Re: [Fink-users] Failed: phase compiling: octave-atlas-3.0.0-3 failed
actually, I was trying to install the gdl package and it failed at the octave-atlas step. but if I can be of any help (I am rather a newbie than an expert of fink...), I can try any suggestion Yann Segfaults are hard to diagnose (remember the last one about octave-forge, Ben ..) And BTW, I see the failed test (/sw/share/octave/3.0.0/m/sparse/ pcg.m) is in the sparse directory, and contains several refs to sparsity; suitesparse might not be involved ?? JF It is possible. If Yann is up to the task of helping isolate the problem, we can have him run test pcg verbose That should tell us what test is actually failing. I suspect the left-divide because that problem has already been identified. However, I'm confused as to why Yann is encountering it ... unless he is using Octave's developer sources form Feb to the mid-Mar. Ben - Check out the new SourceForge.net Marketplace. It's the best place to buy or sell services for just about anything Open Source. http://ad.doubleclick.net/clk;164216239;13503038;w?http://sf.net/marketplace ___ Fink-users mailing list Fink-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-users
Re: [Fink-users] Failed: phase compiling: octave-atlas- 3.0.0-3 failed
Yann Clénet yann.clenet at free.fr writes: actually, I was trying to install the gdl package and it failed at the octave-atlas step. but if I can be of any help (I am rather a newbie than an expert of fink...), I can try any suggestion Yann hmmm... looking at the dependencies for gdl, I don't see why octave-atlas is needed. Alexander/JF should be more help with that. Regarding octave-atlas, you might try installing octave instead. Please start by replacing the make check line in octave.info and then $ fink remove octave-atlas $ fink install octave $ fink install gdl On both my Intel and PPC based Macs fink install octave works for me ... I haven't tried to install gdl. - Check out the new SourceForge.net Marketplace. It's the best place to buy or sell services for just about anything Open Source. http://ad.doubleclick.net/clk;164216239;13503038;w?http://sf.net/marketplace ___ Fink-users mailing list Fink-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-users
Re: [Fink-users] Failed: phase compiling: octave-atlas- 3.0.0-3 failed
On Monday 31 March 2008 07:19:05 am Ben Abbott wrote: Yann Clénet yann.clenet at free.fr writes: actually, I was trying to install the gdl package and it failed at the octave-atlas step. but if I can be of any help (I am rather a newbie than an expert of fink...), I can try any suggestion Yann hmmm... looking at the dependencies for gdl, I don't see why octave-atlas is needed. Alexander/JF should be more help with that. Regarding octave-atlas, you might try installing octave instead. Please start by replacing the make check line in octave.info and then $ fink remove octave-atlas $ fink install octave $ fink install gdl On both my Intel and PPC based Macs fink install octave works for me ... I haven't tried to install gdl. I was surprised when encountered this myself. gdl depends on plplot which depends on octave | octave-atlas -- Alexander K. Hansen akh AT finkproject DOT org Fink User Liaison and Documenter - Check out the new SourceForge.net Marketplace. It's the best place to buy or sell services for just about anything Open Source. http://ad.doubleclick.net/clk;164216239;13503038;w?http://sf.net/marketplace ___ Fink-users mailing list Fink-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-users
Re: [Fink-users] Failed: phase compiling: octave-atlas-3.0.0-3 failed
Alexander Hansen wrote: It might be of interest to try the suitesparse on the tracker (I'm working my way to it). Same _ no problem here with fink -m rebuild octave-atlas JF - Check out the new SourceForge.net Marketplace. It's the best place to buy or sell services for just about anything Open Source. http://ad.doubleclick.net/clk;164216239;13503038;w?http://sf.net/marketplace ___ Fink-users mailing list Fink-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-users
Re: [Fink-users] Failed: phase compiling: octave-atlas-3.0.0-3 failed
On Mar 31, 2008, at 9:17 AM, Alexander K. Hansen wrote: On Monday 31 March 2008 07:19:05 am Ben Abbott wrote: Yann Clénet yann.clenet at free.fr writes: actually, I was trying to install the gdl package and it failed at the octave-atlas step. but if I can be of any help (I am rather a newbie than an expert of fink...), I can try any suggestion Yann hmmm... looking at the dependencies for gdl, I don't see why octave-atlas is needed. Alexander/JF should be more help with that. Regarding octave-atlas, you might try installing octave instead. Please start by replacing the make check line in octave.info and then $ fink remove octave-atlas $ fink install octave $ fink install gdl On both my Intel and PPC based Macs fink install octave works for me ... I haven't tried to install gdl. I was surprised when encountered this myself. gdl depends on plplot which depends on octave | octave-atlas Sounds like good news for Yann. If he chooses to install octave instead of octave-atlas, he should have a functional gdl. Back the the problem with Octave-atlas, I tried to build on my ppc based Mac, but the build of atlas failed. Some of what I encountered is below. $ fink install atlas atlas-shlibs [...] gcc -DL2SIZE=4194304 -I/sw/src/fink.build/atlas-3.8.1-1/bld/include -I/ sw/s rc/fink.build/atlas-3.8.1-1/bld/../ATLAS//include -I/sw/src/ fink.build/atla s-3.8.1-1/bld/../ATLAS//include/contrib -DAdd_ -DF77_INTEGER=int - DStringSu nStyle -DATL_OS_OSX -DATL_ARCH_PPCG4 -DATL_CPUMHZ=1499 - DATL_AltiVec -DATL_ GAS_PPC -O3 -maltivec -mabi=altivec -mcpu=7400 -mtune=7400 -no- cpp-precomp -faltivec -m32 -DATL_BETA=1 -c cmm_b1.c gcc: unrecognized option '-no-cpp-precomp' cmm_b1.c: In function 'ATL_cJIK80x80x80TN80x80x0_a1_b1': cmm_b1.c:147: error: can't convert value to a vector cmm_b1.c:153: warning: use of 'long' in AltiVec types is deprecated; use 'int' cmm_b1.c:153: error: can't convert between vector values of different size make[6]: *** [cBuildCobjs] Error 1 make[5]: *** [cmmucase] Error 2 [... snip ...] gcc -DL2SIZE=4194304 -I/sw/src/fink.build/atlas-3.8.1-1/bld/include -I/ sw/s rc/fink.build/atlas-3.8.1-1/bld/../ATLAS//include -I/sw/src/ fink.build/atla s-3.8.1-1/bld/../ATLAS//include/contrib -DAdd_ -DF77_INTEGER=int - DStringSu nStyle -DATL_OS_OSX -DATL_ARCH_PPCG4 -DATL_CPUMHZ=1499 - DATL_AltiVec -DATL_ GAS_PPC -DATL_UCLEANM -DATL_UCLEANN -DATL_UCLEANK -O3 -maltivec - mabi=alti vec -mcpu=7400 -mtune=7400 -no-cpp-precomp -faltivec -m32 -c ATL_cupMBmm0_1 _0_b0.c gcc: unrecognized option '-no-cpp-precomp' ATL_cupMBmm0_1_0_b0.c:82:1: warning: ATL_AltiVec redefined command-line: warning: this is the location of the previous definition ATL_cupMBmm0_1_0_b0.c: In function 'ATL_mmcu': ATL_cupMBmm0_1_0_b0.c:131: error: can't convert value to a vector ATL_cupMBmm0_1_0_b0.c: In function 'ATL_cupMBmm0_1_0_b0': ATL_cupMBmm0_1_0_b0.c:212: error: can't convert value to a vector ATL_cupMBmm0_1_0_b0.c:219: warning: use of 'long' in AltiVec types is deprecated; use 'int' ATL_cupMBmm0_1_0_b0.c:219: error: can't convert between vector values of different size make[8]: *** [ATL_cupMBmm0_1_0_b0.o] Error 1 make[7]: *** [ccleanuplib] Error 2 make[6]: *** [clib] Error 2 make[5]: *** [cmmlib] Error 2 make[4]: *** [cinstall] Error 2 make[3]: *** [install] Error 2 make[2]: *** [IRunMMDef] Error 2 [...] Is this a known problem on ppc (10.5) or shall I start a new thread? Ben - Check out the new SourceForge.net Marketplace. It's the best place to buy or sell services for just about anything Open Source. http://ad.doubleclick.net/clk;164216239;13503038;w?http://sf.net/marketplace ___ Fink-users mailing list Fink-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-users
Re: [Fink-users] Failed: phase compiling: octave-atlas-3.0.0-3 failed
On 31 Mar 2008, at 15:55, Ben Abbott wrote: Back the the problem with Octave-atlas, I tried to build on my ppc based Mac, but the build of atlas failed. Is this a known problem on ppc (10.5) or shall I start a new thread? Not on ppc _ on G4. Sure _ there are threads about it; cf also last sentence of DescPort. JF Mertens - Check out the new SourceForge.net Marketplace. It's the best place to buy or sell services for just about anything Open Source. http://ad.doubleclick.net/clk;164216239;13503038;w?http://sf.net/marketplace ___ Fink-users mailing list Fink-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-users
Re: [Fink-users] Failed: phase compiling: octave-atlas-3.0.0-3 failed
On Mar 27, 2008, at 1:44 PM, Yann Clénet wrote: I believe this problem has been fixed in Octave's current developer sources, which I'm currently running. The problem is related to a change in how gfortran returns values of complex functions. If you edit octave.info and remove the line make check, it should build and install. If my inference is correct, the following should reproduce the crash N = 97; mldivide (2*eye(N) + circshift (eye (N), 1), ones (N, 1)); For N 97 it should work (if you build without make check, please confirm). I'm surprised this error is resulting with the atlas version. When did you build altas? Perhaps you might try fink rebuild atlas atlas-shlibs before building octave-atlas. That way you can be sure that blas/lapack/octave are each compiled in a consistent manner. Ben I have tried your fink rebuild atlas atlas-shlibs (with no error) and then tried again to install octave-atlas, but got the same error as before... But after suppressing make check in the /sw/fink/10.4/unstable/ main/finkinfo/sci/octave.info file, the installation of octave-atlas worked fine. Thank you ! Yann Yann, Any chance you tried to build octave, with out altas? If so what was the result? Ben - Check out the new SourceForge.net Marketplace. It's the best place to buy or sell services for just about anything Open Source. http://ad.doubleclick.net/clk;164216239;13503038;w?http://sf.net/marketplace ___ Fink-users mailing list Fink-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-users
Re: [Fink-users] Failed: phase compiling: octave-atlas- 3.0.0-3 failed
Alexander Hansen alexanderk.hansen at gmail.com writes: It might be of interest to try the suitesparse on the tracker (I'm working my way to it). I can't check this myself because atlas won't build on my machine, unfortunately. Alex, Sorry for the delay, I just noticed your follow up. I tried to build octave-atlas using the SuiteSpares 3.1, and it failed just as Yann's build did. Ben - Check out the new SourceForge.net Marketplace. It's the best place to buy or sell services for just about anything Open Source. http://ad.doubleclick.net/clk;164216239;13503038;w?http://sf.net/marketplace ___ Fink-users mailing list Fink-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-users
Re: [Fink-users] Failed: phase compiling: octave-atlas-3.0.0-3 failed
On Mar 27, 2008, at 11:57 PM, Jean-Francois Mertens wrote: Ben Abbott wrote: Yann Clénet yann.clenet at free.fr writes: I have now a problem installing with fink the package octave-atlas on my new MacBook Pro with preinstalled Leopard 10.5.2 (cf below). Yann The problem is related to a change in how gfortran returns values of complex functions. I'm surprised this error is resulting with the atlas version. When did you build altas? Rather : version and revision ? Indeed, it should not occur, and does not here (with a stock octave-atlas) If you edit octave.info and remove the line make check, Was done by the maintainer now... (I prefer to have signals of problems than to hide them, but most users probably don't...) N = 97; mldivide (2*eye(N) + circshift (eye (N), 1), ones (N, 1)); This too works perfectly here with a stock octave-atlas. Segfaults are hard to diagnose (remember the last one about octave-forge, Ben ..) And BTW, I see the failed test (/sw/share/octave/3.0.0/m/sparse/pcg.m) is in the sparse directory, and contains several refs to sparsity; suitesparse might not be involved ?? JF It is possible. If Yann is up to the task of helping isolate the problem, we can have him run test pcg verbose That should tell us what test is actually failing. I suspect the left- divide because that problem has already been identified. However, I'm confused as to why Yann is encountering it ... unless he is using Octave's developer sources form Feb to the mid-Mar. Ben - Check out the new SourceForge.net Marketplace. It's the best place to buy or sell services for just about anything Open Source. http://ad.doubleclick.net/clk;164216239;13503038;w?http://sf.net/marketplace ___ Fink-users mailing list Fink-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-users
Re: [Fink-users] Failed: phase compiling: octave-atlas-3.0.0-3 failed
Yann Clénet yann.clenet at free.fr writes: I have now a problem installing with fink the package octave-atlas on my new MacBook Pro with preinstalled Leopard 10.5.2 (cf below). Anyone has any idea ??? Thank you in advance Yann I believe this problem has been fixed in Octave's current developer sources, which I'm currently running. The problem is related to a change in how gfortran returns values of complex functions. If you edit octave.info and remove the line make check, it should build and install. If my inference is correct, the following should reproduce the crash N = 97; mldivide (2*eye(N) + circshift (eye (N), 1), ones (N, 1)); For N 97 it should work (if you build without make check, please confirm). I'm surprised this error is resulting with the atlas version. When did you build altas? Perhaps you might try fink rebuild atlas atlas-shlibs before building octave-atlas. That way you can be sure that blas/lapack/octave are each compiled in a consistent manner. Ben - Check out the new SourceForge.net Marketplace. It's the best place to buy or sell services for just about anything Open Source. http://ad.doubleclick.net/clk;164216239;13503038;w?http://sf.net/marketplace ___ Fink-users mailing list Fink-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-users
Re: [Fink-users] Failed: phase compiling: octave-atlas-3.0.0-3 failed
I have tried your fink rebuild atlas atlas-shlibs (with no error) and then tried again to install octave-atlas, but got the same error as before... But after suppressing make check in the /sw/fink/10.4/unstable/main/ finkinfo/sci/octave.info file, the installation of octave-atlas worked fine. Thank you ! Yann I believe this problem has been fixed in Octave's current developer sources, which I'm currently running. The problem is related to a change in how gfortran returns values of complex functions. If you edit octave.info and remove the line make check, it should build and install. If my inference is correct, the following should reproduce the crash N = 97; mldivide (2*eye(N) + circshift (eye (N), 1), ones (N, 1)); For N 97 it should work (if you build without make check, please confirm). I'm surprised this error is resulting with the atlas version. When did you build altas? Perhaps you might try fink rebuild atlas atlas-shlibs before building octave-atlas. That way you can be sure that blas/lapack/octave are each compiled in a consistent manner. Ben - Check out the new SourceForge.net Marketplace. It's the best place to buy or sell services for just about anything Open Source. http://ad.doubleclick.net/clk;164216239;13503038;w?http://sf.net/marketplace ___ Fink-users mailing list Fink-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-users
Re: [Fink-users] Failed: phase compiling: octave-atlas-3.0.0-3 failed
On Mar 27, 2008, at 1:44 PM, Yann Clénet wrote: I believe this problem has been fixed in Octave's current developer sources, which I'm currently running. The problem is related to a change in how gfortran returns values of complex functions. If you edit octave.info and remove the line make check, it should build and install. If my inference is correct, the following should reproduce the crash N = 97; mldivide (2*eye(N) + circshift (eye (N), 1), ones (N, 1)); For N 97 it should work (if you build without make check, please confirm). I'm surprised this error is resulting with the atlas version. When did you build altas? Perhaps you might try fink rebuild atlas atlas-shlibs before building octave-atlas. That way you can be sure that blas/lapack/octave are each compiled in a consistent manner. Ben I have tried your fink rebuild atlas atlas-shlibs (with no error) and then tried again to install octave-atlas, but got the same error as before... But after suppressing make check in the /sw/fink/10.4/unstable/ main/finkinfo/sci/octave.info file, the installation of octave-atlas worked fine. Thank you ! Yann It is likely that a crash will still occur with N = 97; mldivide (2*eye(N) + circshift (eye (N), 1), ones (N, 1)); The next release of Octave will include a fix. Ben - Check out the new SourceForge.net Marketplace. It's the best place to buy or sell services for just about anything Open Source. http://ad.doubleclick.net/clk;164216239;13503038;w?http://sf.net/marketplace ___ Fink-users mailing list Fink-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-users
Re: [Fink-users] Failed: phase compiling: octave-atlas-3.0.0-3 failed
Ben Abbott wrote: Yann Clénet yann.clenet at free.fr writes: I have now a problem installing with fink the package octave-atlas on my new MacBook Pro with preinstalled Leopard 10.5.2 (cf below). Yann The problem is related to a change in how gfortran returns values of complex functions. I'm surprised this error is resulting with the atlas version. When did you build altas? Rather : version and revision ? Indeed, it should not occur, and does not here (with a stock octave-atlas) If you edit octave.info and remove the line make check, Was done by the maintainer now... (I prefer to have signals of problems than to hide them, but most users probably don't...) N = 97; mldivide (2*eye(N) + circshift (eye (N), 1), ones (N, 1)); This too works perfectly here with a stock octave-atlas. Segfaults are hard to diagnose (remember the last one about octave-forge, Ben ..) And BTW, I see the failed test (/sw/share/octave/3.0.0/m/sparse/pcg.m) is in the sparse directory, and contains several refs to sparsity; suitesparse might not be involved ?? JF - Check out the new SourceForge.net Marketplace. It's the best place to buy or sell services for just about anything Open Source. http://ad.doubleclick.net/clk;164216239;13503038;w?http://sf.net/marketplace ___ Fink-users mailing list Fink-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-users
Re: [Fink-users] Failed: phase compiling: octave-atlas-3.0.0-3 failed
On Mar 27, 2008, at 11:57 PM, Jean-Francois Mertens wrote: Ben Abbott wrote: Yann Clénet yann.clenet at free.fr writes: I have now a problem installing with fink the package octave-atlas on my new MacBook Pro with preinstalled Leopard 10.5.2 (cf below). Yann The problem is related to a change in how gfortran returns values of complex functions. I'm surprised this error is resulting with the atlas version. When did you build altas? Rather : version and revision ? Indeed, it should not occur, and does not here (with a stock octave-atlas) If you edit octave.info and remove the line make check, Was done by the maintainer now... (I prefer to have signals of problems than to hide them, but most users probably don't...) N = 97; mldivide (2*eye(N) + circshift (eye (N), 1), ones (N, 1)); This too works perfectly here with a stock octave-atlas. Segfaults are hard to diagnose (remember the last one about octave-forge, Ben ..) And BTW, I see the failed test (/sw/share/octave/3.0.0/m/sparse/pcg.m) is in the sparse directory, and contains several refs to sparsity; suitesparse might not be involved ?? JF make test is still available under maintainer mode for those who want it. It might be of interest to try the suitesparse on the tracker (I'm working my way to it). I can't check this myself because atlas won't build on my machine, unfortunately. - Check out the new SourceForge.net Marketplace. It's the best place to buy or sell services for just about anything Open Source. http://ad.doubleclick.net/clk;164216239;13503038;w?http://sf.net/marketplace ___ Fink-users mailing list Fink-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-users
[Fink-users] Failed: phase compiling: octave-atlas-3.0.0-3 failed
I have now a problem installing with fink the package octave-atlas on my new MacBook Pro with preinstalled Leopard 10.5.2 (cf below). Anyone has any idea ??? Thank you in advance Yann -- Octave successfully built. Now choose from the following: ./run-octave- to run in place to test before installing make check - to run the tests make install- to install make check make -f octMakefile check make -C test check ./build_sparse_tests.sh ../run-octave --norc --silent --no-history ./fntests.m . Integrated test scripts: src/DLD-FUNCTIONS/bsxfun.cc PASS 55/55 src/DLD-FUNCTIONS/cellfun.cc ... PASS 31/31 src/DLD-FUNCTIONS/conv2.cc . PASS1/1 src/DLD-FUNCTIONS/dispatch.cc .. PASS 13/13 src/DLD-FUNCTIONS/fft.cc ... PASS9/9 src/DLD-FUNCTIONS/fsolve.cc PASS4/4 src/DLD-FUNCTIONS/luinc.cc . PASS2/2 src/DLD-FUNCTIONS/matrix_type.cc ... PASS 51/51 src/DLD-FUNCTIONS/rand.cc .. PASS 57/57 src/DLD-FUNCTIONS/regexp.cc PASS 81/81 src/DLD-FUNCTIONS/spkron.cc PASS2/2 src/DLD-FUNCTIONS/spqr.cc .. PASS 14/14 src/DLD-FUNCTIONS/tsearch.cc ... PASS6/6 src/data.cc PASS 20/20 src/ov-fcn-handle.cc ... PASS3/3 src/ov-struct.cc ... PASS 15/15 src/pt-idx.cc .. PASS5/5 src/strfns.cc .. PASS 22/22 src/syscalls.cc PASS1/1 liboctave/CMatrix.cc ... PASS6/6 liboctave/dMatrix.cc ... PASS6/6 scripts/audio/wavwrite.m ... PASS3/3 scripts/elfun/acosd.m .. PASS3/3 scripts/elfun/acotd.m .. PASS3/3 scripts/elfun/acscd.m .. PASS3/3 scripts/elfun/asecd.m .. PASS3/3 scripts/elfun/asind.m .. PASS3/3 scripts/elfun/atand.m .. PASS3/3 scripts/elfun/cosd.m ... PASS5/5 scripts/elfun/cotd.m ... PASS5/5 scripts/elfun/cscd.m ... PASS5/5 scripts/elfun/secd.m ... PASS5/5 scripts/elfun/sind.m ... PASS5/5 scripts/elfun/tand.m ... PASS5/5 scripts/general/__isequal__.m .. PASS 26/26 scripts/general/accumarray.m ... PASS 11/11 scripts/general/arrayfun.m . PASS1/1 scripts/general/bitcmp.m ... PASS 15/15 scripts/general/blkdiag.m .. PASS8/8 scripts/general/cell2mat.m . PASS2/2 scripts/general/cplxpair.m . PASS 13/13 scripts/general/cumtrapz.m . PASS6/6 scripts/general/deal.m . PASS2/2 scripts/general/interp1.m .. PASS 144/144 scripts/general/interp2.m .. PASS6/6 scripts/general/interp3.m .. PASS1/1 scripts/general/interpft.m . PASS5/5 scripts/general/issymmetric.m .. PASS 12/12 scripts/general/lookup.m ... PASS 13/13 scripts/general/mod.m .. PASS 18/18 scripts/general/nthroot.m .. PASS3/3 scripts/general/polyarea.m . PASS4/4 scripts/general/repmat.m ... PASS 16/16 scripts/general/structfun.m PASS1/1 scripts/general/sub2ind.m .. PASS 24/24 scripts/general/trapz.m PASS6/6 scripts/geometry/convhull.m PASS1/1 scripts/geometry/delaunay.m PASS1/1 scripts/geometry/delaunay3.m ... PASS1/1 scripts/geometry/dsearch.m . PASS2/2 scripts/geometry/dsearchn.m PASS
