Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sc8-pr-cvs17:/tmp/cvs-serv9768
Modified Files:
bio-emboss-pm.info
Added Files:
bio-emboss-pm.patch
Log Message:
new upstream, compatible with emboss 5.0.0
--- NEW FILE: bio-emboss-pm.patch ---
diff -Naur Bio-Emboss-5.0.0.1/Makefile.PL Bio-Emboss-5.0.0.1-patched/Makefile.PL
--- Bio-Emboss-5.0.0.1/Makefile.PL 2007-08-08 10:52:08.000000000 -0400
+++ Bio-Emboss-5.0.0.1-patched/Makefile.PL 2007-09-20 18:23:42.000000000
-0400
@@ -11,7 +11,7 @@
# (if you did no "make install" of EMBOSS,
# put here the path to the source code)
-$EMB_ROOT = "";
+$EMB_ROOT = "@PREFIX@";
#$EMB_ROOT = "/usr/local";
@@ -19,7 +19,7 @@
# XLIB and LIBS from the EMBOSS Makefile
# (<emboss-build-dir>/emboss/Makefile)
-$EMB_EXT_LIBS = "";
+$EMB_EXT_LIBS = "@PREFIX@/lib";
#$EMB_EXT_LIBS = "-L/usr/X11R6/lib -lX11 -lm -lgd -lpng -lz";
#$EMB_EXT_LIBS = "-L/usr/openwin/lib -lX11 -lsocket -lm -lnsl -lgd -lpng -lz";
@@ -89,7 +89,8 @@
}
if (-d "$EMB_ROOT/include") {
- $EMB_INC = "-I$EMB_ROOT/include";
+# $EMB_INC = "-I$EMB_ROOT/include";
+ $EMB_INC = "[EMAIL PROTECTED]@/include/EMBOSS [EMAIL
PROTECTED]@/include/eplplot";
} else {
$EMB_INC = join " ", map { "-I$EMB_ROOT/$_" } grep { -d "$EMB_ROOT/$_"}
@emb_lib_dirs;
}
@@ -101,7 +102,7 @@
# --- look for EMBOSS in $EMB_ROOT and $EMB_SRC_ROOT
# (disable if you change $EMB_LIBS or $EMB_INC manually)
# ---- check function needs update
-$check_installation = 0;
+#$check_installation = 0;
# --- trying to get the EMBOSS version from the application 'embossversion'
Index: bio-emboss-pm.info
===================================================================
RCS file:
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/bio-emboss-pm.info,v
retrieving revision 1.7
retrieving revision 1.8
diff -u -d -r1.7 -r1.8
--- bio-emboss-pm.info 16 Jun 2007 22:45:02 -0000 1.7
+++ bio-emboss-pm.info 21 Sep 2007 02:58:56 -0000 1.8
@@ -1,39 +1,25 @@
Info2: <<
Package: bio-emboss-pm%type_pkg[perl]
-Version: 4.1.0
+Version: 5.0.0.1
Revision: 1
Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
Distribution: (%type_pkg[perl] = 581) 10.3, (%type_pkg[perl] = 581) 10.4,
(%type_pkg[perl] = 584) 10.3, (%type_pkg[perl] = 584) 10.4
Type: perl (5.8.1 5.8.6)
Source: http://www.cpan.org/modules/by-module/Bio/Bio-Emboss-%v.tar.gz
-Source-MD5: 461eb81fbc678bf5ae247d10ba53f964
-
-BuildDepends: emboss-ajax4-dev (>=4.1.0), emboss-nucleus4-dev (>=4.1.0),
emboss-plplot5-dev (>=4.1.0)
-Depends: emboss-ajax4-shlibs (>=4.1.0), emboss-nucleus4-shlibs (>=4.1.0),
emboss-plplot5-shlibs (>=4.1.0), libwww-pm%type_pkg[perl], io-string-pm
-
-UpdatePOD: true
-PatchScript: <<
- perl -pi.bak -e 's|\$EMB_ROOT = \"\"|\$EMB_ROOT = \"%p\"|' Makefile.PL;
- perl -pi.bak -e 's|\$check_installation = 0|\#\$check_installation = 0|'
Makefile.PL;
- perl -pi.bak -e 's|test "\$EMB_SRC_ROOT" != "" &&||' Makefile.PL;
-
- perl -pi.bak -e 's|ajhist.h|%p/include/EMBOSS/ajhist.h|' Emboss_hist.xs;
- perl -pi.bak -e 's|ajlist.h|%p/include/EMBOSS/ajlist.h|' Emboss_list.xs;
- perl -pi.bak -e 's|embest.h|%p/include/EMBOSS/embest.h|' Emboss_embest.xs;
+Source-MD5: 02c24eedae3ec9765baa3c669ecca533
- perl -pi.bak -e 's|ajhist.h|%p/include/EMBOSS/ajhist.h|'
deprecated_Emboss_hist.xs;
+BuildDepends: emboss-ajax5-dev (>=5.0.0-3), emboss-nucleus5-dev (>=5.0.0-3),
emboss-plplot5-dev (>=5.0.0-3)
+Depends: emboss (>=5.0.0-3), emboss-ajax5-shlibs (>=5.0.0-3),
emboss-nucleus5-shlibs (>=5.0.0-3), emboss-plplot5-shlibs (>=5.0.0-3),
libwww-pm%type_pkg[perl], io-string-pm
- perl -pi.bak -e 's|emboss.h|%p/include/EMBOSS/emboss.h|' emboss_perl.h;
-<<
+PatchScript: sed -e 's|@PREFIX@|%p|g' < %a/%{ni}.patch | patch -p1
InstallScript: <<
%{default_script}
-
make epods;
-
/bin/mv %i/share/man %i/lib/perl5/%type_raw[perl]
<<
+UpdatePOD: true
DocFiles: README MANIFEST Changes
Description: Perl interface to EMBOSS
DescDetail: <<
-------------------------------------------------------------------------
This SF.net email is sponsored by: Microsoft
Defy all challenges. Microsoft(R) Visual Studio 2005.
http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/
_______________________________________________
Fink-commits mailing list
Fink-commits@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/fink-commits
