Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv19860
Modified Files:
rdkit.info
Log Message:
revert to previous revision
Index: rdkit.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci/rdkit.info,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- rdkit.info 6 Sep 2013 05:40:39 -0000 1.3
+++ rdkit.info 7 Sep 2013 04:01:51 -0000 1.4
@@ -1,11 +1,13 @@
Package: rdkit
Version: 2013.06.1
-Revision: 2
+Revision: 3
Distribution: 10.6, 10.7, 10.8
GCC: 4.0
BuildDependsOnly: false
Source: mirror:sourceforge:rdkit/RDKit_2013_06_1.tgz
Source-MD5: 13b9ea2c4c03e04dcea055c79b3173a9
+Source2: mirror:sourceforge:boost/boost_1_53_0.tar.bz2
+Source2-MD5: a00d22605d5dbcfb4c9936a9b35bc4c2
Description: Cheminformatics and machine-learning software
DescDetail: <<
A collection of cheminformatics and machine-learning software written in C++
@@ -15,70 +17,98 @@
to be stored in a relational database and retrieved via substructure and
similarity searches.
<<
-BuildConflicts: boost1.35.nopython, boost1.35.python26, boost1.35.python27,
boost1.35.systempython, boost1.46.cmake, boost-jam, boost1.46.1.cmake,
boost1.52.0.cmake
-Depends: %N-shlibs (= %v-%r), python27-shlibs, numpy-py27, sqlite3-shlibs,
pil-py27, boost1.53.python27-shlibs
-BuildDepends: python27, numpy-py27, sqlite3-dev, cmake, boost1.53.python27
+BuildConflicts: boost1.35.nopython, boost1.35.python26, boost1.35.python27,
boost1.35.systempython, boost1.46.cmake, boost-jam, boost1.46.1.cmake
+Depends: %N-shlibs, python27-shlibs, numpy-py27, sqlite3-shlibs
+BuildDepends: python27, numpy-py27, sqlite3-dev, cmake
CompileScript: <<
#!/bin/sh -efv
+#
+# First build a more current boost libboost_python library and we will put it
in the rdkit
+# library subdirectory to avoid confusion
+#
+RDKIT_ROOT="$PWD"
+cd ../boost_1_53_0
+BOOSTROOT="$PWD"
+./bootstrap.sh --with-libraries="python,regex" --with-python-root=%p
--with-python=%p/bin/python2.7 --prefix="$PWD"
+#
+./b2 install --prefix="$BOOSTROOT"
+cd lib
+# Despite the above it links to the system python, so fix that and give it a
proper instal name id
+install_name_tool -change
/System/Library/Frameworks/Python.framework/Versions/2.7/Python
%p/lib/python2.7/config/libpython2.7.dylib libboost_python.dylib
+install_name_tool -id %p/lib/rdkit/libboost_python.dylib
libboost_python.dylib
+#
+#
+install_name_tool -change
/System/Library/Frameworks/Python.framework/Versions/2.7/Python
%p/lib/python2.7/config/libpython2.7.dylib libboost_regex.dylib
+install_name_tool -id %p/lib/rdkit/libboost_regex.dylib libboost_regex.dylib
+#
+#
+# Now for rdkit itself
+#
+cd "$RDKIT_ROOT"
mkdir build
cd build
-cmake -DFLEX_EXECUTABLE:FILEPATH=/usr/bin/flex -DCMAKE_OSX_SYSROOT:PATH="/"
-DCMAKE_OSX_DEPLOYMENT_TARGET:STRING="" -DCMAKE_INSTALL_PREFIX=%p
-DCMAKE_INSTALL_NAME_DIR=%p/lib/%n -DCMAKE_PREFIX_PATH=%p
-DBOOST_LIBRARYDIR="%p/lib/python2.7/site-packages"
-DBOOST_ROOT="%p/lib/boost-1_53" -DBoost_NO_SYSTEM_PATHS=ON
-DPYTHON_LIBRARY=%p/lib/python2.7/config/libpython2.7.dylib
-DPYTHON_INCLUDE_DIR=%p/include/python2.7 -DPYTHON_EXECUTABLE=%p/bin/python2.7
..
-make install
+cmake -DCMAKE_INSTALL_PREFIX=%p -DCMAKE_INSTALL_NAME_DIR=%p/lib/%n
-DCMAKE_PREFIX_PATH=%p -DBOOST_ROOT="$BOOSTROOT" -DBoost_NO_SYSTEM_PATHS=ON
-DPYTHON_LIBRARY=%p/lib/python2.7/config/libpython2.7.dylib
-DPYTHON_INCLUDE_DIR=%p/include/python2.7 -DPYTHON_EXECUTABLE=%p/bin/python2.7
..
+# NUMPROC="$(sysctl -n hw.ncpu)"
+# make -j $NUMPROC install
+ make install
+#
+# We only require the boost_python library and boost_regex library
+cp "$BOOSTROOT"/lib/libboost_python.dylib
"$RDKIT_ROOT"/lib/libboost_python.dylib
+cp "$BOOSTROOT"/lib/libboost_regex.dylib
"$RDKIT_ROOT"/lib/libboost_regex.dylib
+cp -R "$BOOSTROOT"/boost "$RDKIT_ROOT"/Code/.
<<
InstallScript: <<
#!/bin/sh -efv
mkdir -p %i/lib/python2.7/site-packages
-perl -pi -e 's|import Image|from PIL import Image|g' rdkit/sping/PIL/pidPIL.py
cp -R rdkit %i/lib/python2.7/site-packages/.
mkdir -p %i/lib
cp -R lib %i/lib/%n
mkdir -p %i/include
cp -R Code %i/include/%n
-cp -R Contrib/PBF %i/include/%n/.
-cp -R External/AvalonTools %i/include/%n/.
-cp -R External/INCHI-API %i/include/%n/.
-cp -R External/cmim-1.0 %i/include/%n/.
<<
SplitOff: <<
Package: %N-shlibs
Description: rdkit dynamic libraries
Files:<<
- lib/%N/*.%v.dylib
- lib/%N/*.1.dylib
+ lib/%N/*.1.dylib
+ lib/%N/libboost_python.dylib
+ lib/%N/libboost_regex.dylib
<<
Shlibs: <<
- %p/lib/%N/libAlignment.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libCatalogs.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libChemReactions.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libChemTransforms.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libChemicalFeatures.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libDataStructs.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libDepictor.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libDescriptors.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libDistGeomHelpers.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libDistGeometry.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libEigenSolvers.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libFileParsers.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libFingerprints.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libForceField.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libForceFieldHelpers.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libFragCatalog.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libGraphMol.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libMolAlign.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libMolCatalog.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libMolChemicalFeatures.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libMolTransforms.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libOptimizer.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libPartialCharges.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libRDBoost.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libRDGeneral.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libRDGeometryLib.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libShapeHelpers.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libSimDivPickers.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libSmilesParse.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libSubgraphs.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libSubstructMatch.1.dylib 1.0.0 %n (>=
2013.06.1-1)
- %p/lib/%N/libhc.1.dylib 1.0.0 %n (>=
2013.06.1-1)
+ %p/lib/%N/libboost_python.dylib 0.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libboost_regex.dylib 0.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libAlignment.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libCatalogs.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libChemReactions.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libChemTransforms.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libChemicalFeatures.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libDataStructs.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libDepictor.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libDescriptors.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libDistGeomHelpers.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libDistGeometry.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libEigenSolvers.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libFileParsers.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libFingerprints.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libForceField.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libForceFieldHelpers.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libFragCatalog.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libGraphMol.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libMolAlign.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libMolCatalog.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libMolChemicalFeatures.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libMolTransforms.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libOptimizer.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libPartialCharges.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libRDBoost.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libRDGeneral.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libRDGeometryLib.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libShapeHelpers.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libSimDivPickers.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libSmilesParse.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libSubgraphs.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libSubstructMatch.1.dylib 1.0.0 %n (>=
2012.12.1-1)
+ %p/lib/%N/libhc.1.dylib 1.0.0 %n (>=
2012.12.1-1)
<<
DocFiles: license.txt README
License: BSD
------------------------------------------------------------------------------
Learn the latest--Visual Studio 2012, SharePoint 2013, SQL 2012, more!
Discover the easy way to master current and previous Microsoft technologies
and advance your career. Get an incredible 1,500+ hours of step-by-step
tutorial videos with LearnDevNow. Subscribe today and save!
http://pubads.g.doubleclick.net/gampad/clk?id=58041391&iu=/4140/ostg.clktrk
_______________________________________________
Fink-commits mailing list
Fink-commits@lists.sourceforge.net
http://news.gmane.org/gmane.os.apple.fink.cvs
