Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci In directory sfp-cvsdas-3.v30.ch3.sourceforge.com:/tmp/cvs-serv20559
Modified Files: emboss.info emboss.patch Log Message: new upstream version Index: emboss.patch =================================================================== RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/emboss.patch,v retrieving revision 1.19 retrieving revision 1.20 diff -u -d -r1.19 -r1.20 --- emboss.patch 15 Apr 2010 02:14:21 -0000 1.19 +++ emboss.patch 24 Jul 2010 19:56:26 -0000 1.20 @@ -1,7 +1,20 @@ -diff -Nurd EMBOSS-6.2.0/ajax/acd/Makefile.in EMBOSS-6.2.0-patched/ajax/acd/Makefile.in ---- EMBOSS-6.2.0/ajax/acd/Makefile.in 2010-01-15 05:54:39.000000000 -0500 -+++ EMBOSS-6.2.0-patched/ajax/acd/Makefile.in 2010-03-08 08:52:52.000000000 -0500 -@@ -72,7 +72,7 @@ +diff -Nurd EMBOSS-6.3.1/README.fixes EMBOSS-6.3.1-patched/README.fixes +--- EMBOSS-6.3.1/README.fixes 1969-12-31 19:00:00.000000000 -0500 ++++ EMBOSS-6.3.1-patched/README.fixes 2010-07-21 05:25:27.000000000 -0400 +@@ -0,0 +1,9 @@ ++The files in this directory are bugfix replacements for files in ++the EMBOSS-6.3.1 distribution. Just drop the replacement files in ++the location shown and redo the 'make install.' [...6542 lines suppressed...] -@@ -198,9 +198,8 @@ - ajFmtPrintS(docroot,"%Sprograms%shtml%s", - docrootinst,SLASH_STRING,SLASH_STRING); - else -- ajFmtPrintS(docroot,"%Shtml%semboss%sapps%s", -- docrootinst,SLASH_STRING,SLASH_STRING, -- SLASH_STRING); -+ ajFmtPrintS(docroot,"%Sprograms%shtml%s", -+ docrootinst,SLASH_STRING,SLASH_STRING); - } - } - else -@@ -349,4 +348,4 @@ - ajStrDel(&pre); - - return; --} -+} - - Index: emboss.info =================================================================== RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/emboss.info,v retrieving revision 1.38 retrieving revision 1.39 diff -u -d -r1.38 -r1.39 --- emboss.info 15 Apr 2010 02:14:21 -0000 1.38 +++ emboss.info 24 Jul 2010 19:56:26 -0000 1.39 @@ -1,52 +1,46 @@ Package: emboss -Version: 6.2.0 -Revision: 4 +Version: 6.3.1 +Revision: 1 #Distribution: 10.4, 10.5 + Depends: << %N-ajax6-shlibs (>= %v-%r), %N-nucleus6-shlibs (>= %v-%r), %N-plplot3-shlibs (>= %v-%r), - x11, - x11-shlibs, - libpng3-shlibs, - libjpeg-shlibs, - gd2-shlibs, - system-java (>= 1.5.0), - fontconfig2-shlibs (>= 2.4.1-1), freetype219-shlibs (>= 2.3.8-2), - libiconv + fontconfig2-shlibs (>= 2.4.1-1), + gd2-shlibs, + libiconv, + libjpeg-shlibs, + libpng3-shlibs, + system-java (>= 1.5.0), + x11, + x11-shlibs << + BuildDepends: << - libpng3, - libjpeg, - gd2, - libiconv-dev, - x11-dev, - system-java-dev (>= 1.5.0), - freetype219, + fink (>= 0.24.12), fontconfig2-dev (>= 2.4.1-1), freetype219 (>= 2.3.8-2), - fink (>= 0.24.12) + gd2, + libiconv-dev, + libjpeg, + libpng3, + libtool2 (= 2.2.6b-1), + system-java-dev (>= 1.5.0), + x11-dev << + Source: mirror:custom:EMBOSS-%v.tar.gz CustomMirror: << Primary: ftp://emboss.open-bio.org/pub/EMBOSS/ << -Source-MD5: 2e2937dd0493814ca0f64981f4c79319 - -Source2: ftp://emboss.open-bio.org/pub/EMBOSS/fixes/jemboss.jar -Source2-MD5: 739d0910e28b20c7defef3283b392c8b - -Source3: ftp://emboss.open-bio.org/pub/EMBOSS/fixes/density.2.density.gif -Source3-MD5: e8a55a1427719238d983c078937db4f6 - -Source4: ftp://emboss.open-bio.org/pub/EMBOSS/fixes/density.3.density.gif -Source4-MD5: e47d9c3ad7496289d21665edeb7cecdc +Source-MD5: 04d1179b6261103a77e396d54f8ac38e #SetCPPFLAGS: -Dstat64=stat PatchFile: %n.patch -PatchFile-MD5: 574519343f1dc9078fbe14cef21a6bce +PatchFile-MD5: 381f5ca50a03fee61b7a24baf5cd87cf ConfigureParams: << --with-java=/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home \ @@ -56,14 +50,6 @@ --docdir=%p/share/EMBOSS << -CompileScript: << - mv ../jemboss.jar %b/jemboss/lib/ - mv ../density.2.density.gif %b/doc/programs/html/ - mv ../density.3.density.gif %b/doc/programs/html/ - ./configure %c - make -<< - Installscript: << make install DESTDIR=%d mkdir -p %i/include/EMBOSS @@ -76,14 +62,14 @@ Package: %N-ajax6-shlibs Depends: << %N-plplot3-shlibs (>= %v-%r), - libpng3-shlibs, - libjpeg-shlibs, + fontconfig2-shlibs (>= 2.4.1-1), + freetype219-shlibs (>= 2.3.8-2), gd2-shlibs, libiconv, - x11-shlibs, - fontconfig2-shlibs (>= 2.4.1-1), - freetype219-shlibs (>= 2.3.8-2) - << + libjpeg-shlibs, + libpng3-shlibs, + x11-shlibs + << DocFiles: ChangeLog COPYING README Files: << lib/EMBOSS/libajax.6*.dylib @@ -126,16 +112,10 @@ lib/EMBOSS/libepcre* lib/EMBOSS/libezlib* include/EMBOSS/aj*.h - include/EMBOSS/crc32.h - include/EMBOSS/deflate.h include/EMBOSS/ens*.h - include/EMBOSS/exp*.h - include/EMBOSS/inf*.h - include/EMBOSS/pcre*.h - include/EMBOSS/pcre_printint.src - include/EMBOSS/trees.h - include/EMBOSS/ucp.h - include/EMBOSS/z*.h + include/eexpat + include/epcre + include/ezlib << BuildDependsOnly: True << @@ -166,7 +146,15 @@ << SplitOff30: << Package: %N-plplot3-shlibs - Depends: libpng3-shlibs, libjpeg-shlibs, gd2-shlibs, libiconv, x11-shlibs, fontconfig2-shlibs (>= 2.4.1-1), freetype219-shlibs (>= 2.3.8-2) + Depends: << + fontconfig2-shlibs (>= 2.4.1-1), + freetype219-shlibs (>= 2.3.8-2), + gd2-shlibs, + libpng3-shlibs, + libjpeg-shlibs, + libiconv, + x11-shlibs + << # identical Shlibs-supplier package was previously named as "5" and "6" # uses "3" as of 6.1.0-4 to match .dylib filename Replaces: %N (<< 5.0.0-1), %N-plplot5-shlibs, %N-plplot6-shlibs @@ -187,7 +175,7 @@ Files: << lib/libeplplot* lib/EMBOSS/libeplplot* - include/eplplot/*.h + include/eplplot << BuildDependsOnly: True << @@ -198,8 +186,9 @@ << DocFiles: << - AUTHORS ChangeLog COMPAT COPYING FAQ INSTALL KNOWN_BUGS LICENSE NEWS PROBLEMS README THANKS + AUTHORS ChangeLog COMPAT COPYING FAQ INSTALL KNOWN_BUGS LICENSE NEWS PROBLEMS README README.fixes THANKS << + Description: Molecular Biology Open Software Suite DescDetail: << EMBOSS is a free Open Source software analysis package specially @@ -220,6 +209,7 @@ Install kemboss-qt4 for a GUI that works either in Aqua or X11. << + DescPort: << dmacks added explicit linking to libs that supply symbols used by the shared libraries here. This prevents things that link against @@ -230,6 +220,7 @@ against each other and patched to assure use of EMBOSS's own pcre headers (libpcre doesn't understand ABI compatibility rules:( << + Maintainer: Koen van der Drift <drift...@users.sourceforge.net> Homepage: http://emboss.sourceforge.net License: GPL ------------------------------------------------------------------------------ This SF.net email is sponsored by Sprint What will you do first with EVO, the first 4G phone? Visit sprint.com/first -- http://p.sf.net/sfu/sprint-com-first _______________________________________________ Fink-commits mailing list Fink-commits@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.cvs