Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv3603
Added Files:
ccp4-x86_64.info ccp4-x86_64.patch
Log Message:
ccp4 for x86_64 as it requires its own blas/lapack to avoid runtime errors
--- NEW FILE: ccp4-x86_64.patch ---
diff -ruN ccp4-6.1.1-orig/ccp4i/etc/configure.def.dist
ccp4-6.1.1/ccp4i/etc/configure.def.dist
--- ccp4-6.1.1-orig/ccp4i/etc/configure.def.dist 2009-01-09
07:45:08.000000000 -0800
+++ ccp4-6.1.1/ccp4i/etc/configure.def.dist 2009-02-04 16:35:36.000000000
-0800
@@ -61,8 +61,8 @@
MESSAGE _text ""
BLT_LIBRARY _text ""
MENU_LENGTH _positiveint 25
-HYPERTEXT_VIEWER _text firefox
-START_NETSCAPE _text netscape
+HYPERTEXT_VIEWER _text Safari
+START_NETSCAPE _text open
O_MAPMAN _text mapman
MAPMAN_MAXSIZE _positiveint 4194304
QUANTA_MBKALL _text mbkall
diff -ruN ccp4-6.1.1-orig/ccp4i/etc/osx_ccp4_mail
ccp4-6.1.1/ccp4i/etc/osx_ccp4_mail
--- ccp4-6.1.1-orig/ccp4i/etc/osx_ccp4_mail 1969-12-31 16:00:00.000000000
-0800
+++ ccp4-6.1.1/ccp4i/etc/osx_ccp4_mail 2009-02-04 16:34:01.000000000 -0800
@@ -0,0 +1,164 @@
+#!/usr/bin/perl
[...1740 lines suppressed...]
CFLAGS="${COPTIM} ${XCFLAGS}"
FFTW_LIBS="-L${prefix}/lib -lrfftw -lfftw"
FFTW_CXXFLAGS="-I${prefix}/lib/fftw/fftw -I${prefix}/lib/fftw/rfftw
-I${prefix}/include"
+ FLIBS="-...@prefix@/lib/gcc4.4/lib -lgfortran"
export CFLAGS
+ export FLIBS
# must use --enable-float
xopts="--enable-float"
if test "$shared_lib" = yes; then
--- ccp4-6.1.1.orig/src/rapper/gc7.0/Makefile.in 2009-04-18
13:05:47.000000000 -0400
+++ ccp4-6.1.1/src/rapper/gc7.0/Makefile.in 2009-04-18 13:09:25.000000000
-0400
@@ -295,7 +295,7 @@
CYGPATH_W = @CYGPATH_W@
DARWIN_THREADS_FALSE = @DARWIN_THREADS_FALSE@
DARWIN_THREADS_TRUE = @DARWIN_THREADS_TRUE@
-DEFS = @DEFS@
+DEFS = @DEFS@ -D_XOPEN_SOURCE
DEPDIR = @DEPDIR@
ECHO = @ECHO@
ECHO_C = @ECHO_C@
--- NEW FILE: ccp4-x86_64.info ---
Package: ccp4
Version: 6.1.1
Revision: 9
GCC: 1
Architecture: x86_64
Source: ftp://ftp.%n.ac.uk/%n/%v/%n-%v-core-src.tar.gz
Source-MD5: 1d865d97c34de6e6f368ba03c3001a9b
SourceDirectory: %n-%v
#
Source2: http://chemistry.ucsc.edu/~wgscott/xtal/xtalfink/XCCPJiffy-custom.gz
Source2-MD5: 21568dd2475505929573a3fd452c538f
#
Source3: ftp://ftp.%n.ac.uk/%n/%v/phaser-2.1.4-cctbx-src.tar.gz
Source3-MD5: eb6371d4a7339fe81e71a9170fea614d
#
Source4: ftp://ftp.%n.ac.uk/%n/%v/updates/%n-%v-src-patch-04_03_09.tar.gz
Source4-MD5: 08ed8ebf484a9daced366671c74953dd
#
# Patches as of 11 May 2009 that are not in Source4
#
# 16/03/09
Source5: ftp://ftp.%n.ac.uk/%n/%v/updates/scala.f
Source5-MD5: 09583b9d3e61e66aa2af247ca0b9e5e0
Source6: ftp://ftp.%n.ac.uk/%n/%v/updates/version.fh
Source6-MD5: 570650d30f574f3a4f570dea5f58176d
# 06/03/2009
Source7: ftp://ftp.%n.ac.uk/%n/%v/updates/refmac5.tcl
Source7-MD5: e66892743c7ae0a3c9f4af9b2969821e
# 08/03/2009
Source8: ftp://ftp.%n.ac.uk/%n/%v/updates/scalepack2mtz.com
Source8-MD5: 4f6fda2a5c0e4f522d10402c1b2a5f6a
Source9: ftp://ftp.%n.ac.uk/%n/%v/updates/dtrek2mtz.com
Source9-MD5: fce3065015a7ba8613f066e6825e8b41
Source10: ftp://ftp.%n.ac.uk/%n/%v/updates/pname2.com
Source10-MD5: 248647ed1b8d9acdb1f9455b9c371095
# 11/03/2009 (revised 23/03/2009)
Source11: ftp://ftp.%n.ac.uk/%n/%v/updates/import_scaled.script
Source11-MD5: 574df5f9e0441f99a2a07eaf36b7164a
#
#
DescPort: <<
CCP4 is designed to compile with gfortran on OS X >= 10.4 by default.
Jack Howarth has provided multiple improvements in the patch file to
address several bugs and to permit optimization with gfortran at -O3.
Users typically install all of the ccp4 files into /xtal/ccp4-%v or
into /usr/local/xtal/ccp4-%v. In the present case, these files are
installed into %p/share/xtal/ccp4-%v. The library files are installed
into the directory %p/lib/ccp4-%v and this directory is symbolically
linked to %p/share/xtal/ccp4-%v/lib which is the canonical location.
Dynamic libraries are provided in the ccp4-shlibs splitoff package, and
static libraries are provided in the ccp4-dev splitoff package. The
configure files are patched so that the full path to the dynamic
libraries is hard-coded, per fink policy. This obviates the need to
set the DYLD_LIBRARY_PATH environment variable, which should remain
unset. The appropriate shell startup files are automatically sourced
when %p/bin/init.(c)sh is invoked upon shell startup; there is no
need to do so manually. The actual files are located in $CCP4/include.
If needed, please install the phaser, pointless and cctbx fink packages.
The ccp4i mail utility by default will only work on machines that run
a mail server. As a workaround, a public domain perl script called
osx_ccp4_mail is installed that glues the ccp4i mail button to the
Apple OS X Mail.app.
Further adaptations are commented in place in the patch, configure and
install scripts below. Relevant patches specific to this version that
are issued by CCP4 are now downloaded and applied individually, helping
to keep the ccp4.patch file from growing metastatically and also to
permit the user to verify that the latest patches have been applied.
These start with Source2 (above) and are applied individually at the
end of the PatchScript field.
Clipper libraries are not behaving properly when linked to fink fftw
so we return to the option of having ccp4 build its own private fftw.
Yes, I hate it too, but now all the examples pass the run-all test.
64-bit version appears to require ccp4's own blas/lapak to avoid
run-time errors.
<<
Depends: x11, tcltk, blt, gcc44-shlibs, %N-shlibs (= %v-%r)
BuildDepends: gcc44, f2c, fort77, tcltk-dev, x11-dev, xmkmf (>= 1.0.2-3), fink
(>= 0.24.12)
BuildConflicts: gpp4-dev, gpp4, ssm, ssm-dev, mmdb, mmdb-dev, clipper,
clipper-bin, clipper-dev, ccp4-onlylibs-dev, python
Replaces: phaser (<= 2.1.4-1), pointless (<= 1.2.18-1), mosflm (<= 7.0.3-3),
mosflm-small (<= 7.0.3-3), refmac (<= 5.5.0070-1), bundle-ccp4-intel,
clipper-bin, ccp4-gfortran, ccp4-gfortran-dev, bundle-ccp4-powerpc
Conflicts: <<
mosflm (<= 7.0.3-3),
mosflm-small (<= 7.0.3-3),
refmac (<= 5.5.0070-1),
bundle-ccp4-intel,
bundle-ccp4-powerpc,
ccp4-gfortran,
ccp4-gfortran-dev,
phaser (<= 2.1.4-1),
pointless (<= 1.2.18-1)
<<
NoSetCPPFLAGS: true
NoSetLDFLAGS: true
#
################################################################################
PatchFile: ccp4-x86_64.patch
PatchFile-MD5: f6f849585cd1077c19d8a8923906f9d1
PatchScript: <<
#!/bin/zsh -efv
#
umask 0022
# Now apply the primary patch
sed 's|@PREFIX@|%p|g' <%{PatchFile} | patch -p1
# Make sure it worked
if [[ $(grep "setenv CCP4_MASTER" include/ccp4.setup-dist | awk '{print
$3}') != "/xtal" ]];then
print "Patch failed!!!!!!!!!"
return 42
fi
# setup script for tcsh, zsh and bash users
export TEMPXTAL=$PWD:h
#
perl -pi.bak -e 's|/xtal|\$TEMPXTAL|g' include/ccp4.setup* #
build prefix (changed in install)
perl -pi.bak -e 's|/prefix|%p|g' include/ccp4.setup* #
location of tcktk, blt
perl -pi.bak -e 's|/usr/local/bin|%p/bin|g' include/ccp4.setup* # same
perl -pi.bak -e 's|limit stacksize 65536|limit stacksize unlimited|g'
include/ccp4.setup* # same
perl -pi.bak -e 's|ccp4_first_in_path=1|ccp4_first_in_path=0|g'
include/ccp4.setup*
perl -pi.bak -e 's|ccp4_first_in_path\ =\ 1|ccp4_first_in_path\ =\ 0|g'
include/ccp4.setup*
perl -pi.bak -e 's|setenv GFORTRAN_UNBUFFERED_ALL Y|# setenv
GFORTRAN_UNBUFFERED_ALL Y|g' include/ccp4.setup*
perl -pi.bak -e 's|export GFORTRAN_UNBUFFERED_ALL|# export
GFORTRAN_UNBUFFERED_ALL|g' include/ccp4.setup*
#
cp include/ccp4.setup-dist include/ccp4.setup
rm -f include/ccp4.setup-sh include/ccp4.setup*.bak
#
# Set up XCCPJiffy wrapper scripts in $CCP4/etc
# These are small wrapper scripts for xplot84driver and xloggraph generated
by the patch
chmod a+x etc/x*
# Fix the dylib install path in configure
perl -pi.bak -e 's|\$rpath|%p/lib/ccp4-%v|g' **/configure
#
#
# Now apply patches in Source5 and up:
cp ../scala.f src/scala_/.
cp ../version.fh src/scala_/.
cp ../refmac5.tcl ccp4i/tasks/.
cp ../scalepack2mtz.com ccp4i/templates/.
cp ../dtrek2mtz.com ccp4i/templates/.
cp ../pname2.com ccp4i/templates/.
cp ../import_scaled.script ccp4i/scripts/.
<<
################################################################################
CompileScript: <<
#!/bin/zsh -efv
umask 0022
# The build will fail if Norton Auto-Protect is running.
# Check to see if it is, and abort the installation with a
# warning to the user.
if [[ $(ps axww | grep NortonAutoProtect | wc -l) -gt 1 ]];then
print
"\e[1m******************************************************************************************************"
print
"******************************************************************************************************"
print
"******************************************************************************************************"
print ""
print "Norton AutoProtect must be suspended during CCP4
installation. Please do so now and then try again."
print ""
print
"******************************************************************************************************"
print
"******************************************************************************************************"
print
"******************************************************************************************************\e[0m"
sleep 15
return 1000
fi
# These are required for the build environment
export TEMPXTAL=$PWD:h
export CCP4_VERSION=""
export CCP4_MASTER=""
export BLTWISHPREFIX=""
export CCP4=""
source $PWD/include/ccp4.setup-zsh
[[ -d $CCP4 ]] || exit 1
export DYLD_LIBRARY_PATH=$CLIB
export GFORTRAN_UNBUFFERED_ALL="Y"
export rpath=%p/lib/ccp4-%v
export RPATH=%p/lib/ccp4-%v
export PATH=%p/lib/xmkmf/bin:$PATH
export IMAKEINCLUDE=-I%p/lib/X11/config
# === CONFIGURE ===>
# FC="%p/lib/gcc4.4/bin/gfortran" F_LIBS="-L%p/lib/gcc4.4/lib" ./configure
--with-shared-libs --with-x --with-fftw=%p Darwin
FC="%p/lib/gcc4.4/bin/gfortran" F_LIBS="-L%p/lib/gcc4.4/lib " ./configure
--with-netlib-lapack --with-shared-libs --with-x Darwin
#
# fix some post-configure bugs by getting rid of -lg2c
perl -pi.bak -e 's|-lg2c||g' x-windows/**/*akefile*
( cd x-windows/XCCPJIFFY; perl -pi.bak -e 's|-lgfortran|-lgfortran
-L%p/lib/gcc4.4/lib |g' *akefile* ) || exit 1
if [[ $(sw_vers -productVersion) < 10.5 ]]; then
perl -pi.bak -e 's| -flat_namespace -undefined suppress|
-twolevel_namespace -undefined dynamic_lookup|g' lib/src/Makefile
else
perl -pi.bak -e 's|-lcrt1.10.5.o||g' **/*akefile 2>/dev/null
perl -pi.bak -e 's|-lcrt1.10.6.o||g' **/*akefile 2>/dev/null
perl -pi.bak -e 's|-lcrt1.o||g' **/*akefile 2>/dev/null
fi
# Fix for pointless to prevent linking to gcc4.4 libraries as this creates a
run-time error
perl -pi.mod -e 's|-O2|-O3|g' src/pointless/Makefile
grep -v "gcc4.4" src/pointless/Makefile.mod >| src/pointless/Makefile
#################
make
make install
#################
# xloggraph will fail, but we will link it with fort77 below
#
# Make wrappers for xplot84driver and xloggraph, so rename the executables
cd x-windows/XCCPJIFFY
make msg_box.o ZDr2d.o EditString.o hardcopy_ctrl.o xloggraph.o
log_file.o tom_fortran_interface.o bits_and_pieces.o graphics.o
gcc -o xplot84driver xplot84driver.o plot84_file.o msg_box.o ZDr2d.o
EditString.o hardcopy_ctrl.o -Os -I/usr/include/X11R6 -L/usr/X11R6/lib -lXaw
-lXmu -lXt -lSM -lICE -lXpm -lXp -lXext -lX11 -lm -L/%p/lib/gcc4.4/lib
-lgfortran
cp xplot84driver $CBIN/xplot84driver.exe
if [[ -x $CBIN/xplot84driver ]];then
rm -f $CBIN/xplot84driver
fi
make xccpjiffy2idraw
cp xccpjiffy2idraw $CBIN/.
cd ..
make xdlmapman xdldataman
cp xdlmapman $CBIN/.
cp xdldataman $CBIN/.
#
# Manually link xloggraph with fort77 (fails in make)
echo ""
echo
"**********************************************************************"
echo "Re-linking xloggraph with fort77. Ignore previous error messages."
echo
"**********************************************************************"
echo ""
#
cd XCCPJIFFY
fort77 -o xloggraph msg_box.o ZDr2d.o EditString.o hardcopy_ctrl.o
xloggraph.o log_file.o tom_fortran_interface.o bits_and_pieces.o graphics.o -g
-Os -I/usr/include/X11R6 -L/usr/X11R6/lib -lXaw -lXmu -lXt -lSM -lICE -lXpm
-lXext -lX11 -lm -lgfortran -L%p/lib/gcc4.4/lib
#
sleep 10
#
cp xloggraph $CBIN/xloggraph.exe
if [[ -x $CBIN/xloggraph ]];then
rm -f $CBIN/xloggraph
fi
cd ../..
#
# Cleanup:
# Get rid of the corrupting influence of ccp4's own xml2-config:
if [[ -x $CBIN/xml2-config ]];then
/bin/rm -f $CBIN/xml2-config
fi
#
# several requests made from users to leave
# source code in place
/bin/rm -f **/*.o
/bin/rm -f **/*.bak
# /bin/rm -Rf src
# /bin/rm -Rf x-windows/libjwc/libjwc_c
# /bin/rm -Rf x-windows/libjwc/libjwc_f
# /bin/rm -Rf x-windows/xdl_view/src
# remove redundant library junk
/bin/rm -Rf lib/cctbx
/bin/rm -Rf lib/**/.libs
/bin/rm -f lib/ccif/libccif.dylib
/bin/rm -f lib/src/libccp4c.dylib
/bin/rm -f lib/src/libmmdb.dylib
#/bin/rm -R unsupported
/bin/rm -R testcomp*
/bin/rm -R BINARY*
cd $CLIB
# /bin/rm -f **/*.c
# /bin/rm -f **/*.f
# /bin/rm -f **/*.cpp
<<
################################################################################
InstallScript: <<
#!/bin/zsh -efv
umask 0022
export TEMPXTAL=$PWD:h
source $PWD/include/ccp4.setup-zsh
export DYLD_LIBRARY_PATH=$CLIB
ORIGDIR=$(dirname $PWD)
export PATH=%p/lib/xmkmf/bin:$PATH
export IMAKEINCLUDE=-I%p/lib/X11/config
# Change environment scripts to match final installation
perl -pi -e 's|\$TEMPXTAL|%p/share/xtal|g' include/ccp4.setup* #
install prefix
#
# Bugzilla number : #3593
perl -pi -e "s|$PWD|%p/share/xtal/%n-%v|g" share/pisa/pisa.cfg
#
#
cp ../XCCPJiffy-custom.gz XCCPJiffy.gz ; gunzip XCCPJiffy.gz; chmod a+x
XCCPJiffy
perl -pi -e 's|5.0.1|%v|g' XCCPJiffy
mv -f XCCPJiffy lib/X11/app-defaults/XCCPJiffy
#
perl -pi.bak -e 's|/src/fink.build/ccp4-%v-%r|/share/xtal|g'
bin/clipper-config
rm -f bin/clipper-config.bak
perl -pi.bak -e 's|lclipper |lclipper-core |g' bin/clipper-config
rm -f bin/clipper-config.bak
perl -pi.bak -e 's|lib/lib -lrfftw -lfftw |lib/ccp4-%v -lsrfftw -lsfftw
|g' bin/clipper-config
rm -f bin/clipper-config.bak
#
# Fix path in libfoo.la libtool files:
#
perl -pi.bak -e 's|/src/fink.build/ccp4-%v-%r/ccp4-%v/lib|/lib/ccp4-%v|g'
lib/**/*.la
/bin/rm -f lib/python*/site-packages/libxml2mod.la
/bin/rm -f lib/**/*.la.bak
#
# Now install:
#
mkdir -p %i/lib
cp -R lib %i/lib/ccp4-%v
mkdir -p %i/bin
#
mkdir -p %i/share/xtal/ccp4-%v/help
mkdir -p %i/share/man/man1
# set up man pages in a fink-compliant manner
cd $PWD/doc
mv rasmol.doc eightbit_rasmol.doc
foreach docfilepage ( *.doc )
cp ${docfilepage} %i/share/man/man1/${docfilepage:r}.1
cp ${docfilepage} %i/share/xtal/ccp4-%v/help/${docfilepage:r}
end
# back to build directory
cd ..
#
/bin/rm -rf lib
cp -R * %i/share/xtal/ccp4-%v/.
ln -s %p/lib/ccp4-%v %i/share/xtal/ccp4-%v/lib
#
# making scripts for %p/etc/profile.d
mkdir -p %i/etc/profile.d
#
echo "source %p/share/xtal/ccp4-%v/include/ccp4.setup" >
%i/etc/profile.d/ccp4.csh
echo "setenv CLIB %p/lib/ccp4-%v " >>
%i/etc/profile.d/ccp4.csh
#
echo "if [ -z \$ZSH_NAME ];then " >
%i/etc/profile.d/ccp4.sh
echo " source %p/share/xtal/ccp4-%v/include/ccp4.setup-bash " >>
%i/etc/profile.d/ccp4.sh
echo "else " >>
%i/etc/profile.d/ccp4.sh
echo " source %p/share/xtal/ccp4-%v/include/ccp4.setup-zsh" >>
%i/etc/profile.d/ccp4.sh
echo "fi " >>
%i/etc/profile.d/ccp4.sh
echo "export CLIB=%p/lib/ccp4-%v " >>
%i/etc/profile.d/ccp4.sh
#
chmod a+x %i/etc/profile.d/ccp4.*
#
chmod a+x %i/share/xtal/ccp4-%v/ccp4i/etc/osx_ccp4_mail
#
# chmod a+x %i/share/xtal/ccp4-%v/etc/ccp4help
#
ranlib %i/lib/ccp4-%v/*.a
ranlib %i/lib/ccp4-%v/**/*.a
#
perl -pi -e 's|%p/share/%p/share|%p/share|g'
%i/share/xtal/ccp4-%v/include/ccp4.setup* # fix
# remove build path from .la files
# perl -pi -e "s, \-L[^ ']*/%n-%v-%r/%n-%v/src/rapper/libxml2/.libs,
\-L %p/lib,g" %i/lib/%n-%v/python*/site-packages/**/*.la
# don't package these .la files
/usr/bin/find %i/share/xtal/%n-%v/src/rapper -name '*.la' -delete
/usr/bin/find %i/share/xtal/%n-%v/x-windows -name '*.la' -delete
# hand install these shared libraries for now
mv
%i/share/xtal/ccp4-%v/src/phaser/phaser-2.1.4/build/mac-osx/lib/libboost_python.dylib
%i/lib/ccp4-%v
install_name_tool -id %p/lib/ccp4-%v/libboost_python.dylib
%i/lib/ccp4-%v/libboost_python.dylib
mv
%i/share/xtal/ccp4-%v/x-windows/libjwc/libjwc_c/.libs/libjwc_c.0.1.1.dylib
%i/lib/ccp4-%v
install_name_tool -id %p/lib/ccp4-6.1.1/libjwc_c.0.dylib
%i/lib/ccp4-%v/libjwc_c.0.1.1.dylib
mv
%i/share/xtal/ccp4-%v/x-windows/xdl_view/src/.libs/libxdl_view.2.0.0.dylib
%i/lib/ccp4-%v
install_name_tool -id %p/lib/ccp4-%v/libxdl_view.2.dylib
%i/lib/ccp4-%v/libxdl_view.2.0.0.dylib
mv
%i/share/xtal/ccp4-%v/x-windows/xdl_view/src/.libs/libxdl_viewextra.0.0.0.dylib
%i/lib/ccp4-%v
install_name_tool -id %p/lib/ccp4-%v/libxdl_viewextra.0.dylib
%i/lib/ccp4-%v/libxdl_viewextra.0.0.0.dylib
# don't package .pyc files generated in the buildroot
/usr/bin/find %i/share/xtal/%n-%v/src/phaser/phaser-2.1.4 -name '*.pyc'
-delete
<<
################################################################################
PreRmScript: <<
/usr/bin/find %p/share/xtal/%n-%v/src/phaser/phaser-2.1.4 -name '*.pyo'
-delete
<<
################################################################################
PostInstScript: <<
PyVers=$( /usr/bin/python --version 2>&1 | awk '{print $NF}' )
if [[ $PyVers:r == 2.6 ]]; then
/usr/bin/python -O /usr/lib/python2.6/compileall.py -q
%p/share/xtal/%n-%v/src/phaser/phaser-2.1.4
elif [[ $PyVers:r == 2.5 ]]; then
/usr/bin/python -O /usr/lib/python2.5/compileall.py -q
%p/share/xtal/%n-%v/src/phaser/phaser-2.1.4
elif [[ $PyVers:r == 2.4 ]]; then
/usr/bin/python -O /usr/lib/python2.4/compileall.py -q
%p/share/xtal/%n-%v/src/phaser/phaser-2.1.4
fi
# Make the user read the license conditions
more %p/share/xtal/ccp4-%v/conditions.txt
<<
################################################################################
################################################################################
SplitOff: <<
Package: %N-shlibs
Description: CCP4 dynamic libraries
Files:<<
lib/ccp4-%v/*.*.dylib
lib/ccp4-%v/libccif.dylib
lib/ccp4-%v/libccp4c.dylib
lib/ccp4-%v/libmmdb.dylib
lib/ccp4-%v/libboost_python.dylib
<<
Shlibs: <<
%p/lib/ccp4-%v/libDiffractionImage.0.dylib 1.0.0 %n
(>= 6.1.1-1)
%p/lib/ccp4-%v/lib_DiffractionImage.0.dylib 1.0.0 %n
(>= 6.1.1-1)
%p/lib/ccp4-%v/libccif.dylib 0.0.0 %n
(>= 6.1.1-1)
%p/lib/ccp4-%v/libccp4c.dylib 0.0.0 %n
(>= 6.1.1-1)
%p/lib/ccp4-%v/libclipper-ccp4.2.dylib 3.0.0 %n
(>= 6.1.1-1)
%p/lib/ccp4-%v/libclipper-cif.2.dylib 3.0.0 %n
(>= 6.1.1-1)
%p/lib/ccp4-%v/libclipper-cns.0.dylib 1.0.0 %n
(>= 6.1.1-1)
%p/lib/ccp4-%v/libclipper-contrib.2.dylib 3.0.0 %n
(>= 6.1.1-1)
%p/lib/ccp4-%v/libclipper-core.2.dylib 3.0.0 %n
(>= 6.1.1-1)
%p/lib/ccp4-%v/libclipper-minimol.2.dylib 3.0.0 %n
(>= 6.1.1-1)
%p/lib/ccp4-%v/libclipper-mmdb.2.dylib 3.0.0 %n
(>= 6.1.1-1)
%p/lib/ccp4-%v/libclipper-phs.2.dylib 3.0.0 %n
(>= 6.1.1-1)
%p/lib/ccp4-%v/libjwc_c.0.dylib 2.0.0 %n
(>= 6.1.1-1)
%p/lib/ccp4-%v/libmmdb.dylib 0.0.0 %n
(>= 6.1.1-1)
%p/lib/ccp4-%v/libssm.0.dylib 1.0.0 %n
(>= 6.1.1-1)
%p/lib/ccp4-%v/libxdl_view.2.dylib 3.0.0 %n
(>= 6.1.1-1)
%p/lib/ccp4-%v/libxdl_viewextra.0.dylib 1.0.0 %n
(>= 6.1.1-1)
%p/lib/ccp4-%v/libfftw.2.dylib 3.0.0 %n
(>= 6.1.1-1)
%p/lib/ccp4-%v/librfftw.2.dylib 3.0.0 %n
(>= 6.1.1-1)
%p/lib/ccp4-%v/libboost_python.dylib 0.0.0 %n
(>= 6.1.1-6)
<<
DocFiles: CHANGES COPYING INSTALL INSTALL.html INSTALL.ps README PROBLEMS
academic_software_licence.pdf
<<
################################################################################
################################################################################
SplitOff2: <<
Package: %N-dev
BuildDependsOnly: true
Conflicts: gpp4-dev, ssm-dev, mmdb-dev, clipper-dev, ccp4-onlylibs-dev
Replaces: gpp4-dev, ssm-dev, mmdb-dev, clipper-dev, ccp4-onlylibs-dev
Description: CCP4 static libraries and libtool files
Files:<<
lib/ccp4-%v/*.a
lib/ccp4-%v/*.la
<<
DocFiles: CHANGES COPYING INSTALL INSTALL.html INSTALL.ps README PROBLEMS
academic_software_licence.pdf
<<
################################################################################
Description: Macromolecular crystallography package
DescDetail: <<
The CCP4 macromolecular crystallography suite has approximately
200 programs and utilities. This version includes the Clipper
libraries. Current phaser and cctbx programs are available as
separate fink packages.
Type "ccp4help" for a summary listing of all ccp4 programs.
Type "ccp4help foo" for a detailed description of program "foo."
Invoke optional ccp4i gui for the first run using "sudo ccp4i"
on 10.4, or "sudo /bin/zsh" followed by "source /sw/bin/init.sh ; ccp4i"
on 10.5 to permit global configuration. Thereafter, you can invoke
ccp4i without sudo.
This version compiles with the Apple Lapack/Blas framework.
License agreement is part of configure file -- print out form and mail in,
additional comments at http://sage.ucsc.edu/xtal/ccp4.html
CCP4 files will be installed under /sw/share/xtal/ccp4-6.0.99
This revision includes all available CCP4 patches as of June 28, 2007.
and new bash and zsh command completions specific to ccp4.
The ccp4-associated molecular graphics display program coot is also
available as a fink package. It builds against the GPL gpp4 libraries
rather than those of this package.
Thanks to Jack Howarth for many helpful improvements.
<<
DocFiles: <<
README CHANGES COPYING PROBLEMS INSTALL INSTALL.html INSTALL.ps
ccp4i_installation.html academic_software_licence.pdf
academic_software_licence.ps.gz academic_software_licence.rtf
<<
Homepage: http://www.ccp4.ac.uk
License: Commercial
Maintainer: W. G. Scott <wgsc...@users.sourceforge.net>
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