On Dec 4, 2007, at 1:07 AM, Daniel Macks wrote:
In particular,
it's supplied by the deprecated_Emboss_str.o file in the
bio-emboss-pm586 build dir (nm on that file reports it as T).
Ahaaa - because I earlier got many warnings for deprecacted files (eg
deprecated_Emboss_str.c:3878: warning:
Koen van der Drift wrote:
First of all, thanks for all the help and suggestions. Little by little
I am undestanding more of the whole building process.
Now for the results :)
Unfortunately, I still get the same error:
t/1Can't load
First of all, thanks for all the help and suggestions. Little by
little I am undestanding more of the whole building process.
Now for the results :)
Using JF's test, I don't see any errors, ie nm doesn't print any
symbol names. (BTW, could that script be useful in the validation code
of
On Dec 3, 2007, at 10:01 PM, Peter O'Gorman wrote:
Yes, but the loader is not looking for ajStrTokenCount, it is looking
for XS_Bio__Emboss_ajStrTokenCount. And that is undefined.
Did you do jfm's magic on Emboss.bundle?
that gives:
Macintosh:Emboss koen$ nm -mgu Emboss.bundle | fgrep -v
On Mon, Dec 03, 2007 at 09:43:51PM -0500, Koen van der Drift wrote:
First of all, thanks for all the help and suggestions. Little by
little I am undestanding more of the whole building process.
Now for the results :)
Using JF's test, I don't see any errors, ie nm doesn't print any
On Tue, Dec 04, 2007 at 01:07:42AM -0500, Daniel Macks wrote:
Bug that doesn't affect anything: in the bio-emboss-pm.patch,
$EMB_EXT_LIBS should be [EMAIL PROTECTED]@/lib (need to pass the actual
linker flag, not just the pathname where the libs are).
Or actually, don't need to pass anything
On Dec 2, 2007, at 1:07 AM, Peter O'Gorman wrote:
I suggest that you find out what plsc is (rebuild the package that
makes
libajaxg.5.dylib, and grep for it) and why it is not available (what
provides it? grep -rl plsc /sw/lib
Thanks Peter,
The grep command revealed two broken aliases.
On Dec 2, 2007, at 10:55 AM, Koen van der Drift wrote:
On Dec 2, 2007, at 1:07 AM, Peter O'Gorman wrote:
I suggest that you find out what plsc is (rebuild the package that
makes
libajaxg.5.dylib, and grep for it) and why it is not available (what
provides it? grep -rl plsc /sw/lib
Koen van der Drift wrote:
On Dec 2, 2007, at 10:55 AM, Koen van der Drift wrote:
But, I now get another similar error:
t/1Can't load '/sw/src/fink.build/bio-emboss-pm588-5.0.0.1-1/Bio-
Emboss-5.0.0.1/blib/arch/auto/Bio/Emboss/Emboss.bundle' for module
Bio::Emboss:
On Dec 2, 2007, at 11:35 PM, Peter O'Gorman wrote:
However, now I get the following, again similar error:
t/1Can't load '/sw/src/fink.build/bio-emboss-pm588-5.0.0.1-1/Bio-
Emboss-5.0.0.1/blib/arch/auto/Bio/Emboss/Emboss.bundle' for module
Bio::Emboss:
On 03 Dec 2007, at 05:35, Peter O'Gorman wrote:
Did you check with otool -L that libeplplot loads libX11?
But I see that Peter will give you a quicker fix - at least for
this specific problem - the principle is the same, and if
you want to be thorough you go through the check I
suggested _ it
On 03 Dec 2007, at 05:59, Koen van der Drift wrote:
On Dec 2, 2007, at 11:49 PM, Jean-François Mertens wrote:
But I see that Peter will give you a quicker fix - at least for
this specific problem - the principle is the same, and if
you want to be thorough you go through the check I
Hooray for upstream bugs!
All of the shared libraried in emboss-5.0.0-3 are deficient in their
linkages. They don't link any other libraries, yet they all use
symbols from other libraries. See attached file for output from the
fink-dyld-link-test thing in my experimental/ directory on cvs.sf to
On Mon, Dec 03, 2007 at 12:58:18AM -0500, Daniel Macks wrote:
Hooray for upstream bugs!
All of the shared libraried in emboss-5.0.0-3 are deficient in their
linkages. They don't link any other libraries, yet they all use
symbols from other libraries. See attached file for output from the
On 03 Dec 2007, at 07:02, Peter O'Gorman wrote:
Jean-François Mertens wrote:
On 03 Dec 2007, at 05:35, Peter O'Gorman wrote:
Did you check with otool -L that libeplplot loads libX11?
But I see that Peter will give you a quicker fix - at least for
this specific problem - the principle is
Koen van der Drift wrote:
Hi,
I am getting the following error during the test phase of a perl-
module package on 10.5:
t/1Can't load '/sw/src/fink.build/bio-emboss-pm588-5.0.0.1-1/Bio-
Emboss-5.0.0.1/blib/arch/auto/Bio/Emboss/Emboss.bundle' for module
Bio::Emboss:
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