Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/pythonmods
In directory sc8-pr-cvs17.sourceforge.net:/tmp/cvs-serv5274
Added Files:
biopython-py.info biopython-py.patch
Log Message:
moved from /sci
--- NEW FILE: biopython-py.info ---
Info2: <<
Package: biopython-py%type_pkg[python]
Version: 1.44
Revision: 3
Distribution: (%type_pkg[python] = 23) 10.3, (%type_pkg[python] = 23) 10.4
Type: python (2.3 2.4 2.5)
Depends: python%type_pkg[python], python-mx-py%type_pkg[python],
numeric-py%type_pkg[python], reportlab-py%type_pkg[python] (>= 1.20-1011),
clustalw, wise2
BuildDepends: flex
Replaces: python-biopython-py%type_pkg[python]
Source: http://biopython.org/DIST/biopython-%v.tar.gz
Source-MD5: 762c7a358af9dc58b712b8b4bb99d0c2
Patch: %{ni}.patch
CompileScript: %p/bin/python%type_raw[python] setup.py build
InstallScript: <<
%p/bin/python%type_raw[python] setup.py install --root=%d
# mkdir -p %i/share/doc/%n/doc
# cp -R doc %i/share/doc/%n/doc
mkdir -p %i/share/%n
cp -R Tests Doc %i/share/%n/
<<
DocFiles: NEWS README CONTRIB LICENSE
Description: Python tools for computational biology
DescDetail: <<
The Biopython Project is an international association of developers
of freely available Python tools for computational molecular biology.
The web site http://biopython.org provides an online resource for modules,
scripts, and web links for developers of Python-based software for
life science research.
<<
DescPackaging: <<
The package name used to be python-biopython-py, but was
renamed to be more confirm with other python packages.
Previous Maintainer: Gavin Crooks <[EMAIL PROTECTED]>
<<
License: OSI-Approved
Maintainer: Koen van der Drift <[EMAIL PROTECTED]>
Homepage: http://biopython.org/
<<
--- NEW FILE: biopython-py.patch ---
diff -Naur biopython-1.44/setup.py biopython-1.44-patched/setup.py
--- biopython-1.44/setup.py 2007-03-17 15:21:04.000000000 -0400
+++ biopython-1.44-patched/setup.py 2007-04-01 22:02:12.000000000 -0400
@@ -112,15 +112,14 @@
# Compile KDTree ? Not compiled by default
- print "\n*** Bio.KDTree *** NOT built by default "
- kdtree_msg = """
-The Bio.PDB.NeighborSearch module depends on the Bio.KDTree module,
-which in turn, depends on C++ code that does not compile cleanly on
-all platforms. Hence, Bio.KDTree is not built by default.
-
-Would you like to build Bio.KDTree ?"""
-
- if get_yes_or_no (kdtree_msg, 0):
+# print "\n*** Bio.KDTree *** NOT built by default "
+# kdtree_msg = """
+#The Bio.PDB.NeighborSearch module depends on the Bio.KDTree module,
+#which in turn, depends on C++ code that does not compile cleanly on
+#all platforms. Hence, Bio.KDTree is not built by default.
+#
+#Would you like to build Bio.KDTree ?"""
+# if get_yes_or_no (kdtree_msg, 0):
NUMPY_PACKAGES.append("Bio.KDTree")
NUMPY_EXTENSIONS.append(
CplusplusExtension('Bio.KDTree._CKDTree',
-------------------------------------------------------------------------
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