Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci
In directory vz-cvs-3.sog:/tmp/cvs-serv29802
Added Files:
phaser-mpi.info
Log Message:
standalone version of phaser capable of using mp
--- NEW FILE: phaser-mpi.info ---
Package: phaser-mpi
Version: 2.5.1
Revision: 1
Distribution: 10.6, 10.7, 10.8
Source: ftp://ftp.ccp4.ac.uk/ccp4/6.3.0/ccp4-6.3.0-phaser-cctbx-src.tar.gz
Source-MD5: 018765c258b70726b281de506e9139c4
SourceDirectory: ccp4-6.3.0
NoSetCPPFLAGS: true
NoSetLDFLAGS: true
Depends: gcc47-shlibs
BuildDepends: gcc47-compiler
BuildDependsOnly: false
PatchScript: perl -pi.orig -e "s|cxx \= cc.replace\('gcc', 'g\+\+'\)|cxx \=
cc.replace\('gcc', '%p/bin/g\+\+-4'\)|g"
lib/cctbx/cctbx_sources/cctbx_project/libtbx/SConscript
CompileScript: <<
#!/bin/bash -efv
CCP4=""
export CXXFLAGS="-L%p/lib/gcc4.7/lib"
export CFLAGS="-I%p/lib/gcc4.7/include"
export CPPFLAGS="$CFLAGS"
NUMPROC="$(sysctl -n hw.ncpu)"
cd src/phaser
mv bin bin.orig
/usr/bin/python \
../../lib/cctbx/cctbx_sources/cctbx_project/libtbx/configure.py
--repository=source phaser --build-boost-python-extensions=False
--enable-openmp-if-possible=True --static-exe --use-environment-flags
--compiler=gcc
source setpaths.sh
libtbx.scons -j $NUMPROC .
<<
InstallScript: <<
#!/bin/bash -efv
mkdir -p %i/bin
cd src/phaser
install_name_tool -change /usr/lib/libstdc++.6.dylib
%p/lib/gcc4.7/lib/libstdc++.6.dylib exe/phaser
cp exe/phaser %i/bin/phaser_omp
<<
Description: CCP4 automated molecular replacement program
DescDetail: <<
Stand-alone version of the cctbx/ccp4 affiliated automatic
molecular replacement program, built with OpenMP enabled. To use
with multiple processors, invoke with "phaser_omp"
and use the keyword "JOBS N", where N is the number of processors
to be used (up to the vaule returned with the command "sysctl -n hw.ncpu".
If you use this software please cite:
"Phaser Crystallographic Software" A.J. McCoy, R.W. Grosse-Kunstleve,
P.D. Adams, M.D. Winn, L.C. Storoni & R.J. Read
J. Appl. Cryst. (2007). 40, 658-674
<<
License: Restrictive
Homepage: http://www.phaser.cimr.cam.ac.uk
Maintainer: W. G. Scott <wgsc...@users.sourceforge.net>
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