Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/libs/pythonmods In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv4098
Modified Files: biom-format-py.info Log Message: biom-format-py 1.2.0 Index: biom-format-py.info =================================================================== RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/libs/pythonmods/biom-format-py.info,v retrieving revision 1.2 retrieving revision 1.3 diff -u -d -r1.2 -r1.3 --- biom-format-py.info 23 Aug 2013 11:41:25 -0000 1.2 +++ biom-format-py.info 14 Oct 2013 20:54:36 -0000 1.3 @@ -1,22 +1,26 @@ Info2: << Package: biom-format-py%type_pkg[python] -Version: 1.1.2 -Revision: 2 +Version: 1.2.0 +Revision: 1 Description: Biological Observation Matrix Format Type: python (2.7) License: GPL Maintainer: Hanspeter Niederstrasser <nie...@users.sourceforge.net> Depends: << numpy-py%type_pkg[python], + pyqi-py%type_pkg[python], python%type_pkg[python] << BuildDepends: << cython-py%type_pkg[python], python%type_pkg[python] << +Suggests: << + dateutil-py%type_pkg[python] +<< Source: ftp://thebeast.colorado.edu/pub/biom-format-releases/biom-format-%v.tar.gz -Source-MD5: 66c7b9cc8dc199e37f96aa64aaa77d15 -Source-Checksum: SHA1(7ca5039e19bbfeb559bddc45b1ecbd7a3d2eaeea) +Source-MD5: c376830c5f4b5d4a7aacd5fe0536ab8e +Source-Checksum: SHA1(f07c9b2c13214eba422f58296b45818eeff5557d) GCC: 4.0 CompileScript: << @@ -26,32 +30,34 @@ TestDepends: << << TestScript: << - PYTHONPATH=`pwd`/python-code:$PYTHONPATH %p/bin/python%type_raw[python] python-code/tests/all_tests.py || exit 2 + PYTHONPATH=`pwd`/python-code:$PYTHONPATH %p/bin/python%type_raw[python] python-code/tests/test_util.py || exit 2 + PYTHONPATH=`pwd`/python-code:$PYTHONPATH %p/bin/python%type_raw[python] python-code/tests/test_unit_test.py || exit 2 << << InstallScript: << #!/bin/sh -ev %p/bin/python%type_raw[python] setup.py install --root %d --prefix %p - for file in add_metadata biom_validator convert_biom print_biom_python_config print_biom_table_summary subset_biom test_biom_validator; do + for file in add_metadata biom_validator convert_biom print_biom_python_config print_biom_table_summary subset_biom; do mv %i/bin/$file.py %i/bin/$file.py-py%type_pkg[python] done + # biom needs special case + mv %i/bin/biom %i/bin/biom-py%type_pkg[python] << -DocFiles: COPYING ChangeLog README.md +DocFiles: COPYING README.md PostInstScript: << - update-alternatives --install %p/bin/add_metadata.py add_metadata %p/bin/add_metadata.py-py%type_pkg[python] %type_pkg[python] \ + update-alternatives --install %p/bin/biom biom %p/bin/biom-py%type_pkg[python] %type_pkg[python] \ + --slave %p/bin/add_metadata.py add_metadata %p/bin/add_metadata.py-py%type_pkg[python] \ --slave %p/bin/biom_validator.py biom_validator %p/bin/biom_validator.py-py%type_pkg[python] \ --slave %p/bin/convert_biom.py convert_biom %p/bin/convert_biom.py-py%type_pkg[python] \ --slave %p/bin/print_biom_python_config.py print_biom_python_config %p/bin/print_biom_python_config.py-py%type_pkg[python] \ --slave %p/bin/print_biom_table_summary.py print_biom_table_summary %p/bin/print_biom_table_summary.py-py%type_pkg[python] \ - --slave %p/bin/subset_biom.py subset_biom %p/bin/subset_biom.py-py%type_pkg[python] \ - --slave %p/bin/test_biom_validator.py test_biom_validator %p/bin/test_biom_validator.py-py%type_pkg[python] \ - + --slave %p/bin/subset_biom.py subset_biom %p/bin/subset_biom.py-py%type_pkg[python] << PreRmScript: << if [ $1 != "upgrade" ]; then - update-alternatives --remove add_metadata %p/bin/add_metadata.py-py%type_pkg[python] + update-alternatives --remove biom %p/bin/biom-py%type_pkg[python] fi - << +<< Homepage: http://biom-format.org/ DescDetail: << The BIOM file format (canonically pronounced biome) is designed to be a ------------------------------------------------------------------------------ October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register > http://pubads.g.doubleclick.net/gampad/clk?id=60134071&iu=/4140/ostg.clktrk _______________________________________________ Fink-commits mailing list Fink-commits@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.cvs