Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv30071
Added Files:
microbiomeutil.info
Log Message:
new pkg microbiomeutil 20110519
--- NEW FILE: microbiomeutil.info ---
Package: microbiomeutil
Version: 20110519
Revision: 1
Description: Microbiome analysis tools
License: BSD
Maintainer: Hanspeter Niederstrasser <nie...@users.sourceforge.net>
Source: mirror:sourceforge:microbiomeutil/microbiomeutil-r%v.tgz
Source-MD5: 11eaac4b0468c05297ba88ec27bd4b56
Source-Checksum: SHA1(57fb144de76152447abbe3929357ff8bb887b130)
CompileScript: <<
make
<<
InfoTest: <<
TestDepends: cdbfasta
TestScript: <<
#!/bin/sh -ev
make -j1 test || exit 2
### need to clean out all the generated files created during
InfoTest
pushd ChimeraSlayer/sample_data
make clean
popd
pushd NAST-iEr/sample_data
make clean
rm formatdb.log
popd
pushd WigeoN/sample_data
make clean
popd
pushd RESOURCES
make clean
popd
<<
<<
InstallScript: <<
#!/bin/sh -ev
mkdir -p %i/share/%n/doc
install -m 644 docs/microbiomeutil.{asciidoc,html} %i/share/%n/doc
cp -Rp docs/images %i/share/%n/doc/
mkdir -p %i/lib/%n
cp -Rp ChimeraSlayer %i/lib/%n
cp -Rp NAST-iEr %i/lib/%n
cp -Rp WigeoN %i/lib/%n
cp -Rp RESOURCES %i/lib/%n
<<
DocFiles: README
Homepage: http://microbiomeutil.sourceforge.net/
DescDetail: <<
Tools from the Broad Institute for analysing microbiome data.
Includes:
ChimeraSlayer
NAST-iEr
WigeoN
16S reference sequences
Chimeric 16S rRNA sequence formation and detection in Sanger and
454-pyrosequenced PCR amplicons. Haas BJ, Gevers D, Earl A, Feldgarden
M, Ward DV, Giannokous G, Ciulla D, Tabbaa D, Highlander SK, Sodergren
E, Methe B, Desantis TZ, Petrosino JF, Knight R, Birren BW. Genome Res.
2011 Mar;21(3):494-504. Epub 2011 Jan 6.
<<
DescPackaging: <<
TreeChopper is not included because it needs bioperl, which is perl-
varianted. Including bioperl would necessitate dist-varianting this pkg.
AmosCmp16Spipeline is not included because it requires modification of other
tools that might possibly be installed by Fink in the future.
<<
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