subject:"\\\[package \\\- head\\\-armv6\\\-default\\\]\\\[biology\\\/seqtools\\\] Failed for seqtools\\\-4.41.1 in configure"

[package - head-armv6-default][biology/seqtools] Failed for seqtools-4.41.1 in configure

2016-04-21 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: p...@freebsd.org
Last committer: m...@freebsd.org
Ident:  $FreeBSD: head/biology/seqtools/Makefile 412344 2016-04-01 
13:29:15Z mat $
Log URL:
http://beefy8.nyi.freebsd.org/data/head-armv6-default/p413605_s298221/logs/seqtools-4.41.1.log
Build URL:  
http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default=p413605_s298221
Log:

>> Building biology/seqtools
build started at Thu Apr 21 22:38:21 UTC 2016
port directory: /usr/ports/biology/seqtools
building for: FreeBSD head-armv6-default-job-20 11.0-CURRENT FreeBSD 
11.0-CURRENT r298221 arm
maintained by: p...@freebsd.org
Makefile ident:  $FreeBSD: head/biology/seqtools/Makefile 412344 2016-04-01 
13:29:15Z mat $
Poudriere version: 3.1.12
Host OSVERSION: 1100102
Jail OSVERSION: 1100105




!!! Jail is newer than host. (Jail: 1100105, Host: 1100102) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_p=armv6
UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
UNAME_v=FreeBSD 11.0-CURRENT r298221
UNAME_r=11.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=armv6
LINUX_OSRELEASE=2.6.32
SAVED_TERM=screen
QEMU_EMULATING=1
MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=seqtools-4.41.1
OSREL=11.0
_OSRELEASE=11.0-CURRENT
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=24
PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool
MASTERNAME=head-armv6-default
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.12
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100105
---End Environment---

---Begin OPTIONS List---
===> The following configuration options are available for seqtools-4.41.1:
 DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---

--CONFIGURE_ARGS--
--prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqtools/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqtools/work  
HOME=/wrkdirs/usr/ports/biology/seqtools/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" 
AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" 
GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" 
OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" 
RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" 
SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" 
CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqtools/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqtools/work  
HOME=/wrkdirs/usr/ports/biology/seqtools/work TMPDIR="/tmp" NO_PIE=yes 
WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES 
ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" 
AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" 
GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" 
OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" 
RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" 
SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local  
LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="gcc48" CFLAGS="-O2 -pipe 
-mfloat-abi=softfp  -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc48 
-fno-strict-aliasing"  CPP="cpp48" CPPFLAGS=""  LDFLAGS=" -L/usr/local/lib 
-lexecinfo -lcurl -lsqlite3 -lm -Wl,-rpath=/usr/local/lib/gcc48 
-L/usr/local/lib/gcc48" LIBS=""  CXX="g++48" CXXFLAGS=
 "-O2 -pipe -mfloat-abi=softfp -I/usr/local/include 
-Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing  
-Wl,-rpath=/usr/local/lib/gcc48"  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
GTK2_VERSION="2.10.0"
GTK3_VERSION="3.0.0"
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/seqtools"
EXAMPLESDIR="share/examples/seqtools"
DATADIR="share/seqtools"
WWWDIR="www/seqtools"
ETCDIR="etc/seqtools"
--End PLIST_SUB--

[package - head-armv6-default][biology/seqtools] Failed for seqtools-4.41.1 in configure

2016-03-26 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: p...@freebsd.org
Last committer: p...@freebsd.org
Ident:  $FreeBSD: head/biology/seqtools/Makefile 411109 2016-03-14 
19:40:34Z pi $
Log URL:
http://beefy8.nyi.freebsd.org/data/head-armv6-default/p411721_s297210/logs/seqtools-4.41.1.log
Build URL:  
http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default=p411721_s297210
Log:

>> Building biology/seqtools
build started at Sun Mar 27 03:27:47 UTC 2016
port directory: /usr/ports/biology/seqtools
building for: FreeBSD head-armv6-default-job-08 11.0-CURRENT FreeBSD 
11.0-CURRENT r297210 arm
maintained by: p...@freebsd.org
Makefile ident:  $FreeBSD: head/biology/seqtools/Makefile 411109 2016-03-14 
19:40:34Z pi $
Poudriere version: 3.1.12
Host OSVERSION: 1100100
Jail OSVERSION: 1100104




!!! Jail is newer than host. (Jail: 1100104, Host: 1100100) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_p=armv6
UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
UNAME_v=FreeBSD 11.0-CURRENT r297210
UNAME_r=11.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=armv6
LINUX_OSRELEASE=2.6.32
SAVED_TERM=screen
QEMU_EMULATING=1
MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=seqtools-4.41.1
OSREL=11.0
_OSRELEASE=11.0-CURRENT
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=24
PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool
MASTERNAME=head-armv6-default
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.12
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100104
---End Environment---

---Begin OPTIONS List---
===> The following configuration options are available for seqtools-4.41.1:
 DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---

--CONFIGURE_ARGS--
--prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqtools/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqtools/work  
HOME=/wrkdirs/usr/ports/biology/seqtools/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" 
AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" 
GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" 
OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" 
RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" 
SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" 
CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqtools/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqtools/work  
HOME=/wrkdirs/usr/ports/biology/seqtools/work TMPDIR="/tmp" NO_PIE=yes 
WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES 
ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" 
AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" 
GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" 
OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" 
RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" 
SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local  
LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="gcc48" CFLAGS="-O2 -pipe 
-mfloat-abi=softfp  -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc48 
-fno-strict-aliasing"  CPP="cpp48" CPPFLAGS=""  LDFLAGS=" -L/usr/local/lib 
-lexecinfo -lcurl -lsqlite3 -lm -Wl,-rpath=/usr/local/lib/gcc48 
-L/usr/local/lib/gcc48" LIBS=""  CXX="g++48" CXXFLAGS=
 "-O2 -pipe -mfloat-abi=softfp -I/usr/local/include 
-Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing  
-Wl,-rpath=/usr/local/lib/gcc48"  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
GTK2_VERSION="2.10.0"
GTK3_VERSION="3.0.0"
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/seqtools"
EXAMPLESDIR="share/examples/seqtools"
DATADIR="share/seqtools"
WWWDIR="www/seqtools"
ETCDIR="etc/seqtools"
--End PLIST_SUB--

[package - head-armv6-default][biology/seqtools] Failed for seqtools-4.41.1 in configure

[package - head-armv6-default][biology/seqtools] Failed for seqtools-4.41.1 in configure

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