Hi everyone,

I just want to add my thoughts along the line of Plamen's last comments. 

I've been following with great interest some of the exchanges between FIS 
members. Unfortunatly as a business person I do not have the time nor the 
knowledge to participate actively to such deep philosophical/scientific issues 
which are undoubtedly of great importance in order to go beyond current 
mechanistic approaches to life. However I just want to point out a few things. 
We have, in my view, different (somewhat opposit) constraints to satisfy: (1) 
Find one or more theroretical holistic frameworks that at the same time must 
support a thourough (reductionist) analysis if we do not want to remain purely 
metaphysical ; (2) define some computational/experimental schemes to verify the 
scope/contexts of the theories'  validity; (3) create value.

I'm a down-to-earth person and I'm certain that the EEC is concerned by all 
these issues -including value and wealth/job creation (sorry to speak about 
such mercantile issues). In the long run, I'm affraid that the EEC will not 
fund research that does'nt cover the three.   In short, I think that we have to 
come to a point in the futur where a computational framework will have to be 
concieved and materialized by, say, a C++ code. Hopefully this code will 
contribute to fundamental research, pharmaceutical research, health and 
education...   

Now, to finish on a more "philosophical" note, perhaps we should not be too 
much concerned with the perfect matching between natural language and knowledge 
in general (especially when space-time is involved).  Zeno's paradox, which I'm 
sure is known to everyone,  illustrates the case where predictions based on 
logic and purely descriptive (natural language) terms is inadequate to overcome 
certain paradoxes. We had to wait for the studies of convergent infinite series 
to predict that Achilles does indeed overrun the turtoise at some space-time 
point (as every ancient Greek could actually acknowledge without being able to 
prove it). Once the math had been worked out we could then resort back to 
natural language (as I just did)  to explain in a "fuzzy way" why...

The last part of my mail may miss the whole point of the recent exchanges and I 
apologize if this is the case. However, I believe that the first part needs to 
be considered. 

My best to all

Pridi          

   
  ----- Original Message ----- 
  From: Dr. Plamen L. Simeonov 
  To: Joseph Brenner 
  Cc: fis 
  Sent: Wednesday, May 25, 2011 8:26 AM
  Subject: Re: [Fis] The Key to Time. Naturalizing Matsuno


  Dear Joseph, Koichiro and FIS colleagues,

  I have been observing your discussion on biological time for a while now.
  May I make a suggestion with your permission.

  I think that Koichiro raised an important issue, in particular as 
contribution to our INBIOSA project (www.inbiosa.eu) 
  that deserves more elaborate attention. Therefore, I suggest to move the 
discussion from the predominant philosophical 
  realm (exchange of opinions) to the more pragmatical one. 

  In INBIOSA we are interested in initiating the development of a new theory of 
(internalist) biological time supported by both theoretical 
  insights/models and experimental evidence. So, why don't you propose specific 
examples in support of each one's argument
  (perhaps in other living systems except cyanobacteria) along with 1-2 
corollaries (extrapolations/predictions) of these arguments
  and methods to prove them by experiments. We can get closer to the truth 
within a joint project proposal (of disjoint viewpoints) 
  defined to clear up the horizon. We have provided such facilities for 
proposal submission in INBIOSA and I even have 2 specific 
  EC research programmes that can be addressed to fund this kind of research. 
What do you think? 

  I invite the ones who are interested in this to let me know.

  Thank you for your attention,

  Best wishes!

  Plamen


  ___ ___ ___

  Dr. Plamen L. Simeonov
  landline:   +49.30.38.10.11.25
  fax/ums:   +49.30.48.49.88.26.4
  mobile:     +49.15.22.89.02.26.4
  email:     pla...@simeio.org
  URL:      www.simeio.org




  On Tue, May 24, 2011 at 11:59 PM, Joseph Brenner <joe.bren...@bluewin.ch> 
wrote:

    Dear Koichiro, 



    I share in part Loet’s frustration in trying to understand your complex 
constructions. Please let me propose, therefore three strategies that might be 
helpful in naturalizing them, that is, converting them into concepts that fit 
the science with which we are, or can become, more familiar.



    1. Generalization. 

    If your approach to the time of cyanobacteria is a valid one, it should 
apply generally. I, my wife and the system I-and-my-wife must also generate 
specific times, as I think we do.



    2. Relating Reality and Appearance.

    In my extension of logic to complex systems, reality and appearance are 
related contradictorially: there is some reality to appearance and some 
appearance to reality. Thus, if as you state the “flow of time” is a 
“representation” or a “metaphor”, I would say it is primarily an appearance, 
albeit a very convincing one, whereas the “material flow-through” is primarily 
a reality. In a separate process, we may relate “flow of time on a global 
scale” to tenses, but what is important to me is that the two flows are related 
as appearance and reality (“time as time retaining its identity”).



    This interpretation helps me, at least, clarify the first part of your 
hermetic sentence:



    Both information and time, once set free from the read-into flow of time,  
are common in sharing the similar materialistic and energetic context/ in 
incorporating the transitive verbs into themselves as holding the contrast 
between the direct and the indirect object of a verb, that is to say, between a 
message and its dative.



    Time, here, and please correct me if mistaken, is the real “energetic” time 
that is generated by real systems. I would welcome your comment on my 
formulation of this point in my earlier note. This time winds up being 
interpreted (for evolutionary reasons) as “read-into flow of time” and from 
which it needs to be distinguished. This reading answers Loet’s first 
objection: time is not a construct of language, but “flow-of-time” can be 
related to linguistic structures. I see both information-as-process and 
time-as-process as probability distributions, but we should come back to this. 



    As to Loet’s second objection, Koichiro, I think you weakened your argument 
by reference to something that looks unreal, namely, “original cyclic motions”. 
If you had simply said “observable celestial motions”, the contrast with 
incorrect representations of them (e.g., as invariant) I think would be clear.  



    3. Avoiding Linguistic Structures.

    The most difficult bit to “naturalize”, as Loet also felt, is your use of 
linguistic structures. Such structures, when used to attempt to explicate the 
flow of information in real systems, which is a real, energetic process, become 
part of the problem. Real energetic phenomena do not spend their effort and 
time (J) on incorporating transitive verbs (into what?), or holding contrasts 
between direct and indirect objects (how?). 

    Thus when you write



    The underlying issue is how we can construct the flow of time from the 
tenses. When the constant update of the present perfect tense in the present 
progressive tense is referred to in the finished record,  we can perceive the 
flow of time as driven by the transitive verb “update” in the present tense, 
though only in retrospect.



    you have mentioned together two separate issues that I feel need to be 
unpacked: “construction of the flow of time” and “perception of the flow of 
time”.



    If we agree that “flow of time” is just a metaphor, as noted above, its 
construction from linguistics is to me a secondary issue. Perception of the 
flow of time, however, is an absolutely essential concept that I have never 
seen addressed adequately outside the cosmology of Lusanna and Pauri. 
Perception is a real energetic process that is driven by our underlying 
dynamics, as primarily 3D creatures in a 4D universe, not by verbs and their 
objects. What are “the message” (accusative, direct object) and “to the 
message” (dative, indirect object) doing in the first citation in 2. above?



    4. My final strategy is simply a suggestion, but perhaps it helps to 
explain my critique of the use you make of tense: there should be some relation 
made to space and what Lupasco considered the real, contradictorial relation 
between time and space. I think behind Loet’s reference to time as possibly a 
frequency distribution is a similar desire to move away from linguistic 
structures to real structures. Thus Loet’s designation of time as something 
that can be communicated fits with the idea of time as something real, always 
associated with physical entities. Going even farther out on a limb, we may 
consider time as discussed above and information as two perspectives on the 
same physical process. 



    I and I am sure Loet, as well as others would look forward to your replies.



    Best wishes,



    Joseph





      ----- Original Message ----- 
      From: Loet Leydesdorff 
      To: 'Koichiro Matsuno' ; 'Joseph Brenner' ; 'fis' 
      Sent: Tuesday, May 24, 2011 7:42 AM
      Subject: RE: [Fis] replies to several. The Key to Time


      Dear Koichiro and colleagues, 



      Let me try to raise some questions. I find the language sometimes 
difficult. Examples might help!



      Ø  The underlying issue is how can we construct the flow of time from the 
tenses. 



      In other words: time is a construct of language? 



      When the constant update of the present perfect tense in the present 
progressive tense is referred to in the finished record,  we can perceive the 
flow of time as driven by the transitive verb “update” in the present tense, 
though only in retrospect. 



      This is a description of this construction process: how it works.



      This updated version of the flow of time in retrospect exhibits a marked 
contrast to the flow of time riding on the intransitive verb “flow” in the 
present tense unconditionally, the latter of which is common to the standard 
practice of physical sciences even including relativity.  The occurrence of the 
perfect tense is due to the act of measurement of material origin 
distinguishing between the before and after its own act, while its frequent 
update in the progressive tense will be necessitated so as to meet various 
conservation laws such as  material or energy flow continuity to be registered 
in the record, e. g., not to leave the failure in meeting the flow continuity 
behind. The KaiC hexamers of cyanobacteria are involved in the constant update 
of the prefect tense in the progressive tense. 



      The “various conservation laws” are not a construct of language but 
constraints on constructions in language? Have they always been these 
constraints or only since the scientific revolution of the 17th century?



      Ø   The flow of time read by the externalist, say, by Ptolemy-Newton, 
into an invariant cyclic motion of the stellar configuration displayed over the 
sky is enigmatic in relating a cyclic movement of physical bodies to a linear 
movement of something else called time. A less ambitious approach could be to 
relate a linear movement of physical bodies to the linear movement of time even 
if the latter is an anthropocentric artifact, unless the artifact interferes 
with the physical bodies. The flow of time read-into by the physicist implies 
no linear flow of time in the absence of the physicist as leaving only the 
original cyclic motions behind. 



      The original cyclic motions predate the reading. They are given? By whom 
and in which language? (By God in the revelation of his creation, that is, in 
the Bible?)



      That must be quite stifling.  In contrast, appreciating the material 
through-flow keeping the class identity of the supporting material aggregate as 
being represented as the flow of time comes to imply that the through-flow is 
informational in that it presumes both the message (e.g., the subunits to be 
exchanged) and its dative (e.g., the aggregate processing their exchanges). 
Both information and time, once set free from the read-into flow of time,  are 
common in sharing the similar materialistic and energetic context in 
incorporating the transitive verbs into themselves as holding the contrast 
between the direct and the indirect object of a verb, that is to say, between a 
message and its dative. Despite that, I am not quite sure at this moment 
whether this synthetic view would merely be one step backward for the sake of 
the likely two steps forward to come. 



      Is the dative of a message different from the third case in the 
declension? Please, explain what you mean and provide perhaps an example.



      “Both information and time”…? If “information” can be defined in terms of 
a probability distribution, would “time” be definable as a frequency 
distribution? Is that perhaps how I can understand these two to be juxtaposed 
in this sentence? 

      (I would be inclined to consider time as “what is being communicated” 
when frequencies are communicated.)



      Best wishes, 

      Loet




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