[exp - 103i386-default-build-as-user][biology/py-biopython] Failed for py27-biopython-1.66 in fetch
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: mauri...@arareko.net Last committer: w...@freebsd.org Ident: $FreeBSD: head/biology/py-biopython/Makefile 413489 2016-04-17 03:55:01Z wen $ Log URL: http://package19.nyi.freebsd.org/data/103i386-default-build-as-user/413964/logs/py27-biopython-1.66.log Build URL: http://package19.nyi.freebsd.org/build.html?mastername=103i386-default-build-as-user&build=413964 Log: >> Building biology/py-biopython build started at Mon Apr 25 14:46:49 UTC 2016 port directory: /usr/ports/biology/py-biopython building for: FreeBSD 103i386-default-build-as-user-job-16 10.3-RELEASE FreeBSD 10.3-RELEASE i386 maintained by: mauri...@arareko.net Makefile ident: $FreeBSD: head/biology/py-biopython/Makefile 413489 2016-04-17 03:55:01Z wen $ Poudriere version: 3.1.12 Host OSVERSION: 1100102 Jail OSVERSION: 1003000 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 UNAME_v=FreeBSD 10.3-RELEASE UNAME_r=10.3-RELEASE BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 OPSYS=FreeBSD ARCH=i386 LINUX_OSRELEASE=2.6.32 SAVED_TERM= MASTERMNT=/poudriere/data/.m/103i386-default-build-as-user/ref FORCE_PACKAGE=yes PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ POUDRIERE_BUILD_TYPE=bulk PKGNAME=py27-biopython-1.66 OSREL=10.3 _OSRELEASE=10.3-RELEASE PYTHONBASE=/usr/local OLDPWD=/ _SMP_CPUS=32 PWD=/poudriere/data/.m/103i386-default-build-as-user/ref/.p/pool MASTERNAME=103i386-default-build-as-user SCRIPTPREFIX=/usr/local/share/poudriere _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun USER=root HOME=/root POUDRIERE_VERSION=3.1.12 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh CONFIGURE_MAX_CMD_LEN=262144 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes _JAVA_OS_LIST_REGEXP=native\|linux OSVERSION=1003000 ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for py27-biopython-1.66: REPORTLAB=on: PDF support in Bio.Graphics module ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-biopython/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-biopython/work HOME=/wrkdirs/usr/ports/biology/py-biopython/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-biopython/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-biopython/work HOME=/wrkdirs/usr/ports/biology/py-biopython/work TMPDIR="/tmp" NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd10 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_VER=2.7 PYTHON_VERSION=python2.7 OSREL=10.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/biopython" EXAMPLESDIR="share/examples/biopython" DATADIR="share/biopython" WWWDIR="www/biopython" ETCDIR="etc/biopython" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/biopython DOCSDIR=/usr/local/share/doc/biopython EXAMPLESDIR=/usr/local/share/examples/biopython WWWDIR=/usr/local/www/biopython ETCDIR=/usr/local/etc/biopython --End SUB_LIST-- ---Begin make.conf--- MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles /usr/local/etc/poudriere.d/make.conf WITH_PKGNG=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- === === === ===> py27-biopython-1.66 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.7.2.txz [103i386-default-build-as-user-job-16] Installing pkg-1.7.2... [103i386-default-build-as-user-job-16] Extracting pkg-1.7.2: .. done ===> py27-biopython-1.66 dep
[exp - 103i386-default-build-as-user][biology/py-biopython] Failed for py27-biopython-1.66 in fetch
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: mauri...@arareko.net Last committer: w...@freebsd.org Ident: $FreeBSD: head/biology/py-biopython/Makefile 413489 2016-04-17 03:55:01Z wen $ Log URL: http://package19.nyi.freebsd.org/data/103i386-default-build-as-user/413919/logs/py27-biopython-1.66.log Build URL: http://package19.nyi.freebsd.org/build.html?mastername=103i386-default-build-as-user&build=413919 Log: >> Building biology/py-biopython build started at Sun Apr 24 14:49:51 UTC 2016 port directory: /usr/ports/biology/py-biopython building for: FreeBSD 103i386-default-build-as-user-job-32 10.3-RELEASE FreeBSD 10.3-RELEASE i386 maintained by: mauri...@arareko.net Makefile ident: $FreeBSD: head/biology/py-biopython/Makefile 413489 2016-04-17 03:55:01Z wen $ Poudriere version: 3.1.12 Host OSVERSION: 1100102 Jail OSVERSION: 1003000 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 UNAME_v=FreeBSD 10.3-RELEASE UNAME_r=10.3-RELEASE BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 OPSYS=FreeBSD ARCH=i386 LINUX_OSRELEASE=2.6.32 SAVED_TERM= MASTERMNT=/poudriere/data/.m/103i386-default-build-as-user/ref FORCE_PACKAGE=yes PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ POUDRIERE_BUILD_TYPE=bulk PKGNAME=py27-biopython-1.66 OSREL=10.3 _OSRELEASE=10.3-RELEASE PYTHONBASE=/usr/local OLDPWD=/ _SMP_CPUS=32 PWD=/poudriere/data/.m/103i386-default-build-as-user/ref/.p/pool MASTERNAME=103i386-default-build-as-user SCRIPTPREFIX=/usr/local/share/poudriere _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun USER=root HOME=/root POUDRIERE_VERSION=3.1.12 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh CONFIGURE_MAX_CMD_LEN=262144 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes _JAVA_OS_LIST_REGEXP=native\|linux OSVERSION=1003000 ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for py27-biopython-1.66: REPORTLAB=on: PDF support in Bio.Graphics module ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-biopython/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-biopython/work HOME=/wrkdirs/usr/ports/biology/py-biopython/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-biopython/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-biopython/work HOME=/wrkdirs/usr/ports/biology/py-biopython/work TMPDIR="/tmp" NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd10 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_VER=2.7 PYTHON_VERSION=python2.7 OSREL=10.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/biopython" EXAMPLESDIR="share/examples/biopython" DATADIR="share/biopython" WWWDIR="www/biopython" ETCDIR="etc/biopython" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/biopython DOCSDIR=/usr/local/share/doc/biopython EXAMPLESDIR=/usr/local/share/examples/biopython WWWDIR=/usr/local/www/biopython ETCDIR=/usr/local/etc/biopython --End SUB_LIST-- ---Begin make.conf--- MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles /usr/local/etc/poudriere.d/make.conf WITH_PKGNG=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- === === === ===> py27-biopython-1.66 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.7.2.txz [103i386-default-build-as-user-job-32] Installing pkg-1.7.2... [103i386-default-build-as-user-job-32] Extracting pkg-1.7.2: .. done ===> py27-biopython-1.66 dep
[exp - 103i386-default-build-as-user][biology/py-biopython] Failed for py27-biopython-1.66 in fetch
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: mauri...@arareko.net Last committer: w...@freebsd.org Ident: $FreeBSD: head/biology/py-biopython/Makefile 413489 2016-04-17 03:55:01Z wen $ Log URL: http://package19.nyi.freebsd.org/data/103i386-default-build-as-user/413797/logs/py27-biopython-1.66.log Build URL: http://package19.nyi.freebsd.org/build.html?mastername=103i386-default-build-as-user&build=413797 Log: >> Building biology/py-biopython build started at Sat Apr 23 14:53:53 UTC 2016 port directory: /usr/ports/biology/py-biopython building for: FreeBSD 103i386-default-build-as-user-job-02 10.3-RELEASE FreeBSD 10.3-RELEASE i386 maintained by: mauri...@arareko.net Makefile ident: $FreeBSD: head/biology/py-biopython/Makefile 413489 2016-04-17 03:55:01Z wen $ Poudriere version: 3.1.12 Host OSVERSION: 1100102 Jail OSVERSION: 1003000 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 UNAME_v=FreeBSD 10.3-RELEASE UNAME_r=10.3-RELEASE BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 OPSYS=FreeBSD ARCH=i386 LINUX_OSRELEASE=2.6.32 SAVED_TERM= MASTERMNT=/poudriere/data/.m/103i386-default-build-as-user/ref FORCE_PACKAGE=yes PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ POUDRIERE_BUILD_TYPE=bulk PKGNAME=py27-biopython-1.66 OSREL=10.3 _OSRELEASE=10.3-RELEASE PYTHONBASE=/usr/local OLDPWD=/ _SMP_CPUS=32 PWD=/poudriere/data/.m/103i386-default-build-as-user/ref/.p/pool MASTERNAME=103i386-default-build-as-user SCRIPTPREFIX=/usr/local/share/poudriere _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun USER=root HOME=/root POUDRIERE_VERSION=3.1.12 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh CONFIGURE_MAX_CMD_LEN=262144 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes _JAVA_OS_LIST_REGEXP=native\|linux OSVERSION=1003000 ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for py27-biopython-1.66: REPORTLAB=on: PDF support in Bio.Graphics module ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-biopython/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-biopython/work HOME=/wrkdirs/usr/ports/biology/py-biopython/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-biopython/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-biopython/work HOME=/wrkdirs/usr/ports/biology/py-biopython/work TMPDIR="/tmp" NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd10 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_VER=2.7 PYTHON_VERSION=python2.7 OSREL=10.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/biopython" EXAMPLESDIR="share/examples/biopython" DATADIR="share/biopython" WWWDIR="www/biopython" ETCDIR="etc/biopython" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/biopython DOCSDIR=/usr/local/share/doc/biopython EXAMPLESDIR=/usr/local/share/examples/biopython WWWDIR=/usr/local/www/biopython ETCDIR=/usr/local/etc/biopython --End SUB_LIST-- ---Begin make.conf--- MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles /usr/local/etc/poudriere.d/make.conf WITH_PKGNG=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- === === === ===> py27-biopython-1.66 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.7.2.txz [103i386-default-build-as-user-job-02] Installing pkg-1.7.2... [103i386-default-build-as-user-job-02] Extracting pkg-1.7.2: .. done ===> py27-biopython-1.66 dep
[exp - 103i386-default-build-as-user][biology/py-biopython] Failed for py27-biopython-1.66 in fetch
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: mauri...@arareko.net Last committer: w...@freebsd.org Ident: $FreeBSD: head/biology/py-biopython/Makefile 413489 2016-04-17 03:55:01Z wen $ Log URL: http://package19.nyi.freebsd.org/data/103i386-default-build-as-user/413758/logs/py27-biopython-1.66.log Build URL: http://package19.nyi.freebsd.org/build.html?mastername=103i386-default-build-as-user&build=413758 Log: >> Building biology/py-biopython build started at Fri Apr 22 14:51:14 UTC 2016 port directory: /usr/ports/biology/py-biopython building for: FreeBSD 103i386-default-build-as-user-job-23 10.3-RELEASE FreeBSD 10.3-RELEASE i386 maintained by: mauri...@arareko.net Makefile ident: $FreeBSD: head/biology/py-biopython/Makefile 413489 2016-04-17 03:55:01Z wen $ Poudriere version: 3.1.12 Host OSVERSION: 1100102 Jail OSVERSION: 1003000 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 UNAME_v=FreeBSD 10.3-RELEASE UNAME_r=10.3-RELEASE BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 OPSYS=FreeBSD ARCH=i386 LINUX_OSRELEASE=2.6.32 SAVED_TERM= MASTERMNT=/poudriere/data/.m/103i386-default-build-as-user/ref FORCE_PACKAGE=yes PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ POUDRIERE_BUILD_TYPE=bulk PKGNAME=py27-biopython-1.66 OSREL=10.3 _OSRELEASE=10.3-RELEASE PYTHONBASE=/usr/local OLDPWD=/ _SMP_CPUS=32 PWD=/poudriere/data/.m/103i386-default-build-as-user/ref/.p/pool MASTERNAME=103i386-default-build-as-user SCRIPTPREFIX=/usr/local/share/poudriere _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun USER=root HOME=/root POUDRIERE_VERSION=3.1.12 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh CONFIGURE_MAX_CMD_LEN=262144 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes _JAVA_OS_LIST_REGEXP=native\|linux OSVERSION=1003000 ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for py27-biopython-1.66: REPORTLAB=on: PDF support in Bio.Graphics module ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-biopython/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-biopython/work HOME=/wrkdirs/usr/ports/biology/py-biopython/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-biopython/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-biopython/work HOME=/wrkdirs/usr/ports/biology/py-biopython/work TMPDIR="/tmp" NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd10 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_VER=2.7 PYTHON_VERSION=python2.7 OSREL=10.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/biopython" EXAMPLESDIR="share/examples/biopython" DATADIR="share/biopython" WWWDIR="www/biopython" ETCDIR="etc/biopython" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/biopython DOCSDIR=/usr/local/share/doc/biopython EXAMPLESDIR=/usr/local/share/examples/biopython WWWDIR=/usr/local/www/biopython ETCDIR=/usr/local/etc/biopython --End SUB_LIST-- ---Begin make.conf--- MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles /usr/local/etc/poudriere.d/make.conf WITH_PKGNG=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- === === === ===> py27-biopython-1.66 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.7.2.txz [103i386-default-build-as-user-job-23] Installing pkg-1.7.2... [103i386-default-build-as-user-job-23] Extracting pkg-1.7.2: .. done ===> py27-biopython-1.66 dep
[exp - 103i386-default-build-as-user][biology/py-biopython] Failed for py27-biopython-1.66 in fetch
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: mauri...@arareko.net Last committer: w...@freebsd.org Ident: $FreeBSD: head/biology/py-biopython/Makefile 413489 2016-04-17 03:55:01Z wen $ Log URL: http://package19.nyi.freebsd.org/data/103i386-default-build-as-user/413709/logs/py27-biopython-1.66.log Build URL: http://package19.nyi.freebsd.org/build.html?mastername=103i386-default-build-as-user&build=413709 Log: >> Building biology/py-biopython build started at Thu Apr 21 14:49:57 UTC 2016 port directory: /usr/ports/biology/py-biopython building for: FreeBSD 103i386-default-build-as-user-job-29 10.3-RELEASE FreeBSD 10.3-RELEASE i386 maintained by: mauri...@arareko.net Makefile ident: $FreeBSD: head/biology/py-biopython/Makefile 413489 2016-04-17 03:55:01Z wen $ Poudriere version: 3.1.12 Host OSVERSION: 1100102 Jail OSVERSION: 1003000 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 UNAME_v=FreeBSD 10.3-RELEASE UNAME_r=10.3-RELEASE BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 OPSYS=FreeBSD ARCH=i386 LINUX_OSRELEASE=2.6.32 SAVED_TERM= MASTERMNT=/poudriere/data/.m/103i386-default-build-as-user/ref FORCE_PACKAGE=yes PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ POUDRIERE_BUILD_TYPE=bulk PKGNAME=py27-biopython-1.66 OSREL=10.3 _OSRELEASE=10.3-RELEASE PYTHONBASE=/usr/local OLDPWD=/ _SMP_CPUS=32 PWD=/poudriere/data/.m/103i386-default-build-as-user/ref/.p/pool MASTERNAME=103i386-default-build-as-user SCRIPTPREFIX=/usr/local/share/poudriere _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun USER=root HOME=/root POUDRIERE_VERSION=3.1.12 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh CONFIGURE_MAX_CMD_LEN=262144 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes _JAVA_OS_LIST_REGEXP=native\|linux OSVERSION=1003000 ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for py27-biopython-1.66: REPORTLAB=on: PDF support in Bio.Graphics module ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-biopython/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-biopython/work HOME=/wrkdirs/usr/ports/biology/py-biopython/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-biopython/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-biopython/work HOME=/wrkdirs/usr/ports/biology/py-biopython/work TMPDIR="/tmp" NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd10 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_VER=2.7 PYTHON_VERSION=python2.7 OSREL=10.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/biopython" EXAMPLESDIR="share/examples/biopython" DATADIR="share/biopython" WWWDIR="www/biopython" ETCDIR="etc/biopython" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/biopython DOCSDIR=/usr/local/share/doc/biopython EXAMPLESDIR=/usr/local/share/examples/biopython WWWDIR=/usr/local/www/biopython ETCDIR=/usr/local/etc/biopython --End SUB_LIST-- ---Begin make.conf--- MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles /usr/local/etc/poudriere.d/make.conf WITH_PKGNG=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- === === === ===> py27-biopython-1.66 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.7.2.txz [103i386-default-build-as-user-job-29] Installing pkg-1.7.2... [103i386-default-build-as-user-job-29] Extracting pkg-1.7.2: .. done ===> py27-biopython-1.66 dep
[exp - 103i386-default-build-as-user][biology/py-biopython] Failed for py27-biopython-1.66 in fetch
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: mauri...@arareko.net Last committer: w...@freebsd.org Ident: $FreeBSD: head/biology/py-biopython/Makefile 413489 2016-04-17 03:55:01Z wen $ Log URL: http://package19.nyi.freebsd.org/data/103i386-default-build-as-user/413665/logs/py27-biopython-1.66.log Build URL: http://package19.nyi.freebsd.org/build.html?mastername=103i386-default-build-as-user&build=413665 Log: >> Building biology/py-biopython build started at Wed Apr 20 14:55:10 UTC 2016 port directory: /usr/ports/biology/py-biopython building for: FreeBSD 103i386-default-build-as-user-job-01 10.3-RELEASE FreeBSD 10.3-RELEASE i386 maintained by: mauri...@arareko.net Makefile ident: $FreeBSD: head/biology/py-biopython/Makefile 413489 2016-04-17 03:55:01Z wen $ Poudriere version: 3.1.12 Host OSVERSION: 1100102 Jail OSVERSION: 1003000 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 UNAME_v=FreeBSD 10.3-RELEASE UNAME_r=10.3-RELEASE BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 OPSYS=FreeBSD ARCH=i386 LINUX_OSRELEASE=2.6.32 SAVED_TERM= MASTERMNT=/poudriere/data/.m/103i386-default-build-as-user/ref FORCE_PACKAGE=yes PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ POUDRIERE_BUILD_TYPE=bulk PKGNAME=py27-biopython-1.66 OSREL=10.3 _OSRELEASE=10.3-RELEASE PYTHONBASE=/usr/local OLDPWD=/ _SMP_CPUS=32 PWD=/poudriere/data/.m/103i386-default-build-as-user/ref/.p/pool MASTERNAME=103i386-default-build-as-user SCRIPTPREFIX=/usr/local/share/poudriere _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun USER=root HOME=/root POUDRIERE_VERSION=3.1.12 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh CONFIGURE_MAX_CMD_LEN=262144 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes _JAVA_OS_LIST_REGEXP=native\|linux OSVERSION=1003000 ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for py27-biopython-1.66: REPORTLAB=on: PDF support in Bio.Graphics module ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-biopython/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-biopython/work HOME=/wrkdirs/usr/ports/biology/py-biopython/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-biopython/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-biopython/work HOME=/wrkdirs/usr/ports/biology/py-biopython/work TMPDIR="/tmp" NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd10 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_VER=2.7 PYTHON_VERSION=python2.7 OSREL=10.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/biopython" EXAMPLESDIR="share/examples/biopython" DATADIR="share/biopython" WWWDIR="www/biopython" ETCDIR="etc/biopython" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/biopython DOCSDIR=/usr/local/share/doc/biopython EXAMPLESDIR=/usr/local/share/examples/biopython WWWDIR=/usr/local/www/biopython ETCDIR=/usr/local/etc/biopython --End SUB_LIST-- ---Begin make.conf--- MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles /usr/local/etc/poudriere.d/make.conf WITH_PKGNG=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- === === === ===> py27-biopython-1.66 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.7.2.txz [103i386-default-build-as-user-job-01] Installing pkg-1.7.2... [103i386-default-build-as-user-job-01] Extracting pkg-1.7.2: .. done ===> py27-biopython-1.66 dep
[exp - 103i386-default-build-as-user][biology/py-biopython] Failed for py27-biopython-1.66 in fetch
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: mauri...@arareko.net Last committer: w...@freebsd.org Ident: $FreeBSD: head/biology/py-biopython/Makefile 413489 2016-04-17 03:55:01Z wen $ Log URL: http://package19.nyi.freebsd.org/data/103i386-default-build-as-user/413616/logs/py27-biopython-1.66.log Build URL: http://package19.nyi.freebsd.org/build.html?mastername=103i386-default-build-as-user&build=413616 Log: >> Building biology/py-biopython build started at Tue Apr 19 14:54:42 UTC 2016 port directory: /usr/ports/biology/py-biopython building for: FreeBSD 103i386-default-build-as-user-job-28 10.3-RELEASE FreeBSD 10.3-RELEASE i386 maintained by: mauri...@arareko.net Makefile ident: $FreeBSD: head/biology/py-biopython/Makefile 413489 2016-04-17 03:55:01Z wen $ Poudriere version: 3.1.12 Host OSVERSION: 1100102 Jail OSVERSION: 1003000 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 UNAME_v=FreeBSD 10.3-RELEASE UNAME_r=10.3-RELEASE BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 OPSYS=FreeBSD ARCH=i386 LINUX_OSRELEASE=2.6.32 SAVED_TERM= MASTERMNT=/poudriere/data/.m/103i386-default-build-as-user/ref FORCE_PACKAGE=yes PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ POUDRIERE_BUILD_TYPE=bulk PKGNAME=py27-biopython-1.66 OSREL=10.3 _OSRELEASE=10.3-RELEASE PYTHONBASE=/usr/local OLDPWD=/ _SMP_CPUS=32 PWD=/poudriere/data/.m/103i386-default-build-as-user/ref/.p/pool MASTERNAME=103i386-default-build-as-user SCRIPTPREFIX=/usr/local/share/poudriere _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun USER=root HOME=/root POUDRIERE_VERSION=3.1.12 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh CONFIGURE_MAX_CMD_LEN=262144 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes _JAVA_OS_LIST_REGEXP=native\|linux OSVERSION=1003000 ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for py27-biopython-1.66: REPORTLAB=on: PDF support in Bio.Graphics module ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-biopython/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-biopython/work HOME=/wrkdirs/usr/ports/biology/py-biopython/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-biopython/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-biopython/work HOME=/wrkdirs/usr/ports/biology/py-biopython/work TMPDIR="/tmp" NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd10 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_VER=2.7 PYTHON_VERSION=python2.7 OSREL=10.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/biopython" EXAMPLESDIR="share/examples/biopython" DATADIR="share/biopython" WWWDIR="www/biopython" ETCDIR="etc/biopython" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/biopython DOCSDIR=/usr/local/share/doc/biopython EXAMPLESDIR=/usr/local/share/examples/biopython WWWDIR=/usr/local/www/biopython ETCDIR=/usr/local/etc/biopython --End SUB_LIST-- ---Begin make.conf--- MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles /usr/local/etc/poudriere.d/make.conf WITH_PKGNG=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- === === === ===> py27-biopython-1.66 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.7.2.txz [103i386-default-build-as-user-job-28] Installing pkg-1.7.2... [103i386-default-build-as-user-job-28] Extracting pkg-1.7.2: .. done ===> py27-biopython-1.66 dep
[exp - 103i386-default-build-as-user][biology/py-biopython] Failed for py27-biopython-1.66 in fetch
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: mauri...@arareko.net Last committer: w...@freebsd.org Ident: $FreeBSD: head/biology/py-biopython/Makefile 413489 2016-04-17 03:55:01Z wen $ Log URL: http://package19.nyi.freebsd.org/data/103i386-default-build-as-user/413544/logs/py27-biopython-1.66.log Build URL: http://package19.nyi.freebsd.org/build.html?mastername=103i386-default-build-as-user&build=413544 Log: >> Building biology/py-biopython build started at Mon Apr 18 14:53:43 UTC 2016 port directory: /usr/ports/biology/py-biopython building for: FreeBSD 103i386-default-build-as-user-job-29 10.3-RELEASE FreeBSD 10.3-RELEASE i386 maintained by: mauri...@arareko.net Makefile ident: $FreeBSD: head/biology/py-biopython/Makefile 413489 2016-04-17 03:55:01Z wen $ Poudriere version: 3.1.12 Host OSVERSION: 1100102 Jail OSVERSION: 1003000 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 UNAME_v=FreeBSD 10.3-RELEASE UNAME_r=10.3-RELEASE BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 OPSYS=FreeBSD ARCH=i386 LINUX_OSRELEASE=2.6.32 SAVED_TERM= MASTERMNT=/poudriere/data/.m/103i386-default-build-as-user/ref FORCE_PACKAGE=yes PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ POUDRIERE_BUILD_TYPE=bulk PKGNAME=py27-biopython-1.66 OSREL=10.3 _OSRELEASE=10.3-RELEASE PYTHONBASE=/usr/local OLDPWD=/ _SMP_CPUS=32 PWD=/poudriere/data/.m/103i386-default-build-as-user/ref/.p/pool MASTERNAME=103i386-default-build-as-user SCRIPTPREFIX=/usr/local/share/poudriere _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun USER=root HOME=/root POUDRIERE_VERSION=3.1.12 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh CONFIGURE_MAX_CMD_LEN=262144 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes _JAVA_OS_LIST_REGEXP=native\|linux OSVERSION=1003000 ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for py27-biopython-1.66: REPORTLAB=on: PDF support in Bio.Graphics module ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-biopython/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-biopython/work HOME=/wrkdirs/usr/ports/biology/py-biopython/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-biopython/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-biopython/work HOME=/wrkdirs/usr/ports/biology/py-biopython/work TMPDIR="/tmp" NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd10 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_VER=2.7 PYTHON_VERSION=python2.7 OSREL=10.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/biopython" EXAMPLESDIR="share/examples/biopython" DATADIR="share/biopython" WWWDIR="www/biopython" ETCDIR="etc/biopython" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/biopython DOCSDIR=/usr/local/share/doc/biopython EXAMPLESDIR=/usr/local/share/examples/biopython WWWDIR=/usr/local/www/biopython ETCDIR=/usr/local/etc/biopython --End SUB_LIST-- ---Begin make.conf--- MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles /usr/local/etc/poudriere.d/make.conf WITH_PKGNG=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- === === === ===> py27-biopython-1.66 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.7.2.txz [103i386-default-build-as-user-job-29] Installing pkg-1.7.2... [103i386-default-build-as-user-job-29] Extracting pkg-1.7.2: .. done ===> py27-biopython-1.66 dep