Re: Diffusion coefficient with spline interpolation

2017-08-09 Thread Michael J. Waters
Hi Clara, Is your spline function returning a numpy array? I think what is happening is that FiPy is seeing it as a tensor diffusion coefficient rather than just a list of the values throughout your simulation. I'm a little rusty with FiPy these days, but I think you could so something like

Re: Memory leak using trilinos

2017-06-20 Thread Michael J. Waters
Hi Zhekai Deng, I had a similar problem. In the end, I just created check point files and restarted frequently. I did find that garbage collecting helped slow the leak and, interestingly, also sped up code execution for me. Best, -Mike On 6/20/17 10:39 AM, Zhekai Deng wrote: HI All, I

Re: python 3

2017-06-07 Thread Michael J. Waters
Hi Daniel, So FiPy running in Python 3 won't have MPI based parallelism until PyTrilinos supports Python 3? Best, -Mike On 6/7/17 2:01 PM, Daniel Wheeler wrote: > Hi Nils, > > FiPy is not written for Python 3, but it does work after applying > 2to3. However, only the Scipy solvers are then

Re: python 3

2017-06-07 Thread Michael J. Waters
either. > >> On Jun 7, 2017, at 3:08 PM, Michael J. Waters <waters.mik...@gmail.com> >> wrote: >> >> Hi Daniel, >> >> So FiPy running in Python 3 won't have MPI based parallelism until >> PyTrilinos supports Python 3? >> >> Best, >

Re: Viewer Feature Request / Clarification

2018-03-20 Thread Michael J. Waters
, at 12:48 PM, Michael J. Waters <waters.mik...@gmail.com> wrote: Hi Kevin, If you are using the Matplotlib Viewers, you could just skip the Viewers and use Matplotlib directly. it's not hard to simply setup subplots using Matplotlib and it should be easy to get them to update the figure a

Re: Viewer Feature Request / Clarification

2018-03-19 Thread Michael J. Waters
Hi Kevin, If you are using the Matplotlib Viewers, you could just skip the Viewers and use Matplotlib directly.  it's not hard to simply setup subplots using Matplotlib and it should be easy to get them to update the figure at each time step. Best, -Mike On 3/19/18 11:35 AM, Kevin