+ gd-pm%type_pkg[perl] (= 2.06-7), 
+ gd-textutil-pm%type_pkg[perl] (= 0.85-2),
+ perl%type_pkg[perl]-core
+
+
+BuildDepends: 
+ fink (= 0.24.12), 
+ perl%type_pkg[perl]-core
+
+
 Replaces: gd-graph-pm (= 1.41-1)
 
 # Unpack Phase:
-Source: mirror:cpan:authors/id/MVERB/GDGraph-%v.tar.gz
-Source-MD5: cf546f2de827a56458afe288ab0807f2  
+Source: mirror:cpan:authors/id/B/BW/BWARFIELD/GDGraph-%v.tar.gz
+Source-MD5: a8a4ab62741258803b5744cb8882e68c  
 
 # Install Phase:
 UpdatePOD: true
@@ -24,12 +33,20 @@
   %{default_script}
   mv %i/share/man %i/lib/perl5/%type_raw[perl]
 
-DocFiles: CHANGES README
+DocFiles: CHANGES README Dustismo.LICENSE
 
 # Additional Data:
 DescDetail: 
 This is GDGraph, a package to generate charts, using Lincoln Stein's
 GD.pm. See the documentation for some history and more information.
+
+Previous maintainer: None fink-de...@lists.sourceforge.net
 
+
+DescPackaging: 
+ Making the samples during build is skipped because it requires
+ Imagemagick, which pulls in lots of dependencies.
+
+
 Homepage: http://search.cpan.org/dist/GDGraph
 


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods data-serializer-pm.info, 1.16, 1.17

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv18249

Modified Files:
data-serializer-pm.info 
Log Message:
add -5100 variant

Index: data-serializer-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/data-serializer-pm.info,v
retrieving revision 1.16
retrieving revision 1.17
diff -u -d -r1.16 -r1.17
--- data-serializer-pm.info 23 Aug 2009 04:23:28 -  1.16
+++ data-serializer-pm.info 9 Jun 2010 10:38:25 -   1.17
@@ -3,8 +3,13 @@
 Version: 0.49
 Revision: 1
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
-Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5
-BuildDepends: perl%type_pkg[perl]-core, fink (= 0.20.1-1), 
module-build-pm%type_pkg[perl] (= 0.2808)
+Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5, (%type_pkg[perl] = 
5100) 10.5, (%type_pkg[perl] = 5100) 10.6
+
+BuildDepends: 
+ perl%type_pkg[perl]-core, 
+ fink (= 0.24.12), 
+ module-build-pm%type_pkg[perl] (= 0.2808)
+
 
 Source: mirror:cpan:authors/id/N/NE/NEELY/Data-Serializer-%v.tar.gz
 
@@ -17,7 +22,7 @@
  digest-sha-pm%type_pkg[perl]
 
 
-Type: perl (5.8.1 5.8.6 5.8.8)
+Type: perl (5.8.1 5.8.6 5.8.8 5.10.0)
 UpdatePOD: True
 
 Source-MD5: 31a8c3f5ab573a840b4314d327bc534a


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods tap-parser-pm.info, 1.4, NONE tap-parser-pm.patch, 1.1, NONE

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv4360

Removed Files:
tap-parser-pm.info tap-parser-pm.patch 
Log Message:
removing tap-parser-pm

--- tap-parser-pm.info DELETED ---

--- tap-parser-pm.patch DELETED ---


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods bioperl-pm.info, 1.15, 1.16

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv14034

Modified Files:
bioperl-pm.info 
Log Message:
add -5100 variant

Index: bioperl-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/bioperl-pm.info,v
retrieving revision 1.15
retrieving revision 1.16
diff -u -d -r1.15 -r1.16
--- bioperl-pm.info 29 Sep 2009 22:27:44 -  1.15
+++ bioperl-pm.info 8 Jun 2010 01:55:17 -   1.16
@@ -3,7 +3,7 @@
 Version: 1.6.1
 Revision: 1
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
-Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5
+Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5, (%type_pkg[perl] = 
5100) 10.5, (%type_pkg[perl] = 5100) 10.6
 BuildDepends: 
  perl%type_pkg[perl]-core, 
  fink (= 0.24.12), 
@@ -41,7 +41,7 @@
 Replaces: bioperl-pm%type_pkg[perl] (= 1.6)
 Conflicts: bioperl-pm%type_pkg[perl] (= 1.6)
 
-Type: perl (5.8.1 5.8.6 5.8.8)
+Type: perl (5.8.1 5.8.6 5.8.8 5.10.0)
 UpdatePOD: True
 NoPerlTests: True
 PatchFile: %{ni}.patch


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods gd-pm.info, 1.8, 1.9

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv7710

Modified Files:
gd-pm.info 
Log Message:
new upstream, add -pm5100, take over maintainership

Index: gd-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/gd-pm.info,v
retrieving revision 1.8
retrieving revision 1.9
diff -u -d -r1.8 -r1.9
--- gd-pm.info  23 Aug 2009 04:23:28 -  1.8
+++ gd-pm.info  6 Jun 2010 19:24:07 -   1.9
@@ -1,47 +1,72 @@
 Info2: 
 Package: gd-pm%type_pkg[perl]
-Version: 2.30
-Revision: 2
+Version: 2.45
+Revision: 1
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
-Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5
+Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5, (%type_pkg[perl] = 
5100) 10.5, (%type_pkg[perl] = 5100) 10.6
 Replaces: gd-pm (= 2.06-5)
 Description: Perl interface to the GD graphics library
-Type: perl (5.8.1 5.8.4 5.8.6 5.8.8)
+Type: perl (5.8.1 5.8.4 5.8.6 5.8.8 5.10.0)
 License: Artistic
-Maintainer: Michael Baudis mbau...@gmail.com
+Maintainer: Koen van der Drift drift...@users.sourceforge.net
 
 # Dependencies:
-Depends: gd2-shlibs (= 2.0.28-1), perl%type_pkg[perl]-core, libjpeg-shlibs, 
libpng3-shlibs, x11-shlibs
-BuildDepends: gd2 (= 2.0.28-1), fink (= 0.20.1-1), libjpeg, libpng3, x11-dev
+Depends: 
+ gd2-shlibs (= 2.0.28-1), 
+ perl%type_pkg[perl]-core, 
+ libjpeg8-shlibs, 
+ libpng14-shlibs, 
+ x11-shlibs
+
 
-# Unpack Phase:
-Source: mirror:cpan:authors/id/LDS/GD-%v.tar.gz
-Source-MD5: cbc232526c0b348582f386abea802fbc
+BuildDepends: 
+ gd2 (= 2.0.28-1), 
+ fink (= 0.24-12), 
+ libjpeg8, 
+ libpng14, 
+ x11-dev
+
 
-# Compile Phase:
-ConfigureParams: -options JPEG,FT,XPM,PNG -lib_gd_path %p/lib -lib_ft_path 
/usr/X11R6/lib -lib_png_path %p/lib -lib_jpeg_path %p/lib -lib_xpm_path 
/usr/X11R6/lib -lib_zlib_path /usr/lib
+# Unpack Phase:
+Source: mirror:cpan:authors/id/L/LD/LDS/GD-%v.tar.gz
+Source-MD5: 430b15e74eb6287519c403c4772dc1e3
 
 InstallScript: 
   %{default_script}
 
   mkdir -p %i/share/%n/examples
-  mv %i/bin/bdf2gdfont.pl %i/share/%n/examples/
+  mv demos qd.pl %i/bin/bdf2gdfont.pl %i/share/%n/examples/
 
   mv %i/share/man %i/lib/perl5/%type_raw[perl]
 
 
-NoPerlTests: True
-DescPort: 
- The tests in make test all fail, yet the demo programs appear to run
- fine.  Hopefully this means that the problem is with the test suite.
-
-
 # Install Phase:
 UpdatePOD: true
-DocFiles: ChangeLog MANIFEST README
+DocFiles: ChangeLog MANIFEST README LICENSE
 
 # Additional Data:
 Homepage: http://search.cpan.org/dist/GD/
 
+DescDetail: 
+ This is a autoloadable interface module for libgd, a popular library
+ for creating and manipulating PNG files.  With this library you can
+ create PNG images on the fly or modify existing files.  Features
+ include:
+
+ a.  lines, polygons, rectangles and arcs, both filled and unfilled
+ b.  flood fills
+ c.  the use of arbitrary images as brushes and as tiled fill patterns
+ d.  line styling (dashed lines and the like)
+ e.  horizontal and vertical text rendering
+ f.  support for transparency and interlacing
+ g.  support for TrueType font rendering, via libfreetype.
+ h.  support for spline curves, via GD::Polyline
+ i.  support for symbolic font names, such as helvetica:italic
+ j.  support for symbolic color names, such as green, via GD::Simple
+ k.  produces output in png, gif, jpeg and xbm format
+ l.  produces output in svg format via GD::SVG.
+
+ Previous maintainer: Michael Baudis mbau...@gmail.com
+
 # end of Info2 field:
 
\ No newline at end of file


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods gd-svg-pm.info, 1.11, 1.12

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv9033

Modified Files:
gd-svg-pm.info 
Log Message:
add -5100 variant

Index: gd-svg-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/gd-svg-pm.info,v
retrieving revision 1.11
retrieving revision 1.12
diff -u -d -r1.11 -r1.12
--- gd-svg-pm.info  23 Aug 2009 04:23:28 -  1.11
+++ gd-svg-pm.info  6 Jun 2010 19:28:34 -   1.12
@@ -3,11 +3,19 @@
 Version: 0.33
 Revision: 1
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
-Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5
+Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5, (%type_pkg[perl] = 
5100) 10.5, (%type_pkg[perl] = 5100) 10.6
 Source: mirror:cpan:authors/id/T/TW/TWH/GD-SVG-%v.tar.gz
-Depends: gd-pm%type_pkg[perl], svg-pm
+Depends: 
+ perl%type_pkg[perl]-core,
+ gd-pm%type_pkg[perl], 
+ svg-pm
+
+BuildDepends: 
+ perl%type_pkg[perl]-core, 
+ fink (= 0.24.12)
+
 Replaces: gd-svg-pm560, gd-svg-pm580, gd-svg-pm581, gd-svg-pm586
-Type: perl (5.8.1 5.8.6 5.8.8)
+Type: perl (5.8.1 5.8.6 5.8.8 5.10.0)
 UpdatePOD: True
 Source-MD5: 61279556f1ea76145152971eaaf2242f
 #NoPerlTests: YES
@@ -21,9 +29,9 @@
 DocFiles: Changes README MANIFEST
 Description: Perl module to create svg output from gd
 DescDetail: 
-GD::SVG seamlessly enables the scalable vector graphics (SVG) output
-from scripts written using GD.  It accomplishes this by translating GD
-functions into SVG functions.
+ GD::SVG seamlessly enables the scalable vector graphics (SVG) output
+ from scripts written using GD.  It accomplishes this by translating GD
+ functions into SVG functions.
 
 License: Artistic
 Maintainer: Koen van der Drift drift...@users.sourceforge.net


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods xml-node-pm.info, 1.7, 1.8

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv10107

Modified Files:
xml-node-pm.info 
Log Message:
add -5100 variant

Index: xml-node-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/xml-node-pm.info,v
retrieving revision 1.7
retrieving revision 1.8
diff -u -d -r1.7 -r1.8
--- xml-node-pm.info23 Aug 2009 04:23:29 -  1.7
+++ xml-node-pm.info6 Jun 2010 19:32:12 -   1.8
@@ -4,12 +4,12 @@
 Version: 0.11
 Revision: 4
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
-Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5
-BuildDepends: perl%type_pkg[perl]-core, fink (= 0.20.1-1)
+Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5, (%type_pkg[perl] = 
5100) 10.5, (%type_pkg[perl] = 5100) 10.6
+BuildDepends: perl%type_pkg[perl]-core, fink (= 0.24.12)
 Depends: xml-parser-pm%type_pkg[perl]
 Replaces: xml-node-pm560, xml-node-pm580, xml-node-pm581, xml-node-pm586
 Description: Perl extension interface to XML::Node
-Type: perl (5.8.1 5.8.6 5.8.8)
+Type: perl (5.8.1 5.8.6 5.8.8 5.10.0)
 
 # Unpack Phase:
 Source: mirror:cpan:authors/id/C/CH/CHANG-LIU/XML-Node-%v.tar.gz


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods class-c3-componentised-pm.info, 1.3, 1.4

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv11797

Modified Files:
class-c3-componentised-pm.info 
Log Message:
fix bdep

Index: class-c3-componentised-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/class-c3-componentised-pm.info,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- class-c3-componentised-pm.info  22 May 2010 21:51:33 -  1.3
+++ class-c3-componentised-pm.info  5 Jun 2010 15:30:23 -   1.4
@@ -1,7 +1,7 @@
 Info2: 
 Package: class-c3-componentised-pm%type_pkg[perl]
 Version: 1.0006
-Revision: 1
+Revision: 2
 Distribution: (%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5, 
(%type_pkg[perl] = 5100) 10.5, (%type_pkg[perl] = 5100) 10.6
 Type: perl (5.8.6 5.8.8 5.10.0)
 ###
@@ -13,6 +13,7 @@
 
 BuildDepends: 
   perl%type_pkg[perl]-core, test-simple-pm%type_pkg[perl],
+  mro-compat-pm%type_pkg[perl],
   test-exception-pm
 
 ###


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods digest-sha-pm.info, 1.8, 1.9 spreadsheet-parseexcel-pm.info, 1.17, 1.18 soap-lite-pm.info, 1.18, 1.19

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv30648

Modified Files:
digest-sha-pm.info spreadsheet-parseexcel-pm.info 
soap-lite-pm.info 
Log Message:
add -pm5100 variant

Index: soap-lite-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/soap-lite-pm.info,v
retrieving revision 1.18
retrieving revision 1.19
diff -u -d -r1.18 -r1.19
--- soap-lite-pm.info   28 Mar 2010 16:56:58 -  1.18
+++ soap-lite-pm.info   5 Jun 2010 20:49:32 -   1.19
@@ -4,7 +4,7 @@
 version: 0.711
 Revision: 1
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
-Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5
+Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5, (%type_pkg[perl] = 
5100) 10.5, (%type_pkg[perl] = 5100) 10.6
 ###
 Depends: 
  perl%type_pkg[perl]-core, 
@@ -53,7 +53,7 @@
   perl -pi.bak -e 's,SSL,NOSSL,g' Makefile.pl
 
 ###
-Type: perl (5.8.1 5.8.6 5.8.8)
+Type: perl (5.8.1 5.8.6 5.8.8 5.10.0)
 UpdatePOD: true
 NoPerlTests: true
 ###

Index: spreadsheet-parseexcel-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/spreadsheet-parseexcel-pm.info,v
retrieving revision 1.17
retrieving revision 1.18
diff -u -d -r1.17 -r1.18
--- spreadsheet-parseexcel-pm.info  3 Feb 2010 00:08:45 -   1.17
+++ spreadsheet-parseexcel-pm.info  5 Jun 2010 20:49:32 -   1.18
@@ -3,15 +3,21 @@
 Version: 0.57
 Revision: 1
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
-Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5
+Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5, (%type_pkg[perl] = 
5100) 10.5, (%type_pkg[perl] = 5100) 10.6
 Source: mirror:cpan:authors/id/J/JM/JMCNAMARA/Spreadsheet-ParseExcel-%v.tar.gz
 Source-MD5: d4eba5066a77e9f4736fe18a8dee3495
-Type: perl (5.8.1 5.8.4 5.8.6 5.8.8)
+Type: perl (5.8.1 5.8.4 5.8.6 5.8.8 5.10.0)
 UpdatePOD: true
 PatchScript: perl -0 
-pe's/^.*=head\d\s+(COPYRIGHT.*?)(=head\d.*|=cut.*|)$/$1/is' 
lib/Spreadsheet/ParseExcel.pm  COPYRIGHT
 Depends: 
- perl%type_pkg[perl]-core, ole-storagelite-pm (=0.08-1), 
unicode-map-pm%type_pkg[perl], spreadsheet-writeexcel-pm
+ perl%type_pkg[perl]-core, 
+ ole-storagelite-pm (=0.08-1), 
+ unicode-map-pm%type_pkg[perl], 
+ spreadsheet-writeexcel-pm
 
+
+BuildDepends: fink (= 0.24.12)
+
 Conflicts: %N-man ( 0.32)
 Replaces: %N-man ( 0.32)
 InstallScript: 

Index: digest-sha-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/digest-sha-pm.info,v
retrieving revision 1.8
retrieving revision 1.9
diff -u -d -r1.8 -r1.9
--- digest-sha-pm.info  20 Jan 2010 20:53:11 -  1.8
+++ digest-sha-pm.info  5 Jun 2010 20:49:32 -   1.9
@@ -3,12 +3,22 @@
 Version: 5.48
 Revision: 2
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
-Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5
+Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5, (%type_pkg[perl] = 
5100) 10.5, (%type_pkg[perl] = 5100) 10.6
 Description: Perl extension for SHA-1/224/256/384/512
-Type: perl (5.8.1 5.8.4 5.8.6 5.8.8)
+Type: perl (5.8.1 5.8.4 5.8.6 5.8.8 5.10.0)
+
+Depends: 
+ perl%type_pkg[perl]-core, 
+ digest-pm%type_pkg[perl]
+
+
+BuildDepends: 
+ digest-pm%type_pkg[perl], 
+ test-pod-coverage-pm, 
+ test-pod-pm, 
+ fink (= 0.24.12)
+
 
-Depends: perl%type_pkg[perl]-core, digest-pm%type_pkg[perl]
-BuildDepends: digest-pm%type_pkg[perl], test-pod-coverage-pm, test-pod-pm, 
fink (= 0.20.1-1)
 Replaces: digest-sha1-pm (= 2.02-1), %N-man
 Conflicts: %N-man
 


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods soap-lite-pm.info, 1.19, 1.20

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv1599

Modified Files:
soap-lite-pm.info 
Log Message:
update bdeps

Index: soap-lite-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/soap-lite-pm.info,v
retrieving revision 1.19
retrieving revision 1.20
diff -u -d -r1.19 -r1.20
--- soap-lite-pm.info   5 Jun 2010 20:49:32 -   1.19
+++ soap-lite-pm.info   5 Jun 2010 21:03:23 -   1.20
@@ -22,7 +22,7 @@
  version-pm%type_pkg[perl]
 
 BuildDepends: 
- fink (= 0.20.1-1), 
+ fink (= 0.24.12), 
  test-harness-pm%type_pkg[perl], 
  libwww-pm%type_pkg[perl], 
  mime-lite-pm,


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[cvs] dists/10.4/unstable/main/finkinfo/libs/pythonmods biopython-py.info, 1.15, 1.16

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/pythonmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv4454

Modified Files:
biopython-py.info 
Log Message:
new upstream

Index: biopython-py.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/pythonmods/biopython-py.info,v
retrieving revision 1.15
retrieving revision 1.16
diff -u -d -r1.15 -r1.16
--- biopython-py.info   28 Feb 2010 13:31:51 -  1.15
+++ biopython-py.info   28 May 2010 20:54:35 -  1.16
@@ -1,7 +1,7 @@
 Info2: 
 Package: biopython-py%type_pkg[python]
-Version: 1.53
-Revision: 2
+Version: 1.54
+Revision: 1
 Distribution: (%type_pkg[python] = 24) 10.4, (%type_pkg[python] = 24) 10.5
 Type: python (2.4 2.5 2.6)
 Depends: 
@@ -15,7 +15,7 @@
 BuildDepends: flex
 Replaces: python-biopython-py%type_pkg[python]
 Source: http://biopython.org/DIST/biopython-%v.tar.gz
-Source-MD5: df1004ec64b9b593c0e690c14a20667a
+Source-MD5: d4c4ce5a3e1bb401928ca3dc3d1b08cd
 
 #Patch: %{ni}.patch
 CompileScript: %p/bin/python%type_raw[python] setup.py build


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods algorithm-c3-pm.info, 1.3, 1.4

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv32443

Modified Files:
algorithm-c3-pm.info 
Log Message:
add missing bdep

Index: algorithm-c3-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/algorithm-c3-pm.info,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- algorithm-c3-pm.info22 May 2010 18:26:48 -  1.3
+++ algorithm-c3-pm.info23 May 2010 15:01:25 -  1.4
@@ -1,12 +1,12 @@
 Info2: 
 Package: algorithm-c3-pm%type_pkg[perl]
 Version: 0.08
-Revision: 1
+Revision: 2
 Distribution: (%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5, 
(%type_pkg[perl] = 5100) 10.5, (%type_pkg[perl] = 5100) 10.6
 Type: perl (5.8.6 5.8.8 5.10.0)
 ###
 Depends: perl%type_pkg[perl]-core
-BuildDepends: perl%type_pkg[perl]-core, test-simple-pm%type_pkg[perl]
+BuildDepends: perl%type_pkg[perl]-core, module-build-pm%type_pkg[perl], 
test-simple-pm%type_pkg[perl]
 ###
 Source: mirror:cpan:authors/id/F/FL/FLORA/Algorithm-C3-%v.tar.gz
 Source-MD5: 07afb08682125c875b80c315d99f6f95


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods software-license-pm.info, 1.2, 1.3 data-section-pm.info, 1.3, 1.4 extutils-manifest-pm.info, 1.1, 1.2 extutils-parsexs-pm.info, 1.6, 1.7

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv22720

Modified Files:
software-license-pm.info data-section-pm.info 
extutils-manifest-pm.info extutils-parsexs-pm.info 
Log Message:
fix maintainer email

Index: data-section-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/data-section-pm.info,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- data-section-pm.info28 Mar 2010 15:54:00 -  1.3
+++ data-section-pm.info22 May 2010 11:38:39 -  1.4
@@ -7,7 +7,7 @@
 Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 586) 10.4, 
(%type_pkg[perl] = 586) 10.5, (%type_pkg[perl] = 5100) 10.5, (%type_pkg[perl] = 
5100) 10.6
 Type: perl (5.8.1 5.8.6 5.8.8 5.10.0)
 License: Artistic/GPL
-Maintainer: Koen van der Drift drift...@lists.sourceforge.net
+Maintainer: Koen van der Drift drift...@users.sourceforge.net
 
 Depends: 
fink (= 0.28.0-1),

Index: extutils-manifest-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/extutils-manifest-pm.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- extutils-manifest-pm.info   23 Dec 2009 17:02:28 -  1.1
+++ extutils-manifest-pm.info   22 May 2010 11:38:39 -  1.2
@@ -4,7 +4,7 @@
 Description: Utilities to write and check a MANIFEST file
 Type: perl
 License: Artistic
-Maintainer: Koen van der Drift drift...@lists.sourceforge.net
+Maintainer: Koen van der Drift drift...@users.sourceforge.net
 
 # Dependencies.
 

Index: software-license-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/software-license-pm.info,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -d -r1.2 -r1.3
--- software-license-pm.info28 Mar 2010 17:00:36 -  1.2
+++ software-license-pm.info22 May 2010 11:38:39 -  1.3
@@ -7,7 +7,7 @@
 Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 586) 10.4, 
(%type_pkg[perl] = 586) 10.5, (%type_pkg[perl] = 5100) 10.5, (%type_pkg[perl] = 
5100) 10.6
 Type: perl (5.8.1 5.8.6 5.8.8 5.10.0)
 License: Artistic/GPL
-Maintainer: Koen van der Drift drift...@lists.sourceforge.net
+Maintainer: Koen van der Drift drift...@users.sourceforge.net
 
 # Dependencies.
 Depends: 

Index: extutils-parsexs-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/extutils-parsexs-pm.info,v
retrieving revision 1.6
retrieving revision 1.7
diff -u -d -r1.6 -r1.7
--- extutils-parsexs-pm.info28 Mar 2010 15:56:22 -  1.6
+++ extutils-parsexs-pm.info22 May 2010 11:38:39 -  1.7
@@ -4,7 +4,7 @@
 Description: Converts Perl XS code into C code
 Type: perl
 License: Artistic/GPL
-Maintainer: Koen van der Drift drift...@lists.sourceforge.net
+Maintainer: Koen van der Drift drift...@users.sourceforge.net
 
 # Dependencies.
 Depends: extutils-cbuilder-pm


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods algorithm-c3-pm.info, 1.2, 1.3 sub-name-pm.info, 1.3, 1.4 mro-compat-pm.info, 1.3, 1.4 class-c3-pm.info, 1.2, 1.3 class-c3-xs-pm.info, 1.2, 1.3

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv17334

Modified Files:
algorithm-c3-pm.info sub-name-pm.info mro-compat-pm.info 
class-c3-pm.info class-c3-xs-pm.info 
Log Message:
taking over maintainership, new upstream, added -5100 variant

Index: sub-name-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/sub-name-pm.info,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- sub-name-pm.info23 Aug 2009 04:23:29 -  1.3
+++ sub-name-pm.info22 May 2010 18:26:48 -  1.4
@@ -2,7 +2,8 @@
 Package: sub-name-pm%type_pkg[perl]
 Version: 0.04
 Revision: 1
-Distribution: (%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5
+Distribution: (%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5, 
(%type_pkg[perl] = 5100) 10.5, (%type_pkg[perl] = 5100) 10.6
+Type: perl (5.8.6 5.8.8 5.10.0)
 ###
 Depends: perl%type_pkg[perl]-core
 BuildDepends: perl%type_pkg[perl]-core
@@ -10,7 +11,6 @@
 Source: mirror:cpan:authors/id/X/XM/XMATH/Sub-Name-%v.tar.gz
 Source-MD5: bde2bacba0c701f249135ada3c6cf699
 ###
-Type: perl (5.8.6 5.8.8)
 UpdatePOD: true
 ###
 InstallScript: 
@@ -29,9 +29,11 @@
   Assigns a new name to referenced sub.  If package specification is
   omitted in the name, then the current package is used.  The return
   value is the sub.
+  
+  Previous maintainer: degraw deg...@users.sourceforge.net
 
 ###
 License: Artistic/GPL
-Maintainer: degraw deg...@users.sourceforge.net
+Maintainer: Koen van der Drift drift...@users.sourceforge.net
 Homepage: http://search.cpan.org/dist/Sub-Name
 

Index: class-c3-xs-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/class-c3-xs-pm.info,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -d -r1.2 -r1.3
--- class-c3-xs-pm.info 23 Aug 2009 04:23:28 -  1.2
+++ class-c3-xs-pm.info 22 May 2010 18:26:48 -  1.3
@@ -1,16 +1,16 @@
 Info2: 
 Package: class-c3-xs-pm%type_pkg[perl]
-Version: 0.08
+Version: 0.13
 Revision: 1
-Distribution: (%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5
+Distribution: (%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5, 
(%type_pkg[perl] = 5100) 10.5, (%type_pkg[perl] = 5100) 10.6
+Type: perl (5.8.6 5.8.8 5.10.0)
 ###
 Depends: perl%type_pkg[perl]-core
 BuildDepends: perl%type_pkg[perl]-core, test-simple-pm%type_pkg[perl]
+
+Source: mirror:cpan:authors/id/F/FL/FLORA/Class-C3-XS-%v.tar.gz
+Source-MD5: 92a48fe74206b803315749de29c30b88
 ###
-Source: mirror:cpan:authors/id/B/BL/BLBLACK/Class-C3-XS-%v.tar.gz
-Source-MD5: bb19c19a2660f89765765c6c029184f1
-###
-Type: perl (5.8.6 5.8.8)
 UpdatePOD: true
 ###
 InstallScript: 
@@ -26,9 +26,11 @@
   higher.  The main Class::C3 package will use this package automatically
   if it can find it.  Do not use this package directly, use Class::C3
   instead.
+  
+  Previous maintainer: degraw deg...@users.sourceforge.net
 
 ###
 License: Artistic/GPL
-Maintainer: degraw deg...@users.sourceforge.net
+Maintainer: Koen van der Drift drift...@users.sourceforge.net
 Homepage: http://search.cpan.org/dist/Class-C3-XS
 

Index: mro-compat-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/mro-compat-pm.info,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- mro-compat-pm.info  23 Aug 2009 04:23:29 -  1.3
+++ mro-compat-pm.info  22 May 2010 18:26:48 -  1.4
@@ -1,8 +1,9 @@
 Info2: 
 Package: mro-compat-pm%type_pkg[perl]
-Version: 0.09
+Version: 0.11
 Revision: 1
-Distribution: (%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5
+Distribution: (%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5, 
(%type_pkg[perl] = 5100) 10.5, (%type_pkg[perl] = 5100) 10.6
+Type: perl (5.8.6 5.8.8 5.10.0)
 ###
 Depends: perl%type_pkg[perl]-core, class-c3-pm%type_pkg[perl] (= 0.19-1)
 BuildDepends: 
@@ -10,10 +11,9 @@
   class-c3-xs-pm%type_pkg[perl] (= 0.08-1)
 
 ###
-Source: mirror:cpan:authors/id/B/BL/BLBLACK/MRO-Compat-%v.tar.gz
-Source-MD5: 49199d3a6a984c45ec24ae6fcaa8d9fd
+Source: mirror:cpan:authors/id/F/FL/FLORA/MRO-Compat-%v.tar.gz
+Source-MD5: 462b68631d5bef8c807190f1c5c17306
 ###
-Type: perl (5.8.6 5.8.8)
 UpdatePOD: true
 ###
 InstallScript: 
@@ -30,9 +30,11 @@
 
   This module provides those interfaces for earlier versions of Perl (back
   to 5.6.0 anyways).
+  
+  Previous maintainer: degraw deg...@users.sourceforge.net
 
 ###
 License: Artistic/GPL
-Maintainer: degraw deg...@users.sourceforge.net
+Maintainer: Koen van der Drift drift...@users.sourceforge.net
 Homepage: http://search.cpan.org/dist/MRO-Compat
 

Index: algorithm-c3-pm.info

[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods class-c3-componentised-pm.info, 1.2, 1.3

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv15168

Modified Files:
class-c3-componentised-pm.info 
Log Message:
new upstream, added -5100, taking over maintainership

Index: class-c3-componentised-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/class-c3-componentised-pm.info,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -d -r1.2 -r1.3
--- class-c3-componentised-pm.info  23 Aug 2009 04:23:28 -  1.2
+++ class-c3-componentised-pm.info  22 May 2010 21:51:33 -  1.3
@@ -1,12 +1,15 @@
 Info2: 
 Package: class-c3-componentised-pm%type_pkg[perl]
-Version: 1.0003
+Version: 1.0006
 Revision: 1
-Distribution: (%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5
+Distribution: (%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5, 
(%type_pkg[perl] = 5100) 10.5, (%type_pkg[perl] = 5100) 10.6
+Type: perl (5.8.6 5.8.8 5.10.0)
 ###
 Depends: 
-  perl%type_pkg[perl]-core, class-c3-pm%type_pkg[perl],
-  class-inspector-pm%type_pkg[perl]
+  perl%type_pkg[perl]-core, 
+  class-c3-pm%type_pkg[perl],
+  class-inspector-pm%type_pkg[perl],
+  extutils-makemaker-pm%type_pkg[perl] (= 6.42)
 
 BuildDepends: 
   perl%type_pkg[perl]-core, test-simple-pm%type_pkg[perl],
@@ -14,9 +17,8 @@
 
 ###
 Source: mirror:cpan:authors/id/A/AS/ASH/Class-C3-Componentised-%v.tar.gz
-Source-MD5: f388783d0ea20f507e61f35677041a3e
+Source-MD5: daea1eb95cdeda8752b472e5fe6a4c86
 ###
-Type: perl (5.8.6 5.8.8)
 UpdatePOD: true
 ###
 InstallScript: 
@@ -29,9 +31,11 @@
 Description: Class::C3::Componentised
 DescDetail: 
   Load mix-ins or components to your C3-based class.
+  
+  Previous maintainer: degraw deg...@users.sourceforge.net
 
 ###
 License: Artistic/GPL
-Maintainer: degraw deg...@users.sourceforge.net
+Maintainer: Koen van der Drift drift...@users.sourceforge.net
 Homepage: http://search.cpan.org/dist/Class-C3-Componentised
 


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods bioperl-run-pm.info, 1.9, 1.10

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv17178

Modified Files:
bioperl-run-pm.info 
Log Message:
update to depend on versioned ipc-run-pm

Index: bioperl-run-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/bioperl-run-pm.info,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -d -r1.9 -r1.10
--- bioperl-run-pm.info 23 Aug 2009 04:23:27 -  1.9
+++ bioperl-run-pm.info 20 May 2010 10:26:23 -  1.10
@@ -2,10 +2,10 @@
 
 Package: bioperl-run-pm%type_pkg[perl]
 Version: 1.6.1
-Revision: 1
+Revision: 2
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
 Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5
-Depends: bioperl-pm%type_pkg[perl] (= 1.6), algorithm-diff-pm, ipc-run-pm, 
io-string-pm, xml-twig-pm%type_pkg[perl]
+Depends: bioperl-pm%type_pkg[perl] (= 1.6), algorithm-diff-pm, 
ipc-run-pm%type_pkg[perl], io-string-pm, xml-twig-pm%type_pkg[perl]
 BuildDepends: perl%type_pkg[perl]-core, fink (= 0.24.12), 
module-build-pm%type_pkg[perl] (= 0.2808)
 
 Source: http://www.bioperl.org/DIST/BioPerl-run-%v.tar.bz2


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[cvs] dists/10.4/unstable/main/finkinfo/sci massxpert.info,1.10,1.11

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv24341

Modified Files:
massxpert.info 
Log Message:
new upstream

Index: massxpert.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/massxpert.info,v
retrieving revision 1.10
retrieving revision 1.11
diff -u -d -r1.10 -r1.11
--- massxpert.info  9 May 2010 23:43:38 -   1.10
+++ massxpert.info  11 May 2010 23:04:03 -  1.11
@@ -1,11 +1,11 @@
 Info2: 
 Package: massxpert-%type_pkg[qt]
-Version: 2.3.5
+Version: 2.3.6
 Revision: 1001
 Type: qt (x11 mac)
 
 Source: http://download.tuxfamily.org/massxpert/source/massxpert-%v.tar.gz
-Source-MD5: d7529c6e99e0ea04c2e67118d83ae9ab
+Source-MD5: e51cf36f01e78cf07a71e33a8e0f8ad7
 Source2-MD5: fa0a17b2c4beba4cd37dc56889e2e212
 Source2: http://massxpert.org/userman/pdf/massxpert.pdf
 
@@ -23,6 +23,7 @@
 BuildDepends: 
  cmake, 
  fink (= 0.29.7-1),
+ fink-package-precedence,
  freetype219, 
  fontconfig2-dev, 
  glib2-dev, 
@@ -44,7 +45,7 @@
 Description: Mass spectrometric package, uses Qt4
 
 GCC: 4.0
-SetLDFLAGS: -Wl,-framework,CoreFoundation
+#SetLDFLAGS: -Wl,-framework,CoreFoundation
 
 CompileScript: 
  #!/bin/sh -ev
@@ -66,11 +67,6 @@
  make
 
 
-# make install DESTDIR=%d doesn't work, so just use the default InstallScript
-#InstallScript: 
-# make install
-#
-
 AppBundles: gui/massXpert.app
 DocFiles: COPYING TODO ../massxpert.pdf
 


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[cvs] dists/10.4/unstable/main/finkinfo/sci massxpert.info,1.11,1.12

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv29988

Modified Files:
massxpert.info 
Log Message:
remove f-p-p from bdepends

Index: massxpert.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/massxpert.info,v
retrieving revision 1.11
retrieving revision 1.12
diff -u -d -r1.11 -r1.12
--- massxpert.info  11 May 2010 23:04:03 -  1.11
+++ massxpert.info  12 May 2010 02:23:09 -  1.12
@@ -23,7 +23,6 @@
 BuildDepends: 
  cmake, 
  fink (= 0.29.7-1),
- fink-package-precedence,
  freetype219, 
  fontconfig2-dev, 
  glib2-dev, 


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[cvs] dists/10.4/unstable/main/finkinfo/sci massxpert.info, 1.9, 1.10 massxpert.patch, 1.3, 1.4

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv15901

Modified Files:
massxpert.info massxpert.patch 
Log Message:
new upstream, qt4-x11 and qt4-mac variants, taking over maintainership

Index: massxpert.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/massxpert.info,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -d -r1.9 -r1.10
--- massxpert.info  18 Aug 2008 01:55:23 -  1.9
+++ massxpert.info  9 May 2010 23:43:38 -   1.10
@@ -1,28 +1,79 @@
-Package: massxpert
-Version: 1.6.7
-Revision: 1004
-Source: http://www.massxpert.org/downloads/source/%n-%v.tar.gz
-Depends: freetype219-shlibs, fontconfig2-shlibs, glib2-shlibs, 
libgettext3-shlibs, qt4-x11-core-shlibs (= 4.3-1), qt4-x11-gui-shlibs (= 
4.3-1), x11, x11-shlibs, libpng3-shlibs, libiconv
-BuildDepends: cmake, libpng3, freetype219, fontconfig2-dev, glib2-dev, 
libgettext3-dev, qt4-x11 (= 4.3-1), x11-dev, libiconv-dev, fink (= 0.28.1-1)
-GCC: 4.0
-Maintainer: Jack Fink jackf...@users.sourceforge.net
+Info2: 
+Package: massxpert-%type_pkg[qt]
+Version: 2.3.5
+Revision: 1001
+Type: qt (x11 mac)
+
+Source: http://download.tuxfamily.org/massxpert/source/massxpert-%v.tar.gz
+Source-MD5: d7529c6e99e0ea04c2e67118d83ae9ab
+Source2-MD5: fa0a17b2c4beba4cd37dc56889e2e212
+Source2: http://massxpert.org/userman/pdf/massxpert.pdf
+
+Depends: 
+ fontconfig2-shlibs, 
+ freetype219-shlibs, 
+ glib2-shlibs, 
+ libgettext8-shlibs, 
+ libiconv,
+ libpng3-shlibs, 
+ qt4-%type_pkg[qt]-core-shlibs (= 4.6.1-1), 
+ qt4-%type_pkg[qt]-gui-shlibs (= 4.6.1-1), 
+ (%type_pkg[qt] = x11) x11-shlibs 
+
+BuildDepends: 
+ cmake, 
+ fink (= 0.29.7-1),
+ freetype219, 
+ fontconfig2-dev, 
+ glib2-dev, 
+ libgettext8-dev, 
+ libiconv-dev, 
+ libpng3, 
+ qt4-%type_pkg[qt] (= 4.6.1-1), 
+ (%type_pkg[qt] = x11) x11-dev
+
+
+PatchFile: massxpert.patch
+PatchFile-MD5: 0627d543ebf79719269280437571e4cf
+
+Maintainer: Koen van der Drift drift...@users.sourceforge.net
 Homepage: http://www.massxpert.org
 License: GPL
 # GPL v3, actually
+
 Description: Mass spectrometric package, uses Qt4
-Source-MD5: bb1939b8826a71823ee48b42de5bf561
-SourceDirectory: %n
+
+GCC: 4.0
+SetLDFLAGS: -Wl,-framework,CoreFoundation
+
 CompileScript: 
-   PATH=%p/lib/qt4-x11/bin:$PATH cmake -DCMAKE_INSTALL_PREFIX=%p .
-make
-
-InstallScript: make install DESTDIR=%d
-Shlibs: 
-   !%p/lib/massxpert/plugins/libmassListSorterPlugin.dylib
-   !%p/lib/massxpert/plugins/libnumeralsLocaleConverterPlugin.dylib
-   !%p/lib/massxpert/plugins/libseqToolsPlugin.dylib
+ #!/bin/sh -ev
+ export PATH=%p/lib/qt4-%type_pkg[qt]/bin:$PATH  
+ %p/bin/cmake \
+ --debug-output -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON \
+ -DCMAKE_INSTALL_PREFIX:PATH=%p \
+ -DCMAKE_INCLUDE_PATH:PATH=%p/include \
+ -DCMAKE_LIBRARY_PATH:PATH=%p/lib \
+ -DCMAKE_OSX_DEPLOYMENT_TARGET:STRING= \
+ -DCMAKE_OSX_SYSROOT:PATH=/ \
+ .
+
+# patch three link.txt files after cmake to create a bundle instead of dynamic 
libraries
+ perl -pi -e s,dynamiclib,bundle,g 
plugins-src/massListSorterPlugin/CMakeFiles/massListSorterPlugin.dir/link.txt
+ perl -pi -e s,dynamiclib,bundle,g 
plugins-src/numeralsLocaleConverterPlugin/CMakeFiles/numeralsLocaleConverterPlugin.dir/link.txt
+ perl -pi -e s,dynamiclib,bundle,g 
plugins-src/seqToolsPlugin/CMakeFiles/seqToolsPlugin.dir/link.txt
+
+ make
 
-DocFiles: COPYING TODO install_manifest.txt
+
+# make install DESTDIR=%d doesn't work, so just use the default InstallScript
+#InstallScript: 
+# make install
+#
+
+AppBundles: gui/massXpert.app
+DocFiles: COPYING TODO ../massxpert.pdf
+
 DescDetail: 
 The massXpert project aims at providing (bio)chemists with 
 a software package allowing the following:
@@ -35,3 +86,6 @@
 * Mass-to-charge ratio calculations with inline change of ionization agent;
 * Simulation of isotopic patterns for any chemical formula.
 
+
+DescPackaging: Previous maintainer: Jack Fink jackf...@users.sourceforge.net
+
\ No newline at end of file

Index: massxpert.patch
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/massxpert.patch,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- massxpert.patch 20 Oct 2007 08:39:29 -  1.3
+++ massxpert.patch 9 May 2010 23:43:38 -   1.4
@@ -1,46 +1,28 @@
-diff -urd massxpert.orig/config.h massxpert/config.h
 massxpert.orig/config.h2007-07-10 22:30:55.0 +0200
-+++ massxpert/config.h 2007-07-12 07:07:11.0 +0200
-@@ -1,11 +1,11 @@
- #define TARGET massxpert
- #define VERSION 1.6.6
--#define PREFIX /usr/local
--#define BASEBINDIR /usr/local/bin
--#define PLUGINDIR /usr/local/lib/massxpert/plugins
--#define DATADIR /usr/local/share/massxpert
--#define DOCDIR /usr/local/share/doc/massxpert
--#define USERMANDIR /usr/local/share

[cvs] dists/10.4/unstable/main/finkinfo/libs/pythonmods poppler-py.info, 1.1, 1.2

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/pythonmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv27928

Modified Files:
poppler-py.info 
Log Message:
added deps and bdeps, thanks dmacks

Index: poppler-py.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/pythonmods/poppler-py.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- poppler-py.info 3 May 2010 22:24:30 -   1.1
+++ poppler-py.info 5 May 2010 01:50:12 -   1.2
@@ -1,7 +1,7 @@
 Info2: 
 Package: poppler-py%type_pkg[python]
 Version: 0.10.1
-Revision: 1
+Revision: 2
 Type: python (2.6)
 Description: Python bindings for Poppler
 DescDetail: 
@@ -21,8 +21,10 @@
 Depends: 
  python%type_pkg[python],
  atk1-shlibs,
+ cairo-shlibs,
  glib2-shlibs,
  gtk+2-shlibs,
+ libgettext8-shlibs,
  pango1-xft2-ft219-shlibs,
  pycairo-py%type_pkg[python],
  pygobject2-py%type_pkg[python],
@@ -36,14 +38,17 @@
  fink-package-precedence,
  pkgconfig (= 0.23),
  atk1,
+ cairo,
  glib2-dev,
  gtk+2-dev,
+ libgettext8-dev,
  pango1-xft2-ft219-dev,
  pycairo-py%type_pkg[python]-dev,
  pygobject2-py%type_pkg[python]-dev,
  pygtk2-gtk-py%type_pkg[python]-dev,
  poppler4 (= %v),
- poppler4-glib (= %v)
+ poppler4-glib (= %v),
+ x11-dev
 
 
 CompileScript: 


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[cvs] dists/10.4/unstable/main/finkinfo/libs/pythonmods poppler-py.info, 1.2, 1.3

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/pythonmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv4990

Modified Files:
poppler-py.info 
Log Message:
added more build depends

Index: poppler-py.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/pythonmods/poppler-py.info,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -d -r1.2 -r1.3
--- poppler-py.info 5 May 2010 01:50:12 -   1.2
+++ poppler-py.info 5 May 2010 02:20:58 -   1.3
@@ -7,6 +7,10 @@
 DescDetail: 
  Poppler is a PDF rendering library based on the xpdf-3.0 code base.
  This package contains the Python bindings for Poppler.
+ 
+ If you were looking for the fable of the poppy and the python,
+ please check your local library.
+ 
 
 Maintainer: Koen van der Drift drift...@users.sourceforge.netorg
 License: GPL
@@ -39,10 +43,14 @@
  pkgconfig (= 0.23),
  atk1,
  cairo,
+ freetype219,
+ fontconfig2-dev,
  glib2-dev,
+ glitz,
  gtk+2-dev,
  libgettext8-dev,
  pango1-xft2-ft219-dev,
+ pixman,
  pycairo-py%type_pkg[python]-dev,
  pygobject2-py%type_pkg[python]-dev,
  pygtk2-gtk-py%type_pkg[python]-dev,


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[cvs] dists/10.4/unstable/main/finkinfo/libs/pythonmods poppler-py.info, NONE, 1.1 poppler-py.patch, NONE, 1.1

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/pythonmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv17585

Added Files:
poppler-py.info poppler-py.patch 
Log Message:
new package

--- NEW FILE: poppler-py.patch ---
diff -Nurd pypoppler-0.10.1/poppler.override 
pypoppler-0.10.1-patch/poppler.override
--- pypoppler-0.10.1/poppler.override   2009-07-12 18:02:52.0 -0400
+++ pypoppler-0.10.1-patch/poppler.override 2010-05-02 13:44:26.0 
-0400
@@ -19,8 +19,10 @@
 %%
 headers
 #include Python.h
+#define NO_IMPORT_PYGOBJECT
 #include pygobject.h
 #include glib/poppler.h
+#define NO_IMPORT_PYGTK
 #include pygtk/pygtk.h
 #include pycairo.h
 #include gdk/gdkregion.h

--- NEW FILE: poppler-py.info ---
Info2: 
Package: poppler-py%type_pkg[python]
Version: 0.10.1
Revision: 1
Type: python (2.6)
Description: Python bindings for Poppler
DescDetail: 
 Poppler is a PDF rendering library based on the xpdf-3.0 code base.
 This package contains the Python bindings for Poppler.

Maintainer: Koen van der Drift drift...@users.sourceforge.netorg
License: GPL
Homepage: https://launchpad.net/poppler-python

Source: 
http://launchpad.net/poppler-python/trunk/development/+download/pypoppler-%v.tar.gz
Source-MD5: 146ecb7e1049dd9b92478d61c148829e

PatchFile: poppler-py.patch
PatchFile-MD5: 91f003f83a197b07ea3d92f8680283eb

Depends: 
 python%type_pkg[python],
 atk1-shlibs,
 glib2-shlibs,
 gtk+2-shlibs,
 pango1-xft2-ft219-shlibs,
 pycairo-py%type_pkg[python],
 pygobject2-py%type_pkg[python],
 pygtk2-gtk-py%type_pkg[python],
 poppler4-shlibs (= %v),
 poppler4-glib-shlibs (= %v)


BuildDepends: 
 fink (= 0.24.12),
 fink-package-precedence,
 pkgconfig (= 0.23),
 atk1,
 glib2-dev,
 gtk+2-dev,
 pango1-xft2-ft219-dev,
 pycairo-py%type_pkg[python]-dev,
 pygobject2-py%type_pkg[python]-dev,
 pygtk2-gtk-py%type_pkg[python]-dev,
 poppler4 (= %v),
 poppler4-glib (= %v)


CompileScript: 
 PYTHON=%p/bin/python%type_raw[python] ./configure %c
 make
 fink-package-precedence --headers --libs .


InstallScript: 
  make -j1 install DESTDIR=%d


DocFiles: AUTHORS ChangeLog COPYING INSTALL NEWS 



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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods version-pm.info, 1.15, 1.16

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv6925

Modified Files:
version-pm.info 
Log Message:
new upstream

Index: version-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/version-pm.info,v
retrieving revision 1.15
retrieving revision 1.16
diff -u -d -r1.15 -r1.16
--- version-pm.info 28 Jan 2010 12:26:33 -  1.15
+++ version-pm.info 24 Apr 2010 10:58:46 -  1.16
@@ -1,6 +1,6 @@
 Info2: 
 Package: version-pm%type_pkg[perl]
-Version: 0.80
+Version: 0.82
 Revision: 1
 Epoch: 1
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
@@ -19,7 +19,7 @@
 
 # Unpack Phase.
 Source: mirror:cpan:authors/id/J/JP/JPEACOCK/version-%v.tar.gz
-Source-MD5: 0add2a0132d582ad81d62b4e38fd3f92
+Source-MD5: c073f079557297003d805b535711c5d1
 
 # Install Phase.
 InstallScript: 


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods svg-pm.info, 1.10, 1.11

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv7782

Modified Files:
svg-pm.info 
Log Message:
new upstream

Index: svg-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/svg-pm.info,v
retrieving revision 1.10
retrieving revision 1.11
diff -u -d -r1.10 -r1.11
--- svg-pm.info 4 Feb 2009 21:43:42 -   1.10
+++ svg-pm.info 24 Apr 2010 11:04:51 -  1.11
@@ -1,10 +1,10 @@
 Package: svg-pm
-Version: 2.49
+Version: 2.50
 Revision: 1
 Source: mirror:cpan:authors/id/R/RO/RONAN/SVG-%v.tar.gz
 Type: perl
 UpdatePOD: True
-Source-MD5: cd83d8ff1ef6dffdb8f60cff6d9a0278
+Source-MD5: eb98588ae85277cd7769bce6ba3bc8f9
 
 InstallScript: 
  %{default_script}


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[cvs] dists/10.4/unstable/main/finkinfo/sci tcoffee-10.4.info, 1.18, 1.19 tcoffee-10.5.info, 1.19, 1.20 tcoffee-10.6.info, 1.3, 1.4

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv7998

Modified Files:
tcoffee-10.4.info tcoffee-10.5.info tcoffee-10.6.info 
Log Message:
new upstream

Index: tcoffee-10.6.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/tcoffee-10.6.info,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- tcoffee-10.6.info   4 Apr 2010 18:08:43 -   1.3
+++ tcoffee-10.6.info   24 Apr 2010 11:07:13 -  1.4
@@ -1,9 +1,9 @@
 Package: tcoffee
-Version: 8.47
+Version: 8.69
 Revision: 1001
 Distribution: 10.6
 Source: http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_%v.tar.gz
-Source-MD5: b34a004539d703c53b601ab2c71f095b
+Source-MD5: b00629c5f08e329d9d7524b6380567c5
 Sourcedirectory: T-COFFEE_distribution_Version_%v
 Depends: soap-lite-pm588
 BuildDepends: fink (= 0.24.12) 

Index: tcoffee-10.4.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/tcoffee-10.4.info,v
retrieving revision 1.18
retrieving revision 1.19
diff -u -d -r1.18 -r1.19
--- tcoffee-10.4.info   4 Apr 2010 18:08:43 -   1.18
+++ tcoffee-10.4.info   24 Apr 2010 11:07:13 -  1.19
@@ -1,9 +1,9 @@
 Package: tcoffee
-Version: 8.47
+Version: 8.69
 Revision: 1
 Distribution: 10.4
 Source: http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_%v.tar.gz
-Source-MD5: b34a004539d703c53b601ab2c71f095b
+Source-MD5: b00629c5f08e329d9d7524b6380567c5
 Sourcedirectory: T-COFFEE_distribution_Version_%v
 Depends: soap-lite-pm588
 BuildDepends: fink (= 0.24.12) 

Index: tcoffee-10.5.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/tcoffee-10.5.info,v
retrieving revision 1.19
retrieving revision 1.20
diff -u -d -r1.19 -r1.20
--- tcoffee-10.5.info   4 Apr 2010 18:08:43 -   1.19
+++ tcoffee-10.5.info   24 Apr 2010 11:07:13 -  1.20
@@ -1,9 +1,9 @@
 Package: tcoffee
-Version: 8.47
+Version: 8.69
 Revision: 101
 Distribution: 10.5
 Source: http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_%v.tar.gz
-Source-MD5: b34a004539d703c53b601ab2c71f095b
+Source-MD5: b00629c5f08e329d9d7524b6380567c5
 Sourcedirectory: T-COFFEE_distribution_Version_%v
 Depends: soap-lite-pm588
 BuildDepends: fink (= 0.24.12) 


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[cvs] dists/10.4/unstable/main/finkinfo/sci tcoffee-10.4.info, 1.19, 1.20 tcoffee-10.5.info, 1.20, 1.21 tcoffee-10.6.info, 1.4, 1.5 tcoffee.patch, 1.13, 1.14

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv20740

Modified Files:
tcoffee-10.4.info tcoffee-10.5.info tcoffee-10.6.info 
tcoffee.patch 
Log Message:
fix patch file

Index: tcoffee-10.6.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/tcoffee-10.6.info,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -d -r1.4 -r1.5
--- tcoffee-10.6.info   24 Apr 2010 11:07:13 -  1.4
+++ tcoffee-10.6.info   24 Apr 2010 17:33:38 -  1.5
@@ -8,7 +8,7 @@
 Depends: soap-lite-pm588
 BuildDepends: fink (= 0.24.12) 
 PatchFile: %n.patch
-PatchFile-MD5: ee77b00e7680b4b9def05c0e1aa80591
+PatchFile-MD5: d6f44c77758306d8faf1d0db7c55363d
 
 CompileScript: 
  ./install tcoffee -path=%p

Index: tcoffee-10.4.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/tcoffee-10.4.info,v
retrieving revision 1.19
retrieving revision 1.20
diff -u -d -r1.19 -r1.20
--- tcoffee-10.4.info   24 Apr 2010 11:07:13 -  1.19
+++ tcoffee-10.4.info   24 Apr 2010 17:33:38 -  1.20
@@ -8,7 +8,7 @@
 Depends: soap-lite-pm588
 BuildDepends: fink (= 0.24.12) 
 PatchFile: %n.patch
-PatchFile-MD5: ee77b00e7680b4b9def05c0e1aa80591
+PatchFile-MD5: d6f44c77758306d8faf1d0db7c55363d
 
 CompileScript: 
  ./install tcoffee -path=%p

Index: tcoffee-10.5.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/tcoffee-10.5.info,v
retrieving revision 1.20
retrieving revision 1.21
diff -u -d -r1.20 -r1.21
--- tcoffee-10.5.info   24 Apr 2010 11:07:13 -  1.20
+++ tcoffee-10.5.info   24 Apr 2010 17:33:38 -  1.21
@@ -8,7 +8,7 @@
 Depends: soap-lite-pm588
 BuildDepends: fink (= 0.24.12) 
 PatchFile: %n.patch
-PatchFile-MD5: ee77b00e7680b4b9def05c0e1aa80591
+PatchFile-MD5: d6f44c77758306d8faf1d0db7c55363d
 
 CompileScript: 
  ./install tcoffee -path=%p

Index: tcoffee.patch
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/tcoffee.patch,v
retrieving revision 1.13
retrieving revision 1.14
diff -u -d -r1.13 -r1.14
--- tcoffee.patch   6 Feb 2010 22:30:22 -   1.13
+++ tcoffee.patch   24 Apr 2010 17:33:38 -  1.14
@@ -1,11 +1,12 @@
-diff -Nurd T-COFFEE_distribution_Version_8.14/install 
T-COFFEE_distribution_Version_8.14-patched/install
 T-COFFEE_distribution_Version_8.14/install 2009-10-27 05:12:05.0 
-0400
-+++ T-COFFEE_distribution_Version_8.14-patched/install 2010-02-06 
15:03:47.0 -0500
-@@ -545,6 +545,7 @@
+diff -Nurd T-COFFEE_distribution/install T-COFFEE_distribution-patched/install
+--- T-COFFEE_distribution/install  2010-04-23 15:04:43.0 -0400
 T-COFFEE_distribution-patched/install  2010-04-24 13:29:53.0 
-0400
+@@ -574,6 +574,8 @@
  
  sub sign_license_ni
{
-+  return;
++return;
++
  my $F=new FileHandle;
  open ($F, license.txt);
  while ($F)


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[cvs] dists/10.4/unstable/main/finkinfo/sci emboss.info, 1.37, 1.38 emboss.patch, 1.18, 1.19

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv24884

Modified Files:
emboss.info emboss.patch 
Log Message:
upstream patch

Index: emboss.patch
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/emboss.patch,v
retrieving revision 1.18
retrieving revision 1.19
diff -u -d -r1.18 -r1.19
--- emboss.patch8 Mar 2010 16:40:52 -   1.18
+++ emboss.patch15 Apr 2010 02:14:21 -  1.19
@@ -6479,3 +6479,35 @@
  am__objects_1 = pdfutils.lo plargs.lo plbox.lo plcont.lo plcore.lo \
plctrl.lo plcvt.lo pldtik.lo plfill.lo plhist.lo plline.lo \
plmap.lo plot3d.lo plpage.lo plsdef.lo plshade.lo plsym.lo \
+
+--- EMBOSS-6.2.0/emboss/tfm.c  2008-07-15 10:44:56.0 -0400
 EMBOSS-6.2.0-pathced/emboss/tfm.c  2010-04-14 06:23:15.0 -0400
+@@ -165,7 +165,7 @@
+ /* try to open the installed doc directory */
+ if(ajStrGetLen(roottmp))
+   ajStrAssignS(docroot, roottmp);
+-else
++   else
+ {
+ ajStrAssignS(docrootinst, ajNamValueInstalldir());
+   ajDirnameFix(docrootinst);
+@@ -198,9 +198,8 @@
+ ajFmtPrintS(docroot,%Sprograms%shtml%s,
+ docrootinst,SLASH_STRING,SLASH_STRING);
+ else
+-ajFmtPrintS(docroot,%Shtml%semboss%sapps%s,
+-docrootinst,SLASH_STRING,SLASH_STRING,
+-SLASH_STRING);
++ajFmtPrintS(docroot,%Sprograms%shtml%s,
++docrootinst,SLASH_STRING,SLASH_STRING);
+   }
+   }
+   else
+@@ -349,4 +348,4 @@
+ ajStrDel(pre);
+ 
+ return;
+-}
++}
+
+

Index: emboss.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/emboss.info,v
retrieving revision 1.37
retrieving revision 1.38
diff -u -d -r1.37 -r1.38
--- emboss.info 10 Apr 2010 16:45:55 -  1.37
+++ emboss.info 15 Apr 2010 02:14:21 -  1.38
@@ -1,6 +1,6 @@
 Package: emboss
 Version: 6.2.0
-Revision: 3
+Revision: 4
 #Distribution: 10.4, 10.5
 Depends: 
  %N-ajax6-shlibs (= %v-%r), 
@@ -46,7 +46,7 @@
 #SetCPPFLAGS: -Dstat64=stat
 
 PatchFile: %n.patch
-PatchFile-MD5: 0fcc3349a801bec9a141e5603211e06a
+PatchFile-MD5: 574519343f1dc9078fbe14cef21a6bce
 
 ConfigureParams: 
  --with-java=/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home \


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[cvs] dists/10.4/unstable/main/finkinfo/sci kemboss-qt4.info,1.3,1.4

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv14709

Modified Files:
kemboss-qt4.info 
Log Message:
new upstream

Index: kemboss-qt4.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/kemboss-qt4.info,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- kemboss-qt4.info9 Feb 2010 00:21:46 -   1.3
+++ kemboss-qt4.info10 Apr 2010 12:35:37 -  1.4
@@ -1,7 +1,7 @@
 Info2: 
 Package: kemboss-qt4-%type_pkg[qt]
-Version: 0.10
-Revision: 2
+Version: 0.11
+Revision: 1
 Type: qt (x11 mac)
 
 Depends: 
@@ -17,11 +17,11 @@
  emboss-plplot3-shlibs (= 6.2.0)
 
 
-Conflicts: kemboss (= 0.9-1)
-Replaces: kemboss (= 0.9-1)
+Conflicts: kemboss (= 0.10-1)
+Replaces: kemboss (= 0.10-1)
 
-Source: 
http://www.tobias-schwarz.net/programmierung/sources/kemboss_0_10_src.tar.gz
-Source-MD5: d3231f4d4814be0e44297808b9dff416
+Source: 
http://www.tobias-schwarz.net/programmierung/sources/kemboss_0_11_src.tar.gz
+Source-MD5: d9ac8eb71f86d9ae1f66792c747baaf6
 SourceDirectory: kemboss-%v
 
 PatchScript: perl -pi -e 's,\/usr\/local,%p,g' src/src.pro


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[cvs] dists/10.4/unstable/main/finkinfo/sci embossdb-rebase.info, 1.2, 1.3

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv10703

Modified Files:
embossdb-rebase.info 
Log Message:
new upstream

Index: embossdb-rebase.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/embossdb-rebase.info,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -d -r1.2 -r1.3
--- embossdb-rebase.info22 Nov 2006 17:16:39 -  1.2
+++ embossdb-rebase.info10 Apr 2010 16:43:04 -  1.3
@@ -1,17 +1,17 @@
 Package: embossdb-rebase
-Version: 509
+Version: 004
 Revision: 1
-
+Epoch: 1
 Depends: emboss (= 2.8.0-3)
 
 Source: ftp://ftp.ebi.ac.uk/pub/databases/rebase/NEWS.%v.Z
-Source-MD5: aa75c58e415a916470ab7f182cb59699
+Source-MD5: 15192c5749665ef4d52750bb15bd92bc
 Source2: ftp://ftp.ebi.ac.uk/pub/databases/rebase/proto.%v.Z
-Source2-MD5: 00359821991029bb7f9030d1474960f3
+Source2-MD5: 3852caefc01100f9f7823c4b163f70d4
 Source3: ftp://ftp.ebi.ac.uk/pub/databases/rebase/REBASE.DOC.Z
-Source3-MD5: 7043fb53194406cb3dd0a05bd9d6d432
+Source3-MD5: dbe19aea0bda17bdf2e45c8dddb51d60
 Source4: ftp://ftp.ebi.ac.uk/pub/databases/rebase/withrefm.%v.Z
-Source4-MD5: 044f943501e579678913ccad909e9556
+Source4-MD5: b2e4ac5515ea57a8612f52719dcb24b8
 #Source5: ftp://ftp.ebi.ac.uk/pub/databases/rebase/VERSION.Z
 #Source5-MD5: 6270fbb1a72f47d3d71b0a290ad56031
 
@@ -46,6 +46,10 @@
 refreshed on a nightly basis.
 
 
+DescPort: 
+ Set Epoch to 1, because version number went from 999 to 000,
+ instead of 1000.
+
 Maintainer: Koen van der Drift drift...@users.sourceforge.net
 HomePage: http://rebase.neb.com/
 License: Public Domain


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[cvs] dists/10.4/unstable/main/finkinfo/sci emboss.info,1.36,1.37

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv11559

Modified Files:
emboss.info 
Log Message:
use --docdir so programs will look in the correct location for docfiles

Index: emboss.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/emboss.info,v
retrieving revision 1.36
retrieving revision 1.37
diff -u -d -r1.36 -r1.37
--- emboss.info 8 Mar 2010 16:40:52 -   1.36
+++ emboss.info 10 Apr 2010 16:45:55 -  1.37
@@ -1,6 +1,6 @@
 Package: emboss
 Version: 6.2.0
-Revision: 2
+Revision: 3
 #Distribution: 10.4, 10.5
 Depends: 
  %N-ajax6-shlibs (= %v-%r), 
@@ -52,7 +52,8 @@
  --with-java=/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home \
  
--with-javaos=/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include
 \
  --disable-dependency-tracking \
- --libdir=%p/lib/EMBOSS
+ --libdir=%p/lib/EMBOSS \
+ --docdir=%p/share/EMBOSS 
 
 
 CompileScript: 


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[cvs] dists/10.4/unstable/main/finkinfo/sci tcoffee-10.4.info, 1.17, 1.18 tcoffee-10.5.info, 1.18, 1.19 tcoffee-10.6.info, 1.2, 1.3

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv15510

Modified Files:
tcoffee-10.4.info tcoffee-10.5.info tcoffee-10.6.info 
Log Message:
new upstream

Index: tcoffee-10.6.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/tcoffee-10.6.info,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -d -r1.2 -r1.3
--- tcoffee-10.6.info   6 Feb 2010 22:30:22 -   1.2
+++ tcoffee-10.6.info   4 Apr 2010 18:08:43 -   1.3
@@ -1,9 +1,9 @@
 Package: tcoffee
-Version: 8.14
+Version: 8.47
 Revision: 1001
 Distribution: 10.6
 Source: http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_%v.tar.gz
-Source-MD5: ab2c4ba0941a5f4074a695f3b806fc4b
+Source-MD5: b34a004539d703c53b601ab2c71f095b
 Sourcedirectory: T-COFFEE_distribution_Version_%v
 Depends: soap-lite-pm588
 BuildDepends: fink (= 0.24.12) 

Index: tcoffee-10.4.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/tcoffee-10.4.info,v
retrieving revision 1.17
retrieving revision 1.18
diff -u -d -r1.17 -r1.18
--- tcoffee-10.4.info   6 Feb 2010 22:30:22 -   1.17
+++ tcoffee-10.4.info   4 Apr 2010 18:08:43 -   1.18
@@ -1,9 +1,9 @@
 Package: tcoffee
-Version: 8.14
+Version: 8.47
 Revision: 1
 Distribution: 10.4
 Source: http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_%v.tar.gz
-Source-MD5: ab2c4ba0941a5f4074a695f3b806fc4b
+Source-MD5: b34a004539d703c53b601ab2c71f095b
 Sourcedirectory: T-COFFEE_distribution_Version_%v
 Depends: soap-lite-pm588
 BuildDepends: fink (= 0.24.12) 

Index: tcoffee-10.5.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/tcoffee-10.5.info,v
retrieving revision 1.18
retrieving revision 1.19
diff -u -d -r1.18 -r1.19
--- tcoffee-10.5.info   6 Feb 2010 22:30:22 -   1.18
+++ tcoffee-10.5.info   4 Apr 2010 18:08:43 -   1.19
@@ -1,9 +1,9 @@
 Package: tcoffee
-Version: 8.14
+Version: 8.47
 Revision: 101
 Distribution: 10.5
 Source: http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_%v.tar.gz
-Source-MD5: ab2c4ba0941a5f4074a695f3b806fc4b
+Source-MD5: b34a004539d703c53b601ab2c71f095b
 Sourcedirectory: T-COFFEE_distribution_Version_%v
 Depends: soap-lite-pm588
 BuildDepends: fink (= 0.24.12) 


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods graph-pm.info, 1.18, 1.19

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv16025

Modified Files:
graph-pm.info 
Log Message:
new upstream

Index: graph-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/graph-pm.info,v
retrieving revision 1.18
retrieving revision 1.19
diff -u -d -r1.18 -r1.19
--- graph-pm.info   18 Jan 2009 17:15:58 -  1.18
+++ graph-pm.info   3 Apr 2010 22:03:52 -   1.19
@@ -1,12 +1,12 @@
 Package: graph-pm
-Version: 0.91
+Version: 0.94
 Revision: 1
 Epoch: 1
-Depends: heap-pm
+Depends: heap-pm, test-pod-coverage-pm,test-pod-pm
 Source: mirror:cpan:authors/id/J/JH/JHI/Graph-%v.tar.gz
 Type: perl
 UpdatePOD: True
-Source-MD5: 81cf32f8fb524bfc9f4cd7a86486e85a
+Source-MD5: 21c7c5b108fdf898ca1679a0509ccbb2
 
 DocFiles: Changes README DESIGN MANIFEST RELEASE TODO
 Description: Graph module for perl


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods module-build-pm-10.4.info, 1.13, 1.14 module-build-pm-10.5.info, 1.15, 1.16 module-build-pm-10.6.info, 1.10, 1.11 module-build-pm.info, 1.23, 1.24

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv16310

Modified Files:
module-build-pm-10.4.info module-build-pm-10.5.info 
module-build-pm-10.6.info module-build-pm.info 
Log Message:
new upstream

Index: module-build-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/module-build-pm.info,v
retrieving revision 1.23
retrieving revision 1.24
diff -u -d -r1.23 -r1.24
--- module-build-pm.info21 Feb 2010 16:15:33 -  1.23
+++ module-build-pm.info3 Apr 2010 22:06:14 -   1.24
@@ -1,6 +1,6 @@
 Info2: 
 Package: module-build-pm%type_pkg[perl]
-Version: 0.36.03
+Version: 0.36.07
 Revision: 1
 Epoch: 1
 Architecture: (%type_pkg[perl] = 581) powerpc
@@ -32,8 +32,8 @@
 Replaces: %N-man, %N-bin
 
 # Unpack Phase.
-Source: mirror:cpan:authors/id/D/DA/DAGOLDEN/Module-Build-0.3603.tar.gz
-Source-MD5: 3c45872f65ca7f466ac1990be2312ce8
+Source: mirror:cpan:authors/id/D/DA/DAGOLDEN/Module-Build-0.3607.tar.gz
+Source-MD5: 9dbbbed68e80e28a9e9f3ab5512a6dab
 
 # Compile Phase.
 CompileScript: 

Index: module-build-pm-10.4.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/module-build-pm-10.4.info,v
retrieving revision 1.13
retrieving revision 1.14
diff -u -d -r1.13 -r1.14
--- module-build-pm-10.4.info   21 Feb 2010 16:15:33 -  1.13
+++ module-build-pm-10.4.info   3 Apr 2010 22:06:14 -   1.14
@@ -1,5 +1,5 @@
 Package: module-build-pm
-Version: 0.36.03
+Version: 0.36.07
 Revision: 101
 Epoch: 1
 Distribution: 10.4

Index: module-build-pm-10.6.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/module-build-pm-10.6.info,v
retrieving revision 1.10
retrieving revision 1.11
diff -u -d -r1.10 -r1.11
--- module-build-pm-10.6.info   21 Feb 2010 16:15:33 -  1.10
+++ module-build-pm-10.6.info   3 Apr 2010 22:06:14 -   1.11
@@ -1,5 +1,5 @@
 Package: module-build-pm
-Version: 0.36.03
+Version: 0.36.07
 Revision: 301
 Epoch: 1
 Distribution: 10.6

Index: module-build-pm-10.5.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/module-build-pm-10.5.info,v
retrieving revision 1.15
retrieving revision 1.16
diff -u -d -r1.15 -r1.16
--- module-build-pm-10.5.info   21 Feb 2010 16:15:33 -  1.15
+++ module-build-pm-10.5.info   3 Apr 2010 22:06:14 -   1.16
@@ -1,5 +1,5 @@
 Package: module-build-pm
-Version: 0.36.03
+Version: 0.36.07
 Revision: 201
 Epoch: 1
 Distribution: 10.5


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods data-section-pm.info, 1.2, 1.3

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv725

Modified Files:
data-section-pm.info 
Log Message:
new upstream

Index: data-section-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/data-section-pm.info,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -d -r1.2 -r1.3
--- data-section-pm.info30 Jan 2010 14:18:37 -  1.2
+++ data-section-pm.info28 Mar 2010 15:54:00 -  1.3
@@ -1,6 +1,6 @@
 Info2: 
 Package: data-section-pm%type_pkg[perl]
-Version: 0.100270
+Version: 0.100770
 Revision: 1
 Description: Read data out of your DATA section
 Architecture: (%type_pkg[perl] = 581) powerpc
@@ -20,7 +20,7 @@
 
 
 Source: mirror:cpan:authors/id/R/RJ/RJBS/Data-Section-%v.tar.gz
-Source-MD5: b349fd7e5f47212faefe5bf31347d43e
+Source-MD5: aca27f967b1ee5cd82b5f5ce3d80c396
 
 InstallScript: 
  %{default_script}


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods extutils-parsexs-pm.info, 1.5, 1.6

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv1125

Modified Files:
extutils-parsexs-pm.info 
Log Message:
new upstream

Index: extutils-parsexs-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/extutils-parsexs-pm.info,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -d -r1.5 -r1.6
--- extutils-parsexs-pm.info13 Feb 2010 15:00:36 -  1.5
+++ extutils-parsexs-pm.info28 Mar 2010 15:56:22 -  1.6
@@ -1,5 +1,5 @@
 Package: extutils-parsexs-pm
-Version: 2.2203
+Version: 2.2205
 Revision: 1
 Description: Converts Perl XS code into C code
 Type: perl
@@ -11,7 +11,7 @@
 
 # Unpack Phase:
 Source: mirror:cpan:authors/id/D/DA/DAGOLDEN/ExtUtils-ParseXS-%v.tar.gz
-Source-MD5: a821b311f479a6a2687fa8bb2c4a8689
+Source-MD5: 6be376d2015c7ceb4c5c2421a5c4ff84
 
 # Install Phase:
 UpdatePOD: true


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods soap-lite-pm.info, 1.17, 1.18

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv10299

Modified Files:
soap-lite-pm.info 
Log Message:
new upstream

Index: soap-lite-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/soap-lite-pm.info,v
retrieving revision 1.17
retrieving revision 1.18
diff -u -d -r1.17 -r1.18
--- soap-lite-pm.info   11 Feb 2010 02:58:17 -  1.17
+++ soap-lite-pm.info   28 Mar 2010 16:56:58 -  1.18
@@ -1,8 +1,8 @@
 Info2: 
 
 Package: soap-lite-pm%type_pkg[perl]
-version: 0.710.10
-Revision: 2
+version: 0.711
+Revision: 1
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
 Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5
 ###
@@ -44,7 +44,7 @@
 
 ###
 Source: mirror:cpan:authors/id/M/MK/MKUTTER/SOAP-Lite-%v.tar.gz
-Source-MD5: 45d6679daac03fe4eb604a5b5f416fd5
+Source-MD5: 8b833aedcb8256320438a7b163c3e2a9
 ###
 PatchScript: 
   ### Fix user interaction


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods software-license-pm.info, 1.1, 1.2

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv10719

Modified Files:
software-license-pm.info 
Log Message:
new upstream

Index: software-license-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/software-license-pm.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- software-license-pm.info23 Dec 2009 17:02:28 -  1.1
+++ software-license-pm.info28 Mar 2010 17:00:36 -  1.2
@@ -1,6 +1,6 @@
 Info2: 
 Package: software-license-pm%type_pkg[perl]
-Version: 0.012
+Version: 0.015
 Revision: 1
 Description: Common open source software licenses
 Architecture: (%type_pkg[perl] = 581) powerpc
@@ -24,7 +24,7 @@
 
 # Unpack Phase:
 Source: mirror:cpan:authors/id/R/RJ/RJBS/Software-License-%v.tar.gz
-Source-MD5: 8232072eec55b331b0a56adc253dfa12
+Source-MD5: 56e1711262f89a971a2fa26d865a20fc
 
 # Install Phase:
 InstallScript: 


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[cvs] dists/10.4/unstable/main/finkinfo/sci eigen2.info,1.16,1.17

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv14827

Modified Files:
eigen2.info 
Log Message:
new upstream

Index: eigen2.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/eigen2.info,v
retrieving revision 1.16
retrieving revision 1.17
diff -u -d -r1.16 -r1.17
--- eigen2.info 17 Jan 2010 17:20:40 -  1.16
+++ eigen2.info 14 Mar 2010 19:38:59 -  1.17
@@ -1,5 +1,5 @@
 Package: eigen2
-Version: 2.0.11
+Version: 2.0.12
 Revision: 1
 Maintainer: Koen van der Drift drift...@users.sourceforge.net
 BuildDepends: cmake (= 2.6.2)
@@ -7,7 +7,7 @@
 
 SourceDirectory: eigen
 Source: http://bitbucket.org/eigen/eigen/get/%v.bz2
-Source-MD5: 60fc0cc5135f6e7a8c87e356119eed06
+Source-MD5: d0195ac20bcd91602db8ca967a21e9ec
 SourceRename: %n-%v.tar.bz2
 CompileScript: 
  #!/bin/sh -ev


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[cvs] dists/10.4/unstable/main/finkinfo/sci emboss.info, 1.35, 1.36 emboss.patch, 1.17, 1.18

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv15261

Modified Files:
emboss.info emboss.patch 
Log Message:
upstream patches

Index: emboss.patch
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/emboss.patch,v
retrieving revision 1.17
retrieving revision 1.18
diff -u -d -r1.17 -r1.18
--- emboss.patch25 Jan 2010 13:33:20 -  1.17
+++ emboss.patch8 Mar 2010 16:40:52 -   1.18
@@ -1,7 +1,6 @@
-Binary files EMBOSS-6.2.0/ajax/.DS_Store and 
EMBOSS-6.2.0-patched/ajax/.DS_Store differ
 diff -Nurd EMBOSS-6.2.0/ajax/acd/Makefile.in 
EMBOSS-6.2.0-patched/ajax/acd/Makefile.in
 --- EMBOSS-6.2.0/ajax/acd/Makefile.in  2010-01-15 05:54:39.0 -0500
-+++ EMBOSS-6.2.0-patched/ajax/acd/Makefile.in  2010-01-24 08:32:58.0 
-0500
 EMBOSS-6.2.0-patched/ajax/acd/Makefile.in  2010-03-08 08:52:52.0 
-0500
 @@ -72,7 +72,7 @@
sed '$$!N;$$!N;$$!N;$$!N;s/\n/ /g'
  am__installdirs = $(DESTDIR)$(libdir) $(DESTDIR)$(includedir)
@@ -13,7 +12,7 @@
  libacd_la_OBJECTS = $(am_libacd_la_OBJECTS)
 diff -Nurd EMBOSS-6.2.0/ajax/ajaxdb/Makefile.in 
EMBOSS-6.2.0-patched/ajax/ajaxdb/Makefile.in
[...6437 lines suppressed...]
+   continue;
+ 
+@@ -4737,6 +4782,10 @@
+ 
+   break;
+ case 6:
++if(thys-m  mismatch = thys-m)
++ajFatal(embPatCompileII: Mismatches (%d) must be less than the 
++real pattern length (%d),mismatch,thys-m);
++
+   if (!thys-skipm)
+   {
+   AJCNEW(thys-skipm,thys-m);
 diff -Nurd EMBOSS-6.2.0/plplot/Makefile.in 
EMBOSS-6.2.0-patched/plplot/Makefile.in
 --- EMBOSS-6.2.0/plplot/Makefile.in2010-01-15 05:54:43.0 -0500
-+++ EMBOSS-6.2.0-patched/plplot/Makefile.in2010-01-23 17:44:52.0 
-0500
 EMBOSS-6.2.0-patched/plplot/Makefile.in2010-03-08 08:55:10.0 
-0500
 @@ -71,7 +71,7 @@
sed '$$!N;$$!N;$$!N;$$!N;s/\n/ /g'
  am__installdirs = $(DESTDIR)$(libdir) $(DESTDIR)$(pkgincludedir)

Index: emboss.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/emboss.info,v
retrieving revision 1.35
retrieving revision 1.36
diff -u -d -r1.35 -r1.36
--- emboss.info 25 Jan 2010 19:21:37 -  1.35
+++ emboss.info 8 Mar 2010 16:40:52 -   1.36
@@ -1,6 +1,6 @@
 Package: emboss
 Version: 6.2.0
-Revision: 1
+Revision: 2
 #Distribution: 10.4, 10.5
 Depends: 
  %N-ajax6-shlibs (= %v-%r), 
@@ -34,10 +34,19 @@
 
 Source-MD5: 2e2937dd0493814ca0f64981f4c79319
 
+Source2: ftp://emboss.open-bio.org/pub/EMBOSS/fixes/jemboss.jar
+Source2-MD5: 739d0910e28b20c7defef3283b392c8b
+
+Source3: ftp://emboss.open-bio.org/pub/EMBOSS/fixes/density.2.density.gif
+Source3-MD5: e8a55a1427719238d983c078937db4f6
+
+Source4: ftp://emboss.open-bio.org/pub/EMBOSS/fixes/density.3.density.gif
+Source4-MD5: e47d9c3ad7496289d21665edeb7cecdc
+
 #SetCPPFLAGS: -Dstat64=stat
 
 PatchFile: %n.patch
-PatchFile-MD5: 883f84abeba1ecc40bbc4960fe49241c
+PatchFile-MD5: 0fcc3349a801bec9a141e5603211e06a
 
 ConfigureParams: 
  --with-java=/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home \
@@ -46,6 +55,14 @@
  --libdir=%p/lib/EMBOSS
 
 
+CompileScript: 
+ mv ../jemboss.jar %b/jemboss/lib/
+ mv ../density.2.density.gif %b/doc/programs/html/
+ mv ../density.3.density.gif %b/doc/programs/html/
+ ./configure %c
+ make
+
+
 Installscript: 
   make install DESTDIR=%d
   mkdir -p %i/include/EMBOSS


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[cvs] dists/10.4/unstable/main/finkinfo/libs/pythonmods biopython-py.info, 1.14, 1.15

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/pythonmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv6535

Modified Files:
biopython-py.info 
Log Message:
switching to numpy

Index: biopython-py.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/pythonmods/biopython-py.info,v
retrieving revision 1.14
retrieving revision 1.15
diff -u -d -r1.14 -r1.15
--- biopython-py.info   23 Dec 2009 00:14:29 -  1.14
+++ biopython-py.info   28 Feb 2010 13:31:51 -  1.15
@@ -1,10 +1,17 @@
 Info2: 
 Package: biopython-py%type_pkg[python]
 Version: 1.53
-Revision: 1
+Revision: 2
 Distribution: (%type_pkg[python] = 24) 10.4, (%type_pkg[python] = 24) 10.5
 Type: python (2.4 2.5 2.6)
-Depends: python%type_pkg[python], scipy-core-py%type_pkg[python], 
reportlab-py%type_pkg[python] (= 1.20-1011), clustalw, wise2
+Depends: 
+ python%type_pkg[python], 
+ numpy-py%type_pkg[python] (= 1.3.0-6), 
+ reportlab-py%type_pkg[python] (= 1.20-1011), 
+ clustalw, 
+ wise2
+
+
 BuildDepends: flex
 Replaces: python-biopython-py%type_pkg[python]
 Source: http://biopython.org/DIST/biopython-%v.tar.gz


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods module-build-pm.info, 1.22, 1.23 module-build-pm-10.4.info, 1.12, 1.13 module-build-pm-10.5.info, 1.14, 1.15 module-build-pm-10.6.info, 1.9, 1.10

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv6179

Modified Files:
module-build-pm.info module-build-pm-10.4.info 
module-build-pm-10.5.info module-build-pm-10.6.info 
Log Message:
new upstream

Index: module-build-pm-10.5.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/module-build-pm-10.5.info,v
retrieving revision 1.14
retrieving revision 1.15
diff -u -d -r1.14 -r1.15
--- module-build-pm-10.5.info   19 Jan 2010 03:22:52 -  1.14
+++ module-build-pm-10.5.info   21 Feb 2010 16:15:33 -  1.15
@@ -1,5 +1,5 @@
 Package: module-build-pm
-Version: 0.36
+Version: 0.36.03
 Revision: 201
 Epoch: 1
 Distribution: 10.5

Index: module-build-pm-10.4.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/module-build-pm-10.4.info,v
retrieving revision 1.12
retrieving revision 1.13
diff -u -d -r1.12 -r1.13
--- module-build-pm-10.4.info   19 Jan 2010 03:22:52 -  1.12
+++ module-build-pm-10.4.info   21 Feb 2010 16:15:33 -  1.13
@@ -1,5 +1,5 @@
 Package: module-build-pm
-Version: 0.36
+Version: 0.36.03
 Revision: 101
 Epoch: 1
 Distribution: 10.4

Index: module-build-pm-10.6.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/module-build-pm-10.6.info,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -d -r1.9 -r1.10
--- module-build-pm-10.6.info   19 Jan 2010 03:22:52 -  1.9
+++ module-build-pm-10.6.info   21 Feb 2010 16:15:33 -  1.10
@@ -1,5 +1,5 @@
 Package: module-build-pm
-Version: 0.36
+Version: 0.36.03
 Revision: 301
 Epoch: 1
 Distribution: 10.6

Index: module-build-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/module-build-pm.info,v
retrieving revision 1.22
retrieving revision 1.23
diff -u -d -r1.22 -r1.23
--- module-build-pm.info19 Jan 2010 03:22:52 -  1.22
+++ module-build-pm.info21 Feb 2010 16:15:33 -  1.23
@@ -1,6 +1,6 @@
 Info2: 
 Package: module-build-pm%type_pkg[perl]
-Version: 0.36
+Version: 0.36.03
 Revision: 1
 Epoch: 1
 Architecture: (%type_pkg[perl] = 581) powerpc
@@ -32,8 +32,8 @@
 Replaces: %N-man, %N-bin
 
 # Unpack Phase.
-Source: mirror:cpan:authors/id/D/DA/DAGOLDEN/Module-Build-%v.tar.gz
-Source-MD5: 81506e0dd1a97c224209492fabed9755
+Source: mirror:cpan:authors/id/D/DA/DAGOLDEN/Module-Build-0.3603.tar.gz
+Source-MD5: 3c45872f65ca7f466ac1990be2312ce8
 
 # Compile Phase.
 CompileScript: 


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods extutils-parsexs-pm.info, 1.4, 1.5

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv31665

Modified Files:
extutils-parsexs-pm.info 
Log Message:
new upstream

Index: extutils-parsexs-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/extutils-parsexs-pm.info,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -d -r1.4 -r1.5
--- extutils-parsexs-pm.info3 Feb 2010 00:25:58 -   1.4
+++ extutils-parsexs-pm.info13 Feb 2010 15:00:36 -  1.5
@@ -1,5 +1,5 @@
 Package: extutils-parsexs-pm
-Version: 2.2202
+Version: 2.2203
 Revision: 1
 Description: Converts Perl XS code into C code
 Type: perl
@@ -11,7 +11,7 @@
 
 # Unpack Phase:
 Source: mirror:cpan:authors/id/D/DA/DAGOLDEN/ExtUtils-ParseXS-%v.tar.gz
-Source-MD5: 271b4413b1847568401393b7634b44ab
+Source-MD5: a821b311f479a6a2687fa8bb2c4a8689
 
 # Install Phase:
 UpdatePOD: true


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods soap-lite-pm.info, 1.16, 1.17

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv14738

Modified Files:
soap-lite-pm.info 
Log Message:
added missing deps

Index: soap-lite-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/soap-lite-pm.info,v
retrieving revision 1.16
retrieving revision 1.17
diff -u -d -r1.16 -r1.17
--- soap-lite-pm.info   8 Oct 2009 23:48:29 -   1.16
+++ soap-lite-pm.info   11 Feb 2010 02:58:17 -  1.17
@@ -2,12 +2,43 @@
 
 Package: soap-lite-pm%type_pkg[perl]
 version: 0.710.10
-Revision: 1
+Revision: 2
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
 Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5
 ###
-Depends: perl%type_pkg[perl]-core, libwww-pm%type_pkg[perl], mime-lite-pm, 
mime-tools-pm%type_pkg[perl] (= 6.106-1), compress-zlib-pm%type_pkg[perl], 
xml-parser-pm%type_pkg[perl], mime-base64-pm%type_pkg[perl], 
uri-pm%type_pkg[perl], getopt-long-pm%type_pkg[perl], libnet-pm%type_pkg[perl]
-BuildDepends: fink (= 0.20.1-1), test-harness-pm%type_pkg[perl], 
libwww-pm%type_pkg[perl], mime-lite-pm, mime-tools-pm%type_pkg[perl] (= 
6.106-1), compress-zlib-pm%type_pkg[perl], xml-parser-pm%type_pkg[perl], 
mime-base64-pm%type_pkg[perl], uri-pm%type_pkg[perl], 
getopt-long-pm%type_pkg[perl], libnet-pm%type_pkg[perl], 
perl%type_pkg[perl]-core
+Depends: 
+ perl%type_pkg[perl]-core, 
+ libwww-pm%type_pkg[perl], 
+ mime-lite-pm,
+ constant-pm (= 1.14-1),
+ mime-tools-pm%type_pkg[perl] (= 6.106-1), 
+ compress-zlib-pm%type_pkg[perl], 
+ xml-parser-pm%type_pkg[perl], 
+ mime-base64-pm%type_pkg[perl], 
+ uri-pm%type_pkg[perl], 
+ getopt-long-pm%type_pkg[perl], 
+ libnet-pm%type_pkg[perl],
+ task-weaken-pm%type_pkg[perl],
+ version-pm%type_pkg[perl]
+
+BuildDepends: 
+ fink (= 0.20.1-1), 
+ test-harness-pm%type_pkg[perl], 
+ libwww-pm%type_pkg[perl], 
+ mime-lite-pm,
+ constant-pm (= 1.14-1),
+ mime-tools-pm%type_pkg[perl] (= 6.106-1), 
+ compress-zlib-pm%type_pkg[perl], 
+ xml-parser-pm%type_pkg[perl], 
+ mime-base64-pm%type_pkg[perl], 
+ uri-pm%type_pkg[perl], 
+ getopt-long-pm%type_pkg[perl], 
+ libnet-pm%type_pkg[perl],
+ version-pm%type_pkg[perl],
+ task-weaken-pm%type_pkg[perl],
+ perl%type_pkg[perl]-core
+
+
 Conflicts: soap-lite-pm%type_pkg[perl], soap-lite-ssl-pm%type_pkg[perl]
 Replaces: soap-lite-pm (= 0.55-1), %{Ni}560, %{Ni}580, %{Ni}581, %{Ni}586
 


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[cvs] dists/10.4/unstable/main/finkinfo/sci kemboss-qt4.info,1.2,1.3

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv18613

Modified Files:
kemboss-qt4.info 
Log Message:
update for emboss 6.2.0

Index: kemboss-qt4.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/kemboss-qt4.info,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -d -r1.2 -r1.3
--- kemboss-qt4.info3 Aug 2009 22:46:27 -   1.2
+++ kemboss-qt4.info9 Feb 2010 00:21:46 -   1.3
@@ -1,20 +1,20 @@
 Info2: 
 Package: kemboss-qt4-%type_pkg[qt]
 Version: 0.10
-Revision: 1
+Revision: 2
 Type: qt (x11 mac)
 
 Depends: 
- emboss (= 6.0.1), 
+ emboss (= 6.2.0), 
  qt4-%type_pkg[qt]-gui-shlibs (= 4.5.1-1)
 
 
 BuildDepends: 
  fink (= 0.29.7-1), 
  qt4-%type_pkg[qt] (= 4.5.1-1),
- emboss-ajax6-shlibs (= 6.0.1), 
- emboss-nucleus6-shlibs (= 6.0.1), 
- emboss-plplot6-shlibs (= 6.0.1)
+ emboss-ajax6-shlibs (= 6.2.0), 
+ emboss-nucleus6-shlibs (= 6.2.0), 
+ emboss-plplot3-shlibs (= 6.2.0)
 
 
 Conflicts: kemboss (= 0.9-1)


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[cvs] dists/10.4/unstable/main/finkinfo/sci tcoffee.patch, 1.12, 1.13 tcoffee-10.4.info, 1.16, 1.17 tcoffee-10.5.info, 1.17, 1.18 tcoffee-10.6.info, 1.1, 1.2

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv9493

Modified Files:
tcoffee.patch tcoffee-10.4.info tcoffee-10.5.info 
tcoffee-10.6.info 
Log Message:
small fix in patch file

Index: tcoffee-10.6.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/tcoffee-10.6.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- tcoffee-10.6.info   11 Nov 2009 16:01:59 -  1.1
+++ tcoffee-10.6.info   6 Feb 2010 22:30:22 -   1.2
@@ -8,7 +8,7 @@
 Depends: soap-lite-pm588
 BuildDepends: fink (= 0.24.12) 
 PatchFile: %n.patch
-PatchFile-MD5: ef34ce08dec87f4ccfbd21a00745c718
+PatchFile-MD5: ee77b00e7680b4b9def05c0e1aa80591
 
 CompileScript: 
  ./install tcoffee -path=%p

Index: tcoffee-10.4.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/tcoffee-10.4.info,v
retrieving revision 1.16
retrieving revision 1.17
diff -u -d -r1.16 -r1.17
--- tcoffee-10.4.info   11 Nov 2009 16:01:59 -  1.16
+++ tcoffee-10.4.info   6 Feb 2010 22:30:22 -   1.17
@@ -8,7 +8,7 @@
 Depends: soap-lite-pm588
 BuildDepends: fink (= 0.24.12) 
 PatchFile: %n.patch
-PatchFile-MD5: ef34ce08dec87f4ccfbd21a00745c718
+PatchFile-MD5: ee77b00e7680b4b9def05c0e1aa80591
 
 CompileScript: 
  ./install tcoffee -path=%p

Index: tcoffee-10.5.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/tcoffee-10.5.info,v
retrieving revision 1.17
retrieving revision 1.18
diff -u -d -r1.17 -r1.18
--- tcoffee-10.5.info   11 Nov 2009 16:01:59 -  1.17
+++ tcoffee-10.5.info   6 Feb 2010 22:30:22 -   1.18
@@ -8,7 +8,7 @@
 Depends: soap-lite-pm588
 BuildDepends: fink (= 0.24.12) 
 PatchFile: %n.patch
-PatchFile-MD5: ef34ce08dec87f4ccfbd21a00745c718
+PatchFile-MD5: ee77b00e7680b4b9def05c0e1aa80591
 
 CompileScript: 
  ./install tcoffee -path=%p

Index: tcoffee.patch
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/tcoffee.patch,v
retrieving revision 1.12
retrieving revision 1.13
diff -u -d -r1.12 -r1.13
--- tcoffee.patch   4 Aug 2009 00:59:14 -   1.12
+++ tcoffee.patch   6 Feb 2010 22:30:22 -   1.13
@@ -1,7 +1,7 @@
-diff -Naur T-COFFEE_distribution_Version_8.06/install 
T-COFFEE_distribution_Version_8.06-patched/install
 T-COFFEE_distribution_Version_8.06/install 2009-06-03 19:49:15.0 
-0400
-+++ T-COFFEE_distribution_Version_8.06-patched/install 2009-06-10 
06:19:10.0 -0400
-@@ -546,6 +546,7 @@
+diff -Nurd T-COFFEE_distribution_Version_8.14/install 
T-COFFEE_distribution_Version_8.14-patched/install
+--- T-COFFEE_distribution_Version_8.14/install 2009-10-27 05:12:05.0 
-0400
 T-COFFEE_distribution_Version_8.14-patched/install 2010-02-06 
15:03:47.0 -0500
+@@ -545,6 +545,7 @@
  
  sub sign_license_ni
{


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods spreadsheet-parseexcel-pm.info, 1.16, 1.17

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv16771

Modified Files:
spreadsheet-parseexcel-pm.info 
Log Message:
new upstream

Index: spreadsheet-parseexcel-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/spreadsheet-parseexcel-pm.info,v
retrieving revision 1.16
retrieving revision 1.17
diff -u -d -r1.16 -r1.17
--- spreadsheet-parseexcel-pm.info  11 Dec 2009 00:27:47 -  1.16
+++ spreadsheet-parseexcel-pm.info  3 Feb 2010 00:08:45 -   1.17
@@ -1,11 +1,11 @@
 Info2: 
 Package: spreadsheet-parseexcel-pm%type_pkg[perl]
-Version: 0.56
+Version: 0.57
 Revision: 1
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
 Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5
 Source: mirror:cpan:authors/id/J/JM/JMCNAMARA/Spreadsheet-ParseExcel-%v.tar.gz
-Source-MD5: d091ce611fa65fb6d9a77a2a9b4110c5
+Source-MD5: d4eba5066a77e9f4736fe18a8dee3495
 Type: perl (5.8.1 5.8.4 5.8.6 5.8.8)
 UpdatePOD: true
 PatchScript: perl -0 
-pe's/^.*=head\d\s+(COPYRIGHT.*?)(=head\d.*|=cut.*|)$/$1/is' 
lib/Spreadsheet/ParseExcel.pm  COPYRIGHT


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods extutils-parsexs-pm.info, 1.3, 1.4

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv19856

Modified Files:
extutils-parsexs-pm.info 
Log Message:
new upstream

Index: extutils-parsexs-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/extutils-parsexs-pm.info,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- extutils-parsexs-pm.info22 Dec 2009 23:08:54 -  1.3
+++ extutils-parsexs-pm.info3 Feb 2010 00:25:58 -   1.4
@@ -1,5 +1,5 @@
 Package: extutils-parsexs-pm
-Version: 2.21
+Version: 2.2202
 Revision: 1
 Description: Converts Perl XS code into C code
 Type: perl
@@ -11,7 +11,7 @@
 
 # Unpack Phase:
 Source: mirror:cpan:authors/id/D/DA/DAGOLDEN/ExtUtils-ParseXS-%v.tar.gz
-Source-MD5: c36f6c429886f4610aa915845544857d
+Source-MD5: 271b4413b1847568401393b7634b44ab
 
 # Install Phase:
 UpdatePOD: true


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[cvs] dists/10.4/unstable/main/finkinfo/sci iolib.info,1.10,1.11

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv19885

Modified Files:
iolib.info 
Log Message:
new upstream

Index: iolib.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/iolib.info,v
retrieving revision 1.10
retrieving revision 1.11
diff -u -d -r1.10 -r1.11
--- iolib.info  22 Aug 2009 02:02:46 -  1.10
+++ iolib.info  3 Feb 2010 00:26:04 -   1.11
@@ -1,10 +1,10 @@
 Package: iolib
-Version: 1.12.1
+Version: 1.12.2
 Revision: 1
 Maintainer: Koen van der Drift drift...@users.sourceforge.net
 
 Source: mirror:sourceforge:staden/io_lib-%v.tar.gz
-Source-MD5: f511698b766d5bd7d15a8269bdcddf84
+Source-MD5: 369d9976d927076d6fde469acc355a9c
 SourceDirectory:io_lib-%v
 Depends: %N-shlibs (= %v-%r)
 
@@ -21,7 +21,7 @@
lib/libstaden-read.*.dylib
   
   Shlibs: 
-%p/lib/libstaden-read.1.dylib 2.0.0 %n (= 1.12.0-1)
+%p/lib/libstaden-read.1.dylib 3.0.0 %n (= 1.12.2-1)
   
 
 


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods data-section-pm.info, 1.1, 1.2

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv28379

Modified Files:
data-section-pm.info 
Log Message:
new upstream

Index: data-section-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/data-section-pm.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- data-section-pm.info23 Dec 2009 17:02:28 -  1.1
+++ data-section-pm.info30 Jan 2010 14:18:37 -  1.2
@@ -1,6 +1,6 @@
 Info2: 
 Package: data-section-pm%type_pkg[perl]
-Version: 0.093410
+Version: 0.100270
 Revision: 1
 Description: Read data out of your DATA section
 Architecture: (%type_pkg[perl] = 581) powerpc
@@ -9,31 +9,28 @@
 License: Artistic/GPL
 Maintainer: Koen van der Drift drift...@lists.sourceforge.net
 
-# Dependencies.
-# Dependencies.
 Depends: 
fink (= 0.28.0-1),
-   perl%type_pkg[perl]-core,
-   sub-exporter-pm%type_pkg[perl]
+   perl%type_pkg[perl]-core
 
 BuildDepends: 
-   fink (= 0.28.0-1),
-   perl%type_pkg[perl]-core
+   test-simple-pm%type_pkg[perl] (= 0.94-1),
+   mro-compat-pm%type_pkg[perl],
+   sub-exporter-pm%type_pkg[perl]
 
 
-# Unpack Phase:
 Source: mirror:cpan:authors/id/R/RJ/RJBS/Data-Section-%v.tar.gz
-Source-MD5: f9c39e6d85fb035e9d509b4fe2b2859b
+Source-MD5: b349fd7e5f47212faefe5bf31347d43e
 
-# Install Phase:
 InstallScript: 
  %{default_script}
  mv %i/share/man %i/lib/perl5/%type_raw[perl]
 
+
+#NoPerlTests: True
 UpdatePOD: true
 DocFiles: Changes README
 
-# Additional Data:
 DescDetail: 
  Read multiple hunks of data out of your DATA section
 


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[cvs] dists/10.4/unstable/main/finkinfo/graphics reportlab-py.info, 1.16, 1.17

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/graphics
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv27822

Modified Files:
reportlab-py.info 
Log Message:
fixed a few issues, thanks to Dan Macks for pointing these out

Index: reportlab-py.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/graphics/reportlab-py.info,v
retrieving revision 1.16
retrieving revision 1.17
diff -u -d -r1.16 -r1.17
--- reportlab-py.info   28 Jan 2010 22:50:25 -  1.16
+++ reportlab-py.info   29 Jan 2010 22:50:36 -  1.17
@@ -1,38 +1,47 @@
 Info2: 
 Package: reportlab-py%type_pkg[python]
 Version: 2.4
-Revision: 1
+Revision: 2
 Distribution: (%type_pkg[python] = 23) 10.4, (%type_pkg[python] = 24) 10.4, 
(%type_pkg[python] = 24) 10.5
 Type: python (2.3 2.4 2.5 2.6)
 Description: PDF creation library for Python
+
 Source: http://www.reportlab.org/ftp/ReportLab_2_4.tar.gz
 Source-MD5: e6dc4b0fbfb6814fe5960774cb5d
 SourceDirectory: ReportLab_2_4
-DocFiles: CHANGES.txt INSTALL.txt README.txt VERSION.txt LICENSE.txt
+Source2: http://www.reportlab.com/ftp/fonts/pfbfer.zip
+Source2-MD5: 9042d7091298313c9a8d87e1a30ac2c5
+Source2ExtractDir: ReportLab_2_4/src/reportlab/fonts/
+
 GCC: 4.0
 License: BSD
+
 BuildDepends: freetype219 (= 2.3.7-7)
-Depends: python%type_pkg[python], pil-py%type_pkg[python] (= 1.1.4-1027), 
freetype219-shlibs
+Depends: 
+ python%type_pkg[python], 
+ pil-py%type_pkg[python] (= 1.1.4-1027), 
+ freetype219-shlibs
+
+
 Enhances: python%type_pkg[python]
 Replaces: reportlab
+
 # Avoid having -I/sw/include before all other flags
 NoSetCPPFLAGS: true
-CompileScript: %p/bin/python%type_raw[python] setup.py build
+
+CompileScript: 
+ %p/bin/python%type_raw[python] setup.py build
+
+
 InstallScript: 
- %p/bin/python%type_raw[python] setup.py install --root=%d --no-compile
+ %p/bin/python%type_raw[python] setup.py install --root=%d 
  mkdir -p %i/share/doc/%n
  cp -R docs %i/share/doc/%n/docs
  cp -R demos %i/share/doc/%n/demos
  cp -R tests %i/share/doc/%n/tests
 
-PostInstScript: 
- %p/bin/python%type_raw[python] -c 'import 
compileall;compileall.compile_dir(%p/lib/python%type_raw[python]/site-packages/reportlab)'
- %p/bin/python%type_raw[python] -O -c 'import 
compileall;compileall.compile_dir(%p/lib/python%type_raw[python]/site-packages/reportlab)'
-
-PreRmScript: 
- find %p/lib/python%type_raw[python]/site-packages/reportlab -name \*.pyc | 
xargs rm -f
- find %p/lib/python%type_raw[python]/site-packages/reportlab -name \*.pyo | 
xargs rm -f
-
+
+DocFiles: CHANGES.txt INSTALL.txt README.txt VERSION.txt LICENSE.txt
 
 DescDetail: 
 The ReportLab Open Source PDF library.


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods version-pm.info, 1.14, 1.15

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv13913

Modified Files:
version-pm.info 
Log Message:
new upstream

Index: version-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/version-pm.info,v
retrieving revision 1.14
retrieving revision 1.15
diff -u -d -r1.14 -r1.15
--- version-pm.info 14 Jan 2010 03:29:24 -  1.14
+++ version-pm.info 28 Jan 2010 12:26:33 -  1.15
@@ -1,6 +1,6 @@
 Info2: 
 Package: version-pm%type_pkg[perl]
-Version: 0.79
+Version: 0.80
 Revision: 1
 Epoch: 1
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
@@ -19,7 +19,7 @@
 
 # Unpack Phase.
 Source: mirror:cpan:authors/id/J/JP/JPEACOCK/version-%v.tar.gz
-Source-MD5: 36ee81d168b5c2a1091ddfa3a2d0114a
+Source-MD5: 0add2a0132d582ad81d62b4e38fd3f92
 
 # Install Phase.
 InstallScript: 


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[cvs] dists/10.4/unstable/main/finkinfo/graphics reportlab-py.info, 1.15, 1.16

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/graphics
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv5818

Modified Files:
reportlab-py.info 
Log Message:
new upstream

Index: reportlab-py.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/graphics/reportlab-py.info,v
retrieving revision 1.15
retrieving revision 1.16
diff -u -d -r1.15 -r1.16
--- reportlab-py.info   23 Aug 2009 04:25:35 -  1.15
+++ reportlab-py.info   28 Jan 2010 22:50:25 -  1.16
@@ -1,13 +1,13 @@
 Info2: 
 Package: reportlab-py%type_pkg[python]
-Version: 2.3
+Version: 2.4
 Revision: 1
 Distribution: (%type_pkg[python] = 23) 10.4, (%type_pkg[python] = 24) 10.4, 
(%type_pkg[python] = 24) 10.5
 Type: python (2.3 2.4 2.5 2.6)
 Description: PDF creation library for Python
-Source: http://www.reportlab.org/ftp/ReportLab_2_3.tar.gz
-Source-MD5: 057b846bd3b7b2c3498bf14f6a523632
-SourceDirectory: ReportLab_2_3
+Source: http://www.reportlab.org/ftp/ReportLab_2_4.tar.gz
+Source-MD5: e6dc4b0fbfb6814fe5960774cb5d
+SourceDirectory: ReportLab_2_4
 DocFiles: CHANGES.txt INSTALL.txt README.txt VERSION.txt LICENSE.txt
 GCC: 4.0
 License: BSD


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[cvs] dists/10.4/unstable/main/finkinfo/libs python-mx-py.info, 1.13, 1.14

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv8821

Modified Files:
python-mx-py.info 
Log Message:
new upstream

Index: python-mx-py.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/python-mx-py.info,v
retrieving revision 1.13
retrieving revision 1.14
diff -u -d -r1.13 -r1.14
--- python-mx-py.info   22 Aug 2009 22:20:21 -  1.13
+++ python-mx-py.info   29 Jan 2010 03:53:42 -  1.14
@@ -1,6 +1,6 @@
 Info2: 
 Package: python-mx-py%type_pkg[python]
-Version: 3.1.2
+Version: 3.1.3
 Revision: 1
 Distribution: (%type_pkg[python] = 23) 10.4, (%type_pkg[python] = 24) 10.4, 
(%type_pkg[python] = 24) 10.5
 Maintainer: Koen van der Drift drift...@users.sourceforge.net
@@ -8,7 +8,7 @@
 Replaces: python-mx ( %v-%r)
 Type: python (2.3 2.4 2.5 2.6)
 Source: http://downloads.egenix.com/python/egenix-mx-base-%v.tar.gz
-Source-MD5: b18b621deb07d503668ba0745e7af971
+Source-MD5: 398d6f8d62029f5bea4f94765a6ab4c8
 SetCFlags: -Wno-long-double
 CompileScript: %p/bin/python%type_raw[python] setup.py build   
 InstallScript:  


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[cvs] dists/10.4/unstable/main/finkinfo/sci emboss.info, 1.33, 1.34 emboss.patch, 1.16, 1.17

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv3152

Modified Files:
emboss.info emboss.patch 
Log Message:
new upstream, crossing my fingers :)

Index: emboss.patch
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/emboss.patch,v
retrieving revision 1.16
retrieving revision 1.17
diff -u -d -r1.16 -r1.17
--- emboss.patch6 Dec 2009 09:31:32 -   1.16
+++ emboss.patch25 Jan 2010 13:33:20 -  1.17
@@ -1,1132 +1,67 @@
-diff -Naur EMBOSS-6.1.0/ajax/Makefile.in EMBOSS-6.1.0-patched/ajax/Makefile.in
 EMBOSS-6.1.0/ajax/Makefile.in  2009-07-14 19:15:58.0 -0400
-+++ EMBOSS-6.1.0-patched/ajax/Makefile.in  2009-12-06 03:14:06.0 
-0500
-@@ -103,7 +103,7 @@
-   $(libajax_la_LDFLAGS) $(LDFLAGS) -o $@
- @iscygwin_fa...@am_libajax_la_rpath = -rpath $(libdir)
- @iscygwin_t...@am_libajax_la_rpath = -rpath $(libdir)
+Binary files EMBOSS-6.2.0/ajax/.DS_Store and 
EMBOSS-6.2.0-patched/ajax/.DS_Store differ
+diff -Nurd EMBOSS-6.2.0/ajax/acd/Makefile.in 
EMBOSS-6.2.0-patched/ajax/acd/Makefile.in
+--- EMBOSS-6.2.0/ajax/acd/Makefile.in  2010-01-15 05:54:39.0 -0500
 EMBOSS-6.2.0-patched/ajax/acd/Makefile.in  2010-01-24 08:32:58.0 
-0500
[...1155 lines suppressed...]
 EMBOSS-6.2.0-patched/nucleus/Makefile.in   2010-01-24 07:46:36.0 
-0500
 @@ -72,7 +72,7 @@
sed '$$!N;$$!N;$$!N;$$!N;s/\n/ /g'
  am__installdirs = $(DESTDIR)$(libdir) $(DESTDIR)$(includedir)
  LTLIBRARIES = $(lib_LTLIBRARIES)
 -libnucleus_la_LIBADD =
-+libnucleus_la_LIBADD = ../ajax/libajax.la
++libnucleus_la_LIBADD = ../ajax/core/libajax.la ../ajax/graphics/libajaxg.la 
../ajax/ajaxdb/libajaxdb.la ../ajax/acd/libacd.la
  am__objects_1 = embaln.lo embcom.lo embcons.lo embdata.lo embdbi.lo \
embdmx.lo embdomain.lo embest.lo embexit.lo embgroup.lo \
embiep.lo embindex.lo embinit.lo embmat.lo embmisc.lo \
-diff -Naur EMBOSS-6.1.0/plplot/Makefile.in 
EMBOSS-6.1.0-patched/plplot/Makefile.in
 EMBOSS-6.1.0/plplot/Makefile.in2009-07-14 19:16:02.0 -0400
-+++ EMBOSS-6.1.0-patched/plplot/Makefile.in2009-12-06 03:07:39.0 
-0500
+diff -Nurd EMBOSS-6.2.0/plplot/Makefile.in 
EMBOSS-6.2.0-patched/plplot/Makefile.in
+--- EMBOSS-6.2.0/plplot/Makefile.in2010-01-15 05:54:43.0 -0500
 EMBOSS-6.2.0-patched/plplot/Makefile.in2010-01-23 17:44:52.0 
-0500
 @@ -71,7 +71,7 @@
sed '$$!N;$$!N;$$!N;$$!N;s/\n/ /g'
  am__installdirs = $(DESTDIR)$(libdir) $(DESTDIR)$(pkgincludedir)

Index: emboss.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/emboss.info,v
retrieving revision 1.33
retrieving revision 1.34
diff -u -d -r1.33 -r1.34
--- emboss.info 6 Dec 2009 09:31:32 -   1.33
+++ emboss.info 25 Jan 2010 13:33:20 -  1.34
@@ -1,6 +1,6 @@
 Package: emboss
-Version: 6.1.0
-Revision: 4
+Version: 6.2.0
+Revision: 1
 #Distribution: 10.4, 10.5
 Depends: 
  %N-ajax6-shlibs (= %v-%r), 
@@ -12,7 +12,6 @@
  libjpeg-shlibs, 
  gd2-shlibs, 
  system-java (= 1.5.0), 
- expat1-shlibs, 
  fontconfig2-shlibs (= 2.4.1-1),
  freetype219-shlibs (= 2.3.8-2),
  libiconv
@@ -25,7 +24,6 @@
  x11-dev, 
  system-java-dev (= 1.5.0), 
  freetype219, 
- expat1, 
  fontconfig2-dev (= 2.4.1-1),
  freetype219 (= 2.3.8-2),
  fink (= 0.24.12)
@@ -34,14 +32,12 @@
 CustomMirror: 
   Primary: ftp://emboss.open-bio.org/pub/EMBOSS/
 
-Source-MD5: 6c5163c571bc0be94d64420ce0d71824
-Source2: ftp://emboss.open-bio.org/pub/EMBOSS/fixes/client.jar
-Source2-MD5: 01b8ae4b36ee465206f8911e13677a87
+Source-MD5: 2e2937dd0493814ca0f64981f4c79319
 
 #SetCPPFLAGS: -Dstat64=stat
 
 PatchFile: %n.patch
-PatchFile-MD5: 8d3430963375ed7c192112faa369332e
+PatchFile-MD5: 883f84abeba1ecc40bbc4960fe49241c
 
 ConfigureParams: 
  --with-java=/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home \
@@ -50,32 +46,46 @@
  --libdir=%p/lib/EMBOSS
 
 
-CompileScript: 
- mv ../client.jar %b/jemboss/lib/
- ./configure %c
- make
-
-
 Installscript: 
   make install DESTDIR=%d
   mkdir -p %i/include/EMBOSS
   mv %i/include/*.* %i/include/EMBOSS/
-  ln -s EMBOSS/lib{ajax,ajaxg,nucleus,eplplot}.dylib %i/lib
+  ln -s 
EMBOSS/lib{ajax,ajaxg,ajaxdb,nucleus,eplplot,acd,eexpat,ensemble,epcre,ezlib}.dylib
 %i/lib
   mv %i/lib/EMBOSS/*.*a %i/lib
 
 
 SplitOff10: 
   Package: %N-ajax6-shlibs
-  Depends: %N-plplot3-shlibs (= %v-%r), libpng3-shlibs, libjpeg-shlibs, 
gd2-shlibs, libiconv, x11-shlibs, fontconfig2-shlibs (= 2.4.1-1), 
freetype219-shlibs (= 2.3.8-2)
-
+  Depends: 
+%N-plplot3-shlibs (= %v-%r), 
+libpng3-shlibs, 
+libjpeg-shlibs, 
+gd2-shlibs, 
+libiconv, 
+x11-shlibs, 
+fontconfig2-shlibs (= 2.4.1-1), 
+freetype219-shlibs (= 2.3.8-2)
+
   DocFiles: ChangeLog COPYING README
   Files: 
 

[cvs] dists/10.4/unstable/main/finkinfo/sci emboss.info,1.34,1.35

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv22508

Modified Files:
emboss.info 
Log Message:
typo

Index: emboss.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/emboss.info,v
retrieving revision 1.34
retrieving revision 1.35
diff -u -d -r1.34 -r1.35
--- emboss.info 25 Jan 2010 13:33:20 -  1.34
+++ emboss.info 25 Jan 2010 19:21:37 -  1.35
@@ -80,7 +80,7 @@
   Shlibs: 
 %p/lib/EMBOSS/libajax.6.dylib 7.0.0 %n (= 6.2.0-1)
 %p/lib/EMBOSS/libajaxdb.6.dylib 7.0.0 %n (= 6.2.0-1)
-%p/lib/EMBOSS/libajaxg.6.dylib 7.0.0 %n (= 6.2.0-4)
+%p/lib/EMBOSS/libajaxg.6.dylib 7.0.0 %n (= 6.2.0-1)
 %p/lib/EMBOSS/libacd.6.dylib 7.0.0 %n (= 6.2.0-1)
 %p/lib/EMBOSS/libensembl.6.dylib 7.0.0 %n (= 6.2.0-1)
 %p/lib/EMBOSS/libeexpat.1.dylib 3.0.0 %n (= 6.2.0-1)


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods module-build-pm.info, 1.21, 1.22 module-build-pm-10.4.info, 1.11, 1.12 module-build-pm-10.5.info, 1.13, 1.14 module-build-pm-10.6.info, 1.8, 1.9

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv5721

Modified Files:
module-build-pm.info module-build-pm-10.4.info 
module-build-pm-10.5.info module-build-pm-10.6.info 
Log Message:
new upstream version

Index: module-build-pm-10.5.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/module-build-pm-10.5.info,v
retrieving revision 1.13
retrieving revision 1.14
diff -u -d -r1.13 -r1.14
--- module-build-pm-10.5.info   28 Aug 2009 02:16:23 -  1.13
+++ module-build-pm-10.5.info   19 Jan 2010 03:22:52 -  1.14
@@ -1,5 +1,5 @@
 Package: module-build-pm
-Version: 0.35
+Version: 0.36
 Revision: 201
 Epoch: 1
 Distribution: 10.5

Index: module-build-pm-10.4.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/module-build-pm-10.4.info,v
retrieving revision 1.11
retrieving revision 1.12
diff -u -d -r1.11 -r1.12
--- module-build-pm-10.4.info   28 Aug 2009 02:16:23 -  1.11
+++ module-build-pm-10.4.info   19 Jan 2010 03:22:52 -  1.12
@@ -1,5 +1,5 @@
 Package: module-build-pm
-Version: 0.35
+Version: 0.36
 Revision: 101
 Epoch: 1
 Distribution: 10.4

Index: module-build-pm-10.6.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/module-build-pm-10.6.info,v
retrieving revision 1.8
retrieving revision 1.9
diff -u -d -r1.8 -r1.9
--- module-build-pm-10.6.info   28 Aug 2009 02:16:23 -  1.8
+++ module-build-pm-10.6.info   19 Jan 2010 03:22:52 -  1.9
@@ -1,5 +1,5 @@
 Package: module-build-pm
-Version: 0.35
+Version: 0.36
 Revision: 301
 Epoch: 1
 Distribution: 10.6

Index: module-build-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/module-build-pm.info,v
retrieving revision 1.21
retrieving revision 1.22
diff -u -d -r1.21 -r1.22
--- module-build-pm.info28 Aug 2009 02:16:23 -  1.21
+++ module-build-pm.info19 Jan 2010 03:22:52 -  1.22
@@ -1,6 +1,6 @@
 Info2: 
 Package: module-build-pm%type_pkg[perl]
-Version: 0.35
+Version: 0.36
 Revision: 1
 Epoch: 1
 Architecture: (%type_pkg[perl] = 581) powerpc
@@ -13,13 +13,17 @@
 
 # Dependencies.
 Depends: 
- archive-tar-pm%type_pkg[perl], 
- extutils-parsexs-pm, par-dist-pm, 
+ archive-tar-pm%type_pkg[perl],
+ extutils-install-pm (= 1.54),
+ extutils-manifest-pm (= 1.57),
+ extutils-parsexs-pm (= 2.21), 
+ par-dist-pm, 
  pod-readme-pm, 
  perl%type_pkg[perl]-core, 
+ software-license-pm%type_pkg[perl],
  test-harness-pm%type_pkg[perl] (= 3.16), 
- version-pm%type_pkg[perl] (= 0.74), 
- yaml-pm
+ version-pm%type_pkg[perl] (= 0.74),
+ yaml-tiny-pm (= 1.38)
 
 
 # module-signature-pm has lots of (maybe even crypto) deps and it's optional
@@ -29,7 +33,7 @@
 
 # Unpack Phase.
 Source: mirror:cpan:authors/id/D/DA/DAGOLDEN/Module-Build-%v.tar.gz
-Source-MD5: d1ba4831d9c5feca34e49c529158e8db
+Source-MD5: 81506e0dd1a97c224209492fabed9755
 
 # Compile Phase.
 CompileScript: 


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[cvs] dists/10.4/unstable/main/finkinfo/sci eigen2.info,1.15,1.16

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv14932

Modified Files:
eigen2.info 
Log Message:
new upstream

Index: eigen2.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/eigen2.info,v
retrieving revision 1.15
retrieving revision 1.16
diff -u -d -r1.15 -r1.16
--- eigen2.info 11 Dec 2009 00:24:48 -  1.15
+++ eigen2.info 17 Jan 2010 17:20:40 -  1.16
@@ -1,5 +1,5 @@
 Package: eigen2
-Version: 2.0.10
+Version: 2.0.11
 Revision: 1
 Maintainer: Koen van der Drift drift...@users.sourceforge.net
 BuildDepends: cmake (= 2.6.2)
@@ -7,7 +7,7 @@
 
 SourceDirectory: eigen
 Source: http://bitbucket.org/eigen/eigen/get/%v.bz2
-Source-MD5: 4b73cd71a887b7e501fa9c4760e3d33a
+Source-MD5: 60fc0cc5135f6e7a8c87e356119eed06
 SourceRename: %n-%v.tar.bz2
 CompileScript: 
  #!/bin/sh -ev


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods digest-sha-pm.info, 1.6, 1.7 version-pm.info, 1.13, 1.14

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv25930

Modified Files:
digest-sha-pm.info version-pm.info 
Log Message:
new upstream

Index: digest-sha-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/digest-sha-pm.info,v
retrieving revision 1.6
retrieving revision 1.7
diff -u -d -r1.6 -r1.7
--- digest-sha-pm.info  13 Sep 2009 21:48:27 -  1.6
+++ digest-sha-pm.info  14 Jan 2010 03:29:24 -  1.7
@@ -1,6 +1,6 @@
 Info2: 
 Package: digest-sha-pm%type_pkg[perl]
-Version: 5.47
+Version: 5.48
 Revision: 1
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
 Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5
@@ -8,12 +8,12 @@
 Type: perl (5.8.1 5.8.4 5.8.6 5.8.8)
 
 Depends: digest-pm%type_pkg[perl], perl%type_pkg[perl]-core
-BuildDepends: digest-pm%type_pkg[perl], fink (= 0.20.1-1)
+BuildDepends: digest-pm%type_pkg[perl], test-pod-coverage-pm, test-pod-pm, 
fink (= 0.20.1-1)
 Replaces: digest-sha1-pm (= 2.02-1), %N-man
 Conflicts: %N-man
 
 Source: mirror:cpan:modules/by-module/Digest/Digest-SHA-%v.tar.gz
-Source-MD5: 03ff8e4ea73a1c2c5de005d5e4160e94
+Source-MD5: a7ec2c09a58a68dbf419aa191567d75e
 
 UpdatePOD: true
 DocFiles: Changes MANIFEST README

Index: version-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/version-pm.info,v
retrieving revision 1.13
retrieving revision 1.14
diff -u -d -r1.13 -r1.14
--- version-pm.info 26 Oct 2009 02:30:45 -  1.13
+++ version-pm.info 14 Jan 2010 03:29:24 -  1.14
@@ -1,6 +1,6 @@
 Info2: 
 Package: version-pm%type_pkg[perl]
-Version: 0.78
+Version: 0.79
 Revision: 1
 Epoch: 1
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
@@ -19,7 +19,7 @@
 
 # Unpack Phase.
 Source: mirror:cpan:authors/id/J/JP/JPEACOCK/version-%v.tar.gz
-Source-MD5: be60db0db0cd4707d8794d5a3d577d0f
+Source-MD5: 36ee81d168b5c2a1091ddfa3a2d0114a
 
 # Install Phase.
 InstallScript: 


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[cvs] dists/10.4/unstable/main/finkinfo/x11 kaptain.info,1.3,1.4

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv28332

Modified Files:
kaptain.info 
Log Message:
fix for cases when X11 libs were not found on 10.6, thanks to monipol

Index: kaptain.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/x11/kaptain.info,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- kaptain.info10 Nov 2007 22:16:51 -  1.3
+++ kaptain.info6 Jan 2010 11:10:45 -   1.4
@@ -12,7 +12,8 @@
 #InfoDocs: kaptain.info
 
 SetLDFLAGS: 
-Wl,-dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
-ConfigureParams: --infodir=%p/share/info --with-qt-includes=%p/include/qt 
--with-qt-libraries=%p/lib/qt3  --with-qt-dir=%p 
--with-extra-includes=%p/include --with-extra-libs=%p/lib 
+ConfigureParams: --infodir=%p/share/info --with-qt-includes=%p/include/qt 
--with-qt-libraries=%p/lib/qt3  --with-qt-dir=%p 
--with-extra-includes=%p/include --with-extra-libs=%p/lib 
--x-includes=/usr/X11R6/include --x-libraries=/usr/X11R6/lib
+
 CompileScript: 
  ./configure %c
  make


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[cvs] dists/10.4/unstable/main/finkinfo/libs/rubymods bioruby-rb.info, 1.9, 1.10

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/rubymods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv26877

Modified Files:
bioruby-rb.info 
Log Message:
new upstream

Index: bioruby-rb.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/rubymods/bioruby-rb.info,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -d -r1.9 -r1.10
--- bioruby-rb.info 8 Sep 2009 23:47:41 -   1.9
+++ bioruby-rb.info 31 Dec 2009 18:01:14 -  1.10
@@ -1,6 +1,6 @@
 Info2: 
 Package: bioruby-rb%type_pkg[ruby]
-Version: 1.3.1
+Version: 1.4.0
 Revision: 1
 Type: ruby (1.8)
 Description: Open source bioinformatics library for Ruby
@@ -13,7 +13,7 @@
 
 # Unpack Phase:
 Source: http://bioruby.org/archive/bioruby-%v.tar.gz
-Source-MD5: 527e9e73258a7e1901928e2b06487ea4
+Source-MD5: bd6437e8a8eae181cc38e95c6cde928b
 
 # Compile Phase:
 CompileScript: 


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods software-license-pm.info, NONE, 1.1 extutils-manifest-pm.info, NONE, 1.1 data-section-pm.info, NONE, 1.1

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv8121

Added Files:
software-license-pm.info extutils-manifest-pm.info 
data-section-pm.info 
Log Message:
new packages

--- NEW FILE: data-section-pm.info ---
Info2: 
Package: data-section-pm%type_pkg[perl]
Version: 0.093410
Revision: 1
Description: Read data out of your DATA section
Architecture: (%type_pkg[perl] = 581) powerpc
Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 586) 10.4, 
(%type_pkg[perl] = 586) 10.5, (%type_pkg[perl] = 5100) 10.5, (%type_pkg[perl] = 
5100) 10.6
Type: perl (5.8.1 5.8.6 5.8.8 5.10.0)
License: Artistic/GPL
Maintainer: Koen van der Drift drift...@lists.sourceforge.net

# Dependencies.
# Dependencies.
Depends: 
fink (= 0.28.0-1),
perl%type_pkg[perl]-core,
sub-exporter-pm%type_pkg[perl]

BuildDepends: 
fink (= 0.28.0-1),
perl%type_pkg[perl]-core


# Unpack Phase:
Source: mirror:cpan:authors/id/R/RJ/RJBS/Data-Section-%v.tar.gz
Source-MD5: f9c39e6d85fb035e9d509b4fe2b2859b

# Install Phase:
InstallScript: 
 %{default_script}
 mv %i/share/man %i/lib/perl5/%type_raw[perl]

UpdatePOD: true
DocFiles: Changes README

# Additional Data:
DescDetail: 
 Read multiple hunks of data out of your DATA section

Homepage: http://search.cpan.org/dist/Data-Section/

--- NEW FILE: extutils-manifest-pm.info ---
Package: extutils-manifest-pm
Version: 1.58
Revision: 1
Description: Utilities to write and check a MANIFEST file
Type: perl
License: Artistic
Maintainer: Koen van der Drift drift...@lists.sourceforge.net

# Dependencies.

# Unpack Phase:
Source: mirror:cpan:authors/id/R/RK/RKOBES/ExtUtils-Manifest-%v.tar.gz
Source-MD5: 1644112b9ac75822d820b047c968edd9
# Install Phase:
UpdatePOD: true
DocFiles: Changes README

# Additional Data:
DescDetail: 
ExtUtils::Manifest provides a number of utilities to write and check a
MANIFEST file. At present the list includes mkmanifest, manicheck,
filecheck, fullcheck, skipcheck, manifind, maniread, manicopy, and
maniadd.

Homepage: http://search.cpan.org/dist/ExtUtils-Manifest/

--- NEW FILE: software-license-pm.info ---
Info2: 
Package: software-license-pm%type_pkg[perl]
Version: 0.012
Revision: 1
Description: Common open source software licenses
Architecture: (%type_pkg[perl] = 581) powerpc
Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 586) 10.4, 
(%type_pkg[perl] = 586) 10.5, (%type_pkg[perl] = 5100) 10.5, (%type_pkg[perl] = 
5100) 10.6
Type: perl (5.8.1 5.8.6 5.8.8 5.10.0)
License: Artistic/GPL
Maintainer: Koen van der Drift drift...@lists.sourceforge.net

# Dependencies.
Depends: 
data-section-pm%type_pkg[perl],
fink (= 0.28.0-1),
perl%type_pkg[perl]-core,
sub-install-pm%type_pkg[perl],
text-template-pm

BuildDepends: 
fink (= 0.28.0-1),
perl%type_pkg[perl]-core


# Unpack Phase:
Source: mirror:cpan:authors/id/R/RJ/RJBS/Software-License-%v.tar.gz
Source-MD5: 8232072eec55b331b0a56adc253dfa12

# Install Phase:
InstallScript: 
 %{default_script}
 mv %i/share/man %i/lib/perl5/%type_raw[perl]

UpdatePOD: true
DocFiles: Changes README

# Additional Data:
DescDetail: 
 Software-License contains templates for common open source software
 licenses.

Homepage: http://search.cpan.org/dist/Software-License/


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods extutils-parsexs-pm.info, 1.2, 1.3

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv9471

Modified Files:
extutils-parsexs-pm.info 
Log Message:
new upstream, take over maintainership

Index: extutils-parsexs-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/extutils-parsexs-pm.info,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -d -r1.2 -r1.3
--- extutils-parsexs-pm.info15 Jul 2008 01:41:19 -  1.2
+++ extutils-parsexs-pm.info22 Dec 2009 23:08:54 -  1.3
@@ -1,17 +1,17 @@
 Package: extutils-parsexs-pm
-Version: 2.19
+Version: 2.21
 Revision: 1
 Description: Converts Perl XS code into C code
 Type: perl
 License: Artistic/GPL
-Maintainer: None fink-de...@lists.sourceforge.net
+Maintainer: Koen van der Drift drift...@lists.sourceforge.net
 
 # Dependencies.
 Depends: extutils-cbuilder-pm
 
 # Unpack Phase:
-Source: mirror:cpan:authors/id/K/KW/KWILLIAMS/ExtUtils-ParseXS-%v.tar.gz
-Source-MD5: f236a751551e5288b4061352e3424b7a
+Source: mirror:cpan:authors/id/D/DA/DAGOLDEN/ExtUtils-ParseXS-%v.tar.gz
+Source-MD5: c36f6c429886f4610aa915845544857d
 
 # Install Phase:
 UpdatePOD: true


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[cvs] dists/10.4/unstable/main/finkinfo/libs/pythonmods biopython-py.info, 1.13, 1.14

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/pythonmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv17549

Modified Files:
biopython-py.info 
Log Message:
new upstream

Index: biopython-py.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/pythonmods/biopython-py.info,v
retrieving revision 1.13
retrieving revision 1.14
diff -u -d -r1.13 -r1.14
--- biopython-py.info   24 Sep 2009 03:12:07 -  1.13
+++ biopython-py.info   23 Dec 2009 00:14:29 -  1.14
@@ -1,6 +1,6 @@
 Info2: 
 Package: biopython-py%type_pkg[python]
-Version: 1.52
+Version: 1.53
 Revision: 1
 Distribution: (%type_pkg[python] = 24) 10.4, (%type_pkg[python] = 24) 10.5
 Type: python (2.4 2.5 2.6)
@@ -8,7 +8,7 @@
 BuildDepends: flex
 Replaces: python-biopython-py%type_pkg[python]
 Source: http://biopython.org/DIST/biopython-%v.tar.gz
-Source-MD5: 87e31749d431ed8a2d4fa909a42a478f
+Source-MD5: df1004ec64b9b593c0e690c14a20667a
 
 #Patch: %{ni}.patch
 CompileScript: %p/bin/python%type_raw[python] setup.py build
@@ -24,8 +24,8 @@
 
 Description: Python tools for computational biology
 DescDetail: 
- The Biopython Project is an international association of developers 
- of freely available Python tools for computational molecular biology. 
+ Biopython is a set of freely available tools for biological computation
+ written in Python by an international team of developers.
  The web site http://biopython.org provides an online resource for modules, 
  scripts, and web links for developers of Python-based software for 
  life science research.


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[cvs] dists/10.4/unstable/main/finkinfo/sci eigen2.info,1.14,1.15

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv25876

Modified Files:
eigen2.info 
Log Message:
upstream update

Index: eigen2.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/eigen2.info,v
retrieving revision 1.14
retrieving revision 1.15
diff -u -d -r1.14 -r1.15
--- eigen2.info 20 Nov 2009 15:54:10 -  1.14
+++ eigen2.info 11 Dec 2009 00:24:48 -  1.15
@@ -1,13 +1,13 @@
 Package: eigen2
-Version: 2.0.9
+Version: 2.0.10
 Revision: 1
 Maintainer: Koen van der Drift drift...@users.sourceforge.net
 BuildDepends: cmake (= 2.6.2)
 BuildDependsOnly: true
 
-SourceDirectory: eigen2
+SourceDirectory: eigen
 Source: http://bitbucket.org/eigen/eigen/get/%v.bz2
-Source-MD5: 1bd61df37b405c802cb9f22973976b82
+Source-MD5: 4b73cd71a887b7e501fa9c4760e3d33a
 SourceRename: %n-%v.tar.bz2
 CompileScript: 
  #!/bin/sh -ev


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods spreadsheet-parseexcel-pm.info, 1.15, 1.16

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv27246

Modified Files:
spreadsheet-parseexcel-pm.info 
Log Message:
new upstream

Index: spreadsheet-parseexcel-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/spreadsheet-parseexcel-pm.info,v
retrieving revision 1.15
retrieving revision 1.16
diff -u -d -r1.15 -r1.16
--- spreadsheet-parseexcel-pm.info  8 Oct 2009 23:52:26 -   1.15
+++ spreadsheet-parseexcel-pm.info  11 Dec 2009 00:27:47 -  1.16
@@ -1,11 +1,11 @@
 Info2: 
 Package: spreadsheet-parseexcel-pm%type_pkg[perl]
-Version: 0.55
+Version: 0.56
 Revision: 1
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
 Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5
 Source: mirror:cpan:authors/id/J/JM/JMCNAMARA/Spreadsheet-ParseExcel-%v.tar.gz
-Source-MD5: 6c88512797bfa7f4065992e5c6369956
+Source-MD5: d091ce611fa65fb6d9a77a2a9b4110c5
 Type: perl (5.8.1 5.8.4 5.8.6 5.8.8)
 UpdatePOD: true
 PatchScript: perl -0 
-pe's/^.*=head\d\s+(COPYRIGHT.*?)(=head\d.*|=cut.*|)$/$1/is' 
lib/Spreadsheet/ParseExcel.pm  COPYRIGHT


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[cvs] dists/10.4/unstable/main/finkinfo/sci eigen2.info,1.13,1.14

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv15577

Modified Files:
eigen2.info 
Log Message:
upstream source location change

Index: eigen2.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/eigen2.info,v
retrieving revision 1.13
retrieving revision 1.14
diff -u -d -r1.13 -r1.14
--- eigen2.info 11 Nov 2009 15:46:42 -  1.13
+++ eigen2.info 20 Nov 2009 15:54:10 -  1.14
@@ -6,8 +6,8 @@
 BuildDependsOnly: true
 
 SourceDirectory: eigen2
-Source: http://bitbucket.org/eigen/eigen2/get/%v.bz2
-Source-MD5: 2d89147b0ac10ac2520429aeb8f84b9d
+Source: http://bitbucket.org/eigen/eigen/get/%v.bz2
+Source-MD5: 1bd61df37b405c802cb9f22973976b82
 SourceRename: %n-%v.tar.bz2
 CompileScript: 
  #!/bin/sh -ev


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[cvs] dists/10.4/unstable/main/finkinfo/sci eigen2.info,1.12,1.13

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv17427

Modified Files:
eigen2.info 
Log Message:
new upstream

Index: eigen2.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/eigen2.info,v
retrieving revision 1.12
retrieving revision 1.13
diff -u -d -r1.12 -r1.13
--- eigen2.info 8 Oct 2009 23:45:48 -   1.12
+++ eigen2.info 11 Nov 2009 15:46:42 -  1.13
@@ -1,5 +1,5 @@
 Package: eigen2
-Version: 2.0.6
+Version: 2.0.9
 Revision: 1
 Maintainer: Koen van der Drift drift...@users.sourceforge.net
 BuildDepends: cmake (= 2.6.2)
@@ -7,7 +7,7 @@
 
 SourceDirectory: eigen2
 Source: http://bitbucket.org/eigen/eigen2/get/%v.bz2
-Source-MD5: 0673563a5e7f74ae4ee130553458b81e
+Source-MD5: 2d89147b0ac10ac2520429aeb8f84b9d
 SourceRename: %n-%v.tar.bz2
 CompileScript: 
  #!/bin/sh -ev


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[cvs] dists/10.4/unstable/main/finkinfo/sci tcoffee-10.6.info, NONE, 1.1 tcoffee-10.4.info, 1.15, 1.16 tcoffee-10.5.info, 1.16, 1.17

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv19832

Modified Files:
tcoffee-10.4.info tcoffee-10.5.info 
Added Files:
tcoffee-10.6.info 
Log Message:
new upstream and added 10.6 version

--- NEW FILE: tcoffee-10.6.info ---
Package: tcoffee
Version: 8.14
Revision: 1001
Distribution: 10.6
Source: http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_%v.tar.gz
Source-MD5: ab2c4ba0941a5f4074a695f3b806fc4b
Sourcedirectory: T-COFFEE_distribution_Version_%v
Depends: soap-lite-pm588
BuildDepends: fink (= 0.24.12) 
PatchFile: %n.patch
PatchFile-MD5: ef34ce08dec87f4ccfbd21a00745c718

CompileScript: 
 ./install tcoffee -path=%p


InstallScript: 
 mkdir -p %i/bin
 cp t_coffee_source/t_coffee %i/bin

 mkdir -p %i/share/%n
 cp -R example html %i/share/%n


DocFiles: doc/* license.txt
Description: T-Coffee Multiple Sequence Alignment Program
DescDetail: 
T-Coffee computes multiple sequence alignments for protein or dna/rna
sequences. It is considerably slower than ClustalW but does a better
job aligning more distantly related sequences (30% identity).  There
are also some enhancements for cDNA alignments.
Previous maintainer: Jason Stajich

DescUsage: 
 Before running T-coffee, issue the following two commands:
 
 cp -R %p/share/%n/t_coffee/ ~/.t_coffee
 sudo chown -R your_username ~/.t_coffee/
 
 T-coffee can be started by the command t_coffee.

License: GPL
Maintainer: Koen van der Drift drift...@users.sourceforge.net
Homepage: http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html

Index: tcoffee-10.4.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/tcoffee-10.4.info,v
retrieving revision 1.15
retrieving revision 1.16
diff -u -d -r1.15 -r1.16
--- tcoffee-10.4.info   10 Oct 2009 21:28:29 -  1.15
+++ tcoffee-10.4.info   11 Nov 2009 16:01:59 -  1.16
@@ -1,9 +1,9 @@
 Package: tcoffee
-Version: 8.13
+Version: 8.14
 Revision: 1
 Distribution: 10.4
 Source: http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_%v.tar.gz
-Source-MD5: f2510efd8d69d197804656a360d5119f
+Source-MD5: ab2c4ba0941a5f4074a695f3b806fc4b
 Sourcedirectory: T-COFFEE_distribution_Version_%v
 Depends: soap-lite-pm588
 BuildDepends: fink (= 0.24.12) 

Index: tcoffee-10.5.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/tcoffee-10.5.info,v
retrieving revision 1.16
retrieving revision 1.17
diff -u -d -r1.16 -r1.17
--- tcoffee-10.5.info   10 Oct 2009 21:28:29 -  1.16
+++ tcoffee-10.5.info   11 Nov 2009 16:01:59 -  1.17
@@ -1,9 +1,9 @@
 Package: tcoffee
-Version: 8.13
+Version: 8.14
 Revision: 101
 Distribution: 10.5
 Source: http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_%v.tar.gz
-Source-MD5: f2510efd8d69d197804656a360d5119f
+Source-MD5: ab2c4ba0941a5f4074a695f3b806fc4b
 Sourcedirectory: T-COFFEE_distribution_Version_%v
 Depends: soap-lite-pm588
 BuildDepends: fink (= 0.24.12) 


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[cvs] dists/10.4/stable/main/finkinfo/libs/perlmods test-simple-pm.info, 1.13, 1.14

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/libs/perlmods
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv26065

Modified Files:
test-simple-pm.info 
Log Message:
fix circular build dependency, thanks to Daniel Johnson

Index: test-simple-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/stable/main/finkinfo/libs/perlmods/test-simple-pm.info,v
retrieving revision 1.13
retrieving revision 1.14
diff -u -d -r1.13 -r1.14
--- test-simple-pm.info 25 Aug 2009 07:11:15 -  1.13
+++ test-simple-pm.info 31 Oct 2009 17:16:57 -  1.14
@@ -1,7 +1,7 @@
 Info2: 
 Package: test-simple-pm%type_pkg[perl]
 Version: 0.92
-Revision: 1
+Revision: 2
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
 Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5
 Description: Basic utilities for writing tests
@@ -17,7 +17,6 @@
 BuildDepends: 
perl%type_pkg[perl]-core,
file-spec-pm%type_pkg[perl],
-   test-pod-coverage-pm,
fink (= 0.28.0-1),
test-harness-pm%type_pkg[perl] (= 2.03-1)
 


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods test-simple-pm.info, 1.22, 1.23

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv26338

Modified Files:
test-simple-pm.info 
Log Message:
fix circular build dependency, thanks to Daniel Johnson

Index: test-simple-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/test-simple-pm.info,v
retrieving revision 1.22
retrieving revision 1.23
diff -u -d -r1.22 -r1.23
--- test-simple-pm.info 7 Sep 2009 13:53:35 -   1.22
+++ test-simple-pm.info 31 Oct 2009 17:17:26 -  1.23
@@ -1,7 +1,7 @@
 Info2: 
 Package: test-simple-pm%type_pkg[perl]
 Version: 0.94
-Revision: 1
+Revision: 2
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
 Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5
 Description: Basic utilities for writing tests
@@ -17,7 +17,6 @@
 BuildDepends: 
perl%type_pkg[perl]-core,
file-spec-pm%type_pkg[perl],
-   test-pod-coverage-pm,
fink (= 0.28.0-1),
test-harness-pm%type_pkg[perl] (= 2.03-1)
 


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods version-pm.info, 1.12, 1.13

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv21697

Modified Files:
version-pm.info 
Log Message:
new upstream

Index: version-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/version-pm.info,v
retrieving revision 1.12
retrieving revision 1.13
diff -u -d -r1.12 -r1.13
--- version-pm.info 23 Aug 2009 04:23:29 -  1.12
+++ version-pm.info 26 Oct 2009 02:30:45 -  1.13
@@ -1,6 +1,6 @@
 Info2: 
 Package: version-pm%type_pkg[perl]
-Version: 0.77
+Version: 0.78
 Revision: 1
 Epoch: 1
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
@@ -19,7 +19,7 @@
 
 # Unpack Phase.
 Source: mirror:cpan:authors/id/J/JP/JPEACOCK/version-%v.tar.gz
-Source-MD5: 6f9ff4cf7d15d31f343ccebccbb71c68
+Source-MD5: be60db0db0cd4707d8794d5a3d577d0f
 
 # Install Phase.
 InstallScript: 


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[cvs] dists/10.4/unstable/main/finkinfo/sci emboss.info,1.31,1.32

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv9110

Modified Files:
emboss.info 
Log Message:
now depends on java 1.5.0 so it works on 10.6 as well

Index: emboss.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/emboss.info,v
retrieving revision 1.31
retrieving revision 1.32
diff -u -d -r1.31 -r1.32
--- emboss.info 24 Aug 2009 05:17:06 -  1.31
+++ emboss.info 11 Oct 2009 21:40:09 -  1.32
@@ -1,9 +1,32 @@
 Package: emboss
 Version: 6.1.0
-Revision: 2
-Distribution: 10.4, 10.5
-Depends: %N-ajax6-shlibs (= %v-%r), %N-nucleus6-shlibs (= %v-%r), 
%N-plplot6-shlibs (= %v-%r), x11, x11-shlibs, libpng3-shlibs, libjpeg-shlibs, 
gd2-shlibs, system-java14, expat1-shlibs, fontconfig2-shlibs
-BuildDepends: libpng3, libjpeg, gd2, libiconv-dev, x11-dev, system-java14-dev, 
freetype219, expat1, fontconfig2-dev, fink (= 0.24.12)
+Revision: 3
+#Distribution: 10.4, 10.5
+Depends: 
+ %N-ajax6-shlibs (= %v-%r), 
+ %N-nucleus6-shlibs (= %v-%r), 
+ %N-plplot6-shlibs (= %v-%r), 
+ x11, 
+ x11-shlibs, 
+ libpng3-shlibs, 
+ libjpeg-shlibs, 
+ gd2-shlibs, 
+ system-java (= 1.5.0), 
+ expat1-shlibs, 
+ fontconfig2-shlibs
+
+BuildDepends: 
+ libpng3, 
+ libjpeg, 
+ gd2, 
+ libiconv-dev, 
+ x11-dev, 
+ system-java-dev (= 1.5.0), 
+ freetype219, 
+ expat1, 
+ fontconfig2-dev, 
+ fink (= 0.24.12)
+
 #Replaces: emboss ( 5.0.0)
 Source: mirror:custom:EMBOSS-%v.tar.gz
 CustomMirror: 
@@ -18,7 +41,12 @@
 PatchFile: %n.patch
 PatchFile-MD5: f185ca807918ee23755840d3bef46e49
 
-ConfigureParams: 
--with-java=/System/Library/Frameworks/JavaVM.framework/Versions/1.4.2/Home 
--with-javaos=/System/Library/Frameworks/JavaVM.framework/Versions/1.4.2/Home/include
 --disable-dependency-tracking --libdir=%p/lib/EMBOSS
+ConfigureParams: 
+ --with-java=/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home \
+ 
--with-javaos=/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/include
 \
+ --disable-dependency-tracking \
+ --libdir=%p/lib/EMBOSS
+
 
 CompileScript: 
  mv ../client.jar %b/jemboss/lib/


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[cvs] dists/10.4/unstable/main/finkinfo/sci tcoffee-10.4.info, 1.14, 1.15 tcoffee-10.5.info, 1.15, 1.16

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv21957

Modified Files:
tcoffee-10.4.info tcoffee-10.5.info 
Log Message:
new upstream

Index: tcoffee-10.4.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/tcoffee-10.4.info,v
retrieving revision 1.14
retrieving revision 1.15
diff -u -d -r1.14 -r1.15
--- tcoffee-10.4.info   4 Aug 2009 00:59:14 -   1.14
+++ tcoffee-10.4.info   10 Oct 2009 21:28:29 -  1.15
@@ -1,9 +1,9 @@
 Package: tcoffee
-Version: 8.06
+Version: 8.13
 Revision: 1
 Distribution: 10.4
 Source: http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_%v.tar.gz
-Source-MD5: ce4d7893dccc006cb45ed1f0aa15c30d
+Source-MD5: f2510efd8d69d197804656a360d5119f
 Sourcedirectory: T-COFFEE_distribution_Version_%v
 Depends: soap-lite-pm588
 BuildDepends: fink (= 0.24.12) 

Index: tcoffee-10.5.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/tcoffee-10.5.info,v
retrieving revision 1.15
retrieving revision 1.16
diff -u -d -r1.15 -r1.16
--- tcoffee-10.5.info   4 Aug 2009 00:59:14 -   1.15
+++ tcoffee-10.5.info   10 Oct 2009 21:28:29 -  1.16
@@ -1,9 +1,9 @@
 Package: tcoffee
-Version: 8.06
+Version: 8.13
 Revision: 101
 Distribution: 10.5
 Source: http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_%v.tar.gz
-Source-MD5: ce4d7893dccc006cb45ed1f0aa15c30d
+Source-MD5: f2510efd8d69d197804656a360d5119f
 Sourcedirectory: T-COFFEE_distribution_Version_%v
 Depends: soap-lite-pm588
 BuildDepends: fink (= 0.24.12) 


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[cvs] dists/10.4/unstable/main/finkinfo/sci eigen2.info,1.11,1.12

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv14423

Modified Files:
eigen2.info 
Log Message:
new upstream version

Index: eigen2.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/eigen2.info,v
retrieving revision 1.11
retrieving revision 1.12
diff -u -d -r1.11 -r1.12
--- eigen2.info 29 Aug 2009 19:42:29 -  1.11
+++ eigen2.info 8 Oct 2009 23:45:48 -   1.12
@@ -1,5 +1,5 @@
 Package: eigen2
-Version: 2.0.5
+Version: 2.0.6
 Revision: 1
 Maintainer: Koen van der Drift drift...@users.sourceforge.net
 BuildDepends: cmake (= 2.6.2)
@@ -7,7 +7,7 @@
 
 SourceDirectory: eigen2
 Source: http://bitbucket.org/eigen/eigen2/get/%v.bz2
-Source-MD5: 18a0e629931e84835a477c3d60152ee6
+Source-MD5: 0673563a5e7f74ae4ee130553458b81e
 SourceRename: %n-%v.tar.bz2
 CompileScript: 
  #!/bin/sh -ev


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods soap-lite-pm.info, 1.15, 1.16

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv14885

Modified Files:
soap-lite-pm.info 
Log Message:
new upstream

Index: soap-lite-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/soap-lite-pm.info,v
retrieving revision 1.15
retrieving revision 1.16
diff -u -d -r1.15 -r1.16
--- soap-lite-pm.info   23 Aug 2009 04:23:29 -  1.15
+++ soap-lite-pm.info   8 Oct 2009 23:48:29 -   1.16
@@ -1,7 +1,7 @@
 Info2: 
 
 Package: soap-lite-pm%type_pkg[perl]
-version: 0.710.08
+version: 0.710.10
 Revision: 1
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
 Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5
@@ -13,7 +13,7 @@
 
 ###
 Source: mirror:cpan:authors/id/M/MK/MKUTTER/SOAP-Lite-%v.tar.gz
-Source-MD5: e7869ad91fee76cc1782fe29fe3a989d
+Source-MD5: 45d6679daac03fe4eb604a5b5f416fd5
 ###
 PatchScript: 
   ### Fix user interaction


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods spreadsheet-parseexcel-pm.info, 1.14, 1.15

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv15585

Modified Files:
spreadsheet-parseexcel-pm.info 
Log Message:
new upstream version

Index: spreadsheet-parseexcel-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/spreadsheet-parseexcel-pm.info,v
retrieving revision 1.14
retrieving revision 1.15
diff -u -d -r1.14 -r1.15
--- spreadsheet-parseexcel-pm.info  30 Aug 2009 17:08:48 -  1.14
+++ spreadsheet-parseexcel-pm.info  8 Oct 2009 23:52:26 -   1.15
@@ -1,11 +1,11 @@
 Info2: 
 Package: spreadsheet-parseexcel-pm%type_pkg[perl]
-Version: 0.54
+Version: 0.55
 Revision: 1
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
 Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5
 Source: mirror:cpan:authors/id/J/JM/JMCNAMARA/Spreadsheet-ParseExcel-%v.tar.gz
-Source-MD5: 3f1685099efa415abe54ff305efdb00e
+Source-MD5: 6c88512797bfa7f4065992e5c6369956
 Type: perl (5.8.1 5.8.4 5.8.6 5.8.8)
 UpdatePOD: true
 PatchScript: perl -0 
-pe's/^.*=head\d\s+(COPYRIGHT.*?)(=head\d.*|=cut.*|)$/$1/is' 
lib/Spreadsheet/ParseExcel.pm  COPYRIGHT


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods bioperl-pm.patch, 1.4, 1.5 bioperl-pm.info, 1.14, 1.15

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv25889

Modified Files:
bioperl-pm.patch bioperl-pm.info 
Log Message:
new upstream

Index: bioperl-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/bioperl-pm.info,v
retrieving revision 1.14
retrieving revision 1.15
diff -u -d -r1.14 -r1.15
--- bioperl-pm.info 23 Aug 2009 04:23:27 -  1.14
+++ bioperl-pm.info 29 Sep 2009 22:27:44 -  1.15
@@ -1,10 +1,14 @@
 Info2: 
 Package: bioperl-pm%type_pkg[perl]
-Version: 1.6.0
+Version: 1.6.1
 Revision: 1
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
 Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5
-BuildDepends: perl%type_pkg[perl]-core, fink (= 0.24.12), 
module-build-pm%type_pkg[perl] (= 0.2808)
+BuildDepends: 
+ perl%type_pkg[perl]-core, 
+ fink (= 0.24.12), 
+ module-build-pm%type_pkg[perl] (= 0.2808)
+
 Depends: 
  array-compare-pm%type_pkg[perl],
  clone-pm%type_pkg[perl] (= 0.27),
@@ -18,7 +22,7 @@
  set-scalar-pm,
  soap-lite-pm%type_pkg[perl],
  spreadsheet-parseexcel-pm%type_pkg[perl],
- svg-pm,
+ svg-pm (= 2.26),
  test-harness-pm%type_pkg[perl] (= 2.62),
  text-shellwords-pm,
  uri-pm%type_pkg[perl],
@@ -32,7 +36,7 @@
 
 
 Source: http://www.bioperl.org/DIST/BioPerl-%v.tar.bz2
-Source-MD5: b5bc873aa990892651c3092d7e504397
+Source-MD5: d629dbdb3efca353f8f52108f41c09e0
 Enhances: dbd-mysql-pm%type_pkg[perl]
 Replaces: bioperl-pm%type_pkg[perl] (= 1.6)
 Conflicts: bioperl-pm%type_pkg[perl] (= 1.6)
@@ -41,7 +45,7 @@
 UpdatePOD: True
 NoPerlTests: True
 PatchFile: %{ni}.patch
-PatchFile-MD5: d61978c56419540097285e0df735773f
+PatchFile-MD5: bcae51236762287906a1248caa9c628a
 
 CompileScript: 
 #!/bin/sh -ex
@@ -70,7 +74,7 @@
  mv %i/bin/*.pl %i/share/%n/scripts/
 
 
-DocFiles: Changes INSTALL README LICENSE PLATFORMS BUGS AUTHORS DEPENDENCIES
+DocFiles: AUTHORS Changes DEPENDENCIES INSTALL LICENSE README  
 Description: Perl module for molecular biology
 DescDetail: 
  Bioperl is a package of public domain Perl tools for computational 
@@ -80,7 +84,9 @@
 
 DescPackaging: 
 Tests are disabled, because they need network access
+
 Switched to use Module::Build in version 1.5.2-4
+
 Previous maintainer: Christopher Dithi di...@dithi.com 
 
 DescUsage: 

Index: bioperl-pm.patch
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/bioperl-pm.patch,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -d -r1.4 -r1.5
--- bioperl-pm.patch1 Feb 2009 18:46:41 -   1.4
+++ bioperl-pm.patch29 Sep 2009 22:27:44 -  1.5
@@ -1,81 +1,98 @@
-diff -Naur BioPerl-1.6.0/Bio/Root/Build.pm 
BioPerl-1.6.0-patched/Bio/Root/Build.pm
 BioPerl-1.6.0/Bio/Root/Build.pm2009-01-25 00:19:26.0 -0500
-+++ BioPerl-1.6.0-patched/Bio/Root/Build.pm2009-02-01 10:08:09.0 
-0500
-@@ -141,9 +141,11 @@
+diff -Naur BioPerl-1.6.1/Bio/Root/Build.pm 
BioPerl-1.6.1-patched/Bio/Root/Build.pm
+--- BioPerl-1.6.1/Bio/Root/Build.pm2009-09-29 12:33:53.0 -0400
 BioPerl-1.6.1-patched/Bio/Root/Build.pm2009-09-29 17:32:00.0 
-0400
+@@ -124,10 +124,12 @@
  }
  }
  closedir($scripts_dir);
--my $question = $int_ok ? Install [a]ll Bioperl scripts, [n]one, or 
choose groups [i]nteractively? : Install [a]ll Bioperl scripts or [n]one?;
-+#my $question = $int_ok ? Install [a]ll Bioperl scripts, [n]one, or 
choose groups [i]nteractively? : Install [a]ll Bioperl scripts or [n]one?;
- 
+-my $question = $int_ok ? Install [a]ll BioPerl scripts, [n]one, or 
choose groups [i]nteractively? : Install [a]ll BioPerl scripts or [n]one?;
+-
 -my $prompt = $accept ? 'a' : $self-prompt($question, 'a');
-+#my $prompt = $accept ? 'a' : $self-prompt($question, 'a');
-+
-+my $prompt = 'a';
  
++#my $question = $int_ok ? Install [a]ll BioPerl scripts, [n]one, or 
choose groups [i]nteractively? : Install [a]ll BioPerl scripts or [n]one?;
++#my $prompt = $accept ? 'a' : $self-prompt($question, 'a');
++
++  my $prompt = 'a';
++  
  if ($prompt =~ /^[aA]/) {
  $self-log_info(  - will install all scripts\n);
-diff -Naur BioPerl-1.6.0/Build.PL BioPerl-1.6.0-patched/Build.PL
 BioPerl-1.6.0/Build.PL 2009-01-25 00:19:13.0 -0500
-+++ BioPerl-1.6.0-patched/Build.PL 2009-02-01 09:59:55.0 -0500
-@@ -29,43 +29,43 @@
+ $self-notes(chosen_scripts = 'all');
+@@ -475,8 +477,9 @@
+ my ($self, $desired, $version, $msg) = @_;
+ 
+ unless (defined $self-{ask_optional}) {
+-$self-{ask_optional} = $self-args-{accept}
+-  ? 'n' : $self-prompt(Install [a]ll optional 

[cvs] dists/10.4/unstable/main/finkinfo/libs/rubymods bioruby-rb.info, 1.8, 1.9

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/rubymods
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv17867

Modified Files:
bioruby-rb.info 
Log Message:
new upstream version

Index: bioruby-rb.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/rubymods/bioruby-rb.info,v
retrieving revision 1.8
retrieving revision 1.9
diff -u -d -r1.8 -r1.9
--- bioruby-rb.info 8 Mar 2009 12:09:21 -   1.8
+++ bioruby-rb.info 8 Sep 2009 23:47:41 -   1.9
@@ -1,6 +1,6 @@
 Info2: 
 Package: bioruby-rb%type_pkg[ruby]
-Version: 1.3.0
+Version: 1.3.1
 Revision: 1
 Type: ruby (1.8)
 Description: Open source bioinformatics library for Ruby
@@ -13,7 +13,7 @@
 
 # Unpack Phase:
 Source: http://bioruby.org/archive/bioruby-%v.tar.gz
-Source-MD5: a69f225c9f20851e1b9d2c4a82d026d1
+Source-MD5: 527e9e73258a7e1901928e2b06487ea4
 
 # Compile Phase:
 CompileScript: 


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods test-simple-pm.info, 1.21, 1.22

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv25828

Modified Files:
test-simple-pm.info 
Log Message:
new upstream version

Index: test-simple-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/test-simple-pm.info,v
retrieving revision 1.21
retrieving revision 1.22
diff -u -d -r1.21 -r1.22
--- test-simple-pm.info 25 Aug 2009 07:09:09 -  1.21
+++ test-simple-pm.info 7 Sep 2009 13:53:35 -   1.22
@@ -1,6 +1,6 @@
 Info2: 
 Package: test-simple-pm%type_pkg[perl]
-Version: 0.92
+Version: 0.94
 Revision: 1
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
 Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5
@@ -24,7 +24,7 @@
 Provides: test-simple-pm
 Replaces: test-simple-pm (= 0.47-14)
 Source: mirror:cpan:authors/id/M/MS/MSCHWERN/Test-Simple-%v.tar.gz
-Source-MD5: eaafa92c9a21c4290dd9d0752bb744b0
+Source-MD5: e4e09d8bf2cc73124152ba2c45c95b5b
 
 UpdatePOD: true
 InstallScript: 


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods spreadsheet-parseexcel-pm.info, 1.13, 1.14

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv6570

Modified Files:
spreadsheet-parseexcel-pm.info 
Log Message:
new upstream

Index: spreadsheet-parseexcel-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/spreadsheet-parseexcel-pm.info,v
retrieving revision 1.13
retrieving revision 1.14
diff -u -d -r1.13 -r1.14
--- spreadsheet-parseexcel-pm.info  23 Aug 2009 04:23:29 -  1.13
+++ spreadsheet-parseexcel-pm.info  30 Aug 2009 17:08:48 -  1.14
@@ -1,11 +1,11 @@
 Info2: 
 Package: spreadsheet-parseexcel-pm%type_pkg[perl]
-Version: 0.49
+Version: 0.54
 Revision: 1
 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
 Distribution: (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.4, 
(%type_pkg[perl] = 586) 10.4, (%type_pkg[perl] = 586) 10.5
 Source: mirror:cpan:authors/id/J/JM/JMCNAMARA/Spreadsheet-ParseExcel-%v.tar.gz
-Source-MD5: abc0f400d58b61f46c30a2f46db0ea46
+Source-MD5: 3f1685099efa415abe54ff305efdb00e
 Type: perl (5.8.1 5.8.4 5.8.6 5.8.8)
 UpdatePOD: true
 PatchScript: perl -0 
-pe's/^.*=head\d\s+(COPYRIGHT.*?)(=head\d.*|=cut.*|)$/$1/is' 
lib/Spreadsheet/ParseExcel.pm  COPYRIGHT
@@ -20,9 +20,9 @@
 
 DocFiles: Changes MANIFEST META.yml README README_Japan.htm COPYRIGHT
 License: Artistic/GPL
-Description: Get information from Excel file
+Description: Get information from an Excel file
 DescDetail: 
- This module allows you to get information from Excel file.
+ This module allows you to get information from an Excel file.
 
  This module can handle files of Excel95, 97 and 2000.
  (and now supports Excel4)


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods xml-semanticdiff-pm.info, 1.5, 1.6

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv7676

Modified Files:
xml-semanticdiff-pm.info 
Log Message:
new upstream

Index: xml-semanticdiff-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/xml-semanticdiff-pm.info,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -d -r1.5 -r1.6
--- xml-semanticdiff-pm.info12 Oct 2008 23:03:11 -  1.5
+++ xml-semanticdiff-pm.info30 Aug 2009 17:22:30 -  1.6
@@ -1,10 +1,10 @@
 Package: xml-semanticdiff-pm
-Version: 0.99
+Version: 1.
 Revision: 1
 Source: mirror:cpan:authors/id/S/SH/SHLOMIF/XML-SemanticDiff-%v.tar.gz
 Type: perl
 UpdatePOD: True
-Source-MD5: b49a9d441bec5deb102cfb4e4c5bcde2
+Source-MD5: 013a0f5d4e5347deda12e1e90e3ab9e7
 DocFiles: Changes MANIFEST README
 Description: Perl extension for comparing XML documents
 DescDetail: 


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[cvs] dists/10.4/unstable/main/finkinfo/sci eigen2.info,1.10,1.11

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv9534

Modified Files:
eigen2.info 
Log Message:
new upstream version

Index: eigen2.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/eigen2.info,v
retrieving revision 1.10
retrieving revision 1.11
diff -u -d -r1.10 -r1.11
--- eigen2.info 15 Aug 2009 02:00:56 -  1.10
+++ eigen2.info 29 Aug 2009 19:42:29 -  1.11
@@ -1,5 +1,5 @@
 Package: eigen2
-Version: 2.0.4
+Version: 2.0.5
 Revision: 1
 Maintainer: Koen van der Drift drift...@users.sourceforge.net
 BuildDepends: cmake (= 2.6.2)
@@ -7,7 +7,7 @@
 
 SourceDirectory: eigen2
 Source: http://bitbucket.org/eigen/eigen2/get/%v.bz2
-Source-MD5: 6f26ed59b8cc2b6a41130d86563253c8
+Source-MD5: 18a0e629931e84835a477c3d60152ee6
 SourceRename: %n-%v.tar.bz2
 CompileScript: 
  #!/bin/sh -ev


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[cvs] dists/10.4/unstable/main/finkinfo/libs/perlmods module-build-pm-10.4.info, 1.10, 1.11 module-build-pm-10.5.info, 1.12, 1.13 module-build-pm-10.6.info, 1.7, 1.8 module-build-pm.info, 1.20, 1.21

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv12919

Modified Files:
module-build-pm-10.4.info module-build-pm-10.5.info 
module-build-pm-10.6.info module-build-pm.info 
Log Message:
new upstream

Index: module-build-pm.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/module-build-pm.info,v
retrieving revision 1.20
retrieving revision 1.21
diff -u -d -r1.20 -r1.21
--- module-build-pm.info23 Aug 2009 04:23:29 -  1.20
+++ module-build-pm.info28 Aug 2009 02:16:23 -  1.21
@@ -1,6 +1,6 @@
 Info2: 
 Package: module-build-pm%type_pkg[perl]
-Version: 0.34
+Version: 0.35
 Revision: 1
 Epoch: 1
 Architecture: (%type_pkg[perl] = 581) powerpc
@@ -29,7 +29,7 @@
 
 # Unpack Phase.
 Source: mirror:cpan:authors/id/D/DA/DAGOLDEN/Module-Build-%v.tar.gz
-Source-MD5: 3046618f824e56c9ede6bce3bcaf1dc4
+Source-MD5: d1ba4831d9c5feca34e49c529158e8db
 
 # Compile Phase.
 CompileScript: 

Index: module-build-pm-10.4.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/module-build-pm-10.4.info,v
retrieving revision 1.10
retrieving revision 1.11
diff -u -d -r1.10 -r1.11
--- module-build-pm-10.4.info   12 Jul 2009 18:32:02 -  1.10
+++ module-build-pm-10.4.info   28 Aug 2009 02:16:23 -  1.11
@@ -1,5 +1,5 @@
 Package: module-build-pm
-Version: 0.34
+Version: 0.35
 Revision: 101
 Epoch: 1
 Distribution: 10.4

Index: module-build-pm-10.6.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/module-build-pm-10.6.info,v
retrieving revision 1.7
retrieving revision 1.8
diff -u -d -r1.7 -r1.8
--- module-build-pm-10.6.info   12 Jul 2009 18:32:02 -  1.7
+++ module-build-pm-10.6.info   28 Aug 2009 02:16:23 -  1.8
@@ -1,5 +1,5 @@
 Package: module-build-pm
-Version: 0.34
+Version: 0.35
 Revision: 301
 Epoch: 1
 Distribution: 10.6

Index: module-build-pm-10.5.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/module-build-pm-10.5.info,v
retrieving revision 1.12
retrieving revision 1.13
diff -u -d -r1.12 -r1.13
--- module-build-pm-10.5.info   12 Jul 2009 18:32:02 -  1.12
+++ module-build-pm-10.5.info   28 Aug 2009 02:16:23 -  1.13
@@ -1,5 +1,5 @@
 Package: module-build-pm
-Version: 0.34
+Version: 0.35
 Revision: 201
 Epoch: 1
 Distribution: 10.5


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[cvs] dists/10.4/unstable/main/finkinfo/libs/pythonmods biopython-py.info, 1.11, 1.12

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/pythonmods
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv21773

Modified Files:
biopython-py.info 
Log Message:
remove -23 line

Index: biopython-py.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/pythonmods/biopython-py.info,v
retrieving revision 1.11
retrieving revision 1.12
diff -u -d -r1.11 -r1.12
--- biopython-py.info   23 Aug 2009 04:25:36 -  1.11
+++ biopython-py.info   23 Aug 2009 13:36:57 -  1.12
@@ -2,7 +2,6 @@
 Package: biopython-py%type_pkg[python]
 Version: 1.51
 Revision: 1
-#Distribution: (%type_pkg[python] = 23) 10.4
 Distribution: (%type_pkg[python] = 24) 10.4, (%type_pkg[python] = 24) 10.5
 Type: python (2.4 2.5 2.6)
 Depends: python%type_pkg[python], scipy-core-py%type_pkg[python], 
reportlab-py%type_pkg[python] (= 1.20-1011), clustalw, wise2


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[cvs] dists/10.4/unstable/main/finkinfo/sci iolib.info,1.9,1.10

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv13502

Modified Files:
iolib.info 
Log Message:
new upstream

Index: iolib.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/iolib.info,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -d -r1.9 -r1.10
--- iolib.info  4 Aug 2009 02:23:21 -   1.9
+++ iolib.info  22 Aug 2009 02:02:46 -  1.10
@@ -1,10 +1,10 @@
 Package: iolib
-Version: 1.12.0
+Version: 1.12.1
 Revision: 1
 Maintainer: Koen van der Drift drift...@users.sourceforge.net
 
 Source: mirror:sourceforge:staden/io_lib-%v.tar.gz
-Source-MD5: 21efaf4a29c508066f7320285316774b
+Source-MD5: f511698b766d5bd7d15a8269bdcddf84
 SourceDirectory:io_lib-%v
 Depends: %N-shlibs (= %v-%r)
 


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[cvs] dists/10.4/unstable/main/finkinfo/libs/pythonmods biopython-py.info, 1.9, 1.10

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/pythonmods
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv31439

Modified Files:
biopython-py.info 
Log Message:
new upstream, dropping 2.3 support

Index: biopython-py.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/pythonmods/biopython-py.info,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -d -r1.9 -r1.10
--- biopython-py.info   25 Apr 2009 05:07:46 -  1.9
+++ biopython-py.info   19 Aug 2009 22:10:22 -  1.10
@@ -1,16 +1,18 @@
 Info2: 
 Package: biopython-py%type_pkg[python]
-Version: 1.50
+Version: 1.51
 Revision: 1
-Distribution: (%type_pkg[python] = 23) 10.4
-Type: python (2.3 2.4 2.5 2.6)
+#Distribution: (%type_pkg[python] = 23) 10.4
+Type: python (2.4 2.5 2.6)
 Depends: python%type_pkg[python], scipy-core-py%type_pkg[python], 
reportlab-py%type_pkg[python] (= 1.20-1011), clustalw, wise2
 BuildDepends: flex
 Replaces: python-biopython-py%type_pkg[python]
 Source: http://biopython.org/DIST/biopython-%v.tar.gz
-Source-MD5: 3b29187846baa223c7c1a4e9a058e6b9
+Source-MD5: e973cb96b44b47526d31b6a0039c686f
+
 #Patch: %{ni}.patch
 CompileScript: %p/bin/python%type_raw[python] setup.py build
+
 InstallScript:  
   %p/bin/python%type_raw[python] setup.py install --root=%d
 #  mkdir -p %i/share/doc/%n/doc
@@ -19,19 +21,20 @@
   cp -R Tests Doc %i/share/%n/
 
 DocFiles: NEWS README CONTRIB LICENSE
+
 Description: Python tools for computational biology
 DescDetail: 
-The Biopython Project is an international association of developers 
-of freely available Python tools for computational molecular biology. 
-The web site http://biopython.org provides an online resource for modules, 
-scripts, and web links for developers of Python-based software for 
-life science research.
+ The Biopython Project is an international association of developers 
+ of freely available Python tools for computational molecular biology. 
+ The web site http://biopython.org provides an online resource for modules, 
+ scripts, and web links for developers of Python-based software for 
+ life science research.
 
 DescPackaging: 
-The package name used to be python-biopython-py, but was
-renamed to be more confirm with other python packages.
+ The package name used to be python-biopython-py, but was
+ renamed to be more confirm with other python packages.
 
-Previous Maintainer: Gavin Crooks g...@compbio.berkeley.edu
+ Previous Maintainer: Gavin Crooks g...@compbio.berkeley.edu
 
 License: OSI-Approved
 Maintainer: Koen van der Drift drift...@users.sourceforge.net


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[cvs] dists/10.4/unstable/main/finkinfo/sci emboss.info, 1.29, 1.30 emboss.patch, 1.14, 1.15

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv9696

Modified Files:
emboss.info emboss.patch 
Log Message:
upstream patches

Index: emboss.patch
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/emboss.patch,v
retrieving revision 1.14
retrieving revision 1.15
diff -u -d -r1.14 -r1.15
--- emboss.patch20 Apr 2009 01:48:05 -  1.14
+++ emboss.patch15 Aug 2009 20:08:45 -  1.15
@@ -1,758 +1,1102 @@
-diff -Naur EMBOSS-6.0.1/ajax/ajacd.c EMBOSS-6.0.1-patched/ajax/ajacd.c
 EMBOSS-6.0.1/ajax/ajacd.c  2008-07-14 10:47:38.0 -0400
-+++ EMBOSS-6.0.1-patched/ajax/ajacd.c  2009-04-07 06:44:12.0 -0400
-@@ -8256,8 +8256,16 @@
-   acdReplyInit(thys, ajStrGetPtr(gdev), acdReplyDef);
-   else
- #ifndef WIN32
-+#ifndef X_DISPLAY_MISSING /* X11 is available */
-   acdReplyInit(thys, x11, acdReplyDef);
- #else
-+#ifdef PLD_png  /* if png/gd/zlib libraries available for png driver 
*/
[...1739 lines suppressed...]
+-fi
  
- /* Get maximum path score and save position */
--pathmax = -(float) INT_MAX;
-+pathmax = -(double) INT_MAX;
- for(row=0;rowproflen;++row)
-   for(column=0;columnseqlen;++column)
-   if(path[row*seqlen+column]  pathmax)
-diff -Naur EMBOSS-6.0.1/nucleus/embprop.c 
EMBOSS-6.0.1-patched/nucleus/embprop.c
 EMBOSS-6.0.1/nucleus/embprop.c 2008-07-14 18:13:33.0 -0400
-+++ EMBOSS-6.0.1-patched/nucleus/embprop.c 2008-08-27 03:32:32.0 
-0400
-@@ -880,6 +880,7 @@
  
- if(allpartials)
- {
-+lim = defcnt;
-   for(i=0;ilim;++i)
-   for(j=i+1;jlim;++j)
-   {
+ #

Index: emboss.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/emboss.info,v
retrieving revision 1.29
retrieving revision 1.30
diff -u -d -r1.29 -r1.30
--- emboss.info 15 Jul 2009 23:30:48 -  1.29
+++ emboss.info 15 Aug 2009 20:08:44 -  1.30
@@ -1,6 +1,6 @@
 Package: emboss
 Version: 6.1.0
-Revision: 1
+Revision: 2
 #Distribution: 10.4
 Depends: %N-ajax6-shlibs (= %v-%r), %N-nucleus6-shlibs (= %v-%r), 
%N-plplot6-shlibs (= %v-%r), x11, x11-shlibs, libpng3-shlibs, libjpeg-shlibs, 
gd2-shlibs, system-java14, expat1-shlibs, fontconfig2-shlibs
 BuildDepends: libpng3, libjpeg, gd2, libiconv-dev, x11-dev, system-java14-dev, 
freetype219, expat1, fontconfig2-dev, fink (= 0.24.12)
@@ -10,12 +10,22 @@
   Primary: ftp://emboss.open-bio.org/pub/EMBOSS/
 
 Source-MD5: 6c5163c571bc0be94d64420ce0d71824
+Source2: ftp://emboss.open-bio.org/pub/EMBOSS/fixes/client.jar
+Source2-MD5: 01b8ae4b36ee465206f8911e13677a87
+
 #SetCPPFLAGS: -Dstat64=stat
 
-#PatchFile: %n.patch
-#PatchFile-MD5: a0c6f408a906b0694452bd473bafb367
+PatchFile: %n.patch
+PatchFile-MD5: f185ca807918ee23755840d3bef46e49
 
 ConfigureParams: 
--with-java=/System/Library/Frameworks/JavaVM.framework/Versions/1.4.2/Home 
--with-javaos=/System/Library/Frameworks/JavaVM.framework/Versions/1.4.2/Home/include
 --disable-dependency-tracking --libdir=%p/lib/EMBOSS
+
+CompileScript: 
+ mv ../client.jar %b/jemboss/lib/
+ ./configure %c
+ make
+
+
 Installscript: 
   make install DESTDIR=%d
   mkdir -p %i/include/EMBOSS


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[cvs] dists/10.4/unstable/main/finkinfo/sci eigen2.info,1.9,1.10

[Koen van der Drift]

Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv8099

Modified Files:
eigen2.info 
Log Message:
new upstream

Index: eigen2.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/eigen2.info,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -d -r1.9 -r1.10
--- eigen2.info 28 Jun 2009 13:40:39 -  1.9
+++ eigen2.info 15 Aug 2009 02:00:56 -  1.10
@@ -1,5 +1,5 @@
 Package: eigen2
-Version: 2.0.3
+Version: 2.0.4
 Revision: 1
 Maintainer: Koen van der Drift drift...@users.sourceforge.net
 BuildDepends: cmake (= 2.6.2)
@@ -7,7 +7,7 @@
 
 SourceDirectory: eigen2
 Source: http://bitbucket.org/eigen/eigen2/get/%v.bz2
-Source-MD5: 993a929f4326e19eaaf91b7106cbd8a9
+Source-MD5: 6f26ed59b8cc2b6a41130d86563253c8
 SourceRename: %n-%v.tar.bz2
 CompileScript: 
  #!/bin/sh -ev


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