[package - head-amd64-default][biology/phylip] Failed for phylip-3.696, 1 in patch

2015-07-28 Thread pkg-fallout

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: po...@freebsd.org
Last committer: da...@freebsd.org
Ident:  $FreeBSD: head/biology/phylip/Makefile 392887 2015-07-25 
15:06:48Z danfe $
Log URL:
http://beefy4.nyi.freebsd.org/data/head-amd64-default/p393044_s285925/logs/phylip-3.696,1.log
Build URL:  
http://beefy4.nyi.freebsd.org/build.html?mastername=head-amd64-defaultbuild=p393044_s285925
Log:

 Building biology/phylip
build started at Wed Jul 29 02:07:03 UTC 2015
port directory: /usr/ports/biology/phylip
building for: FreeBSD head-amd64-default-job-21 11.0-CURRENT FreeBSD 
11.0-CURRENT r285925 amd64
maintained by: po...@freebsd.org
Makefile ident:  $FreeBSD: head/biology/phylip/Makefile 392887 2015-07-25 
15:06:48Z danfe $
Poudriere version: 3.1.7
Host OSVERSION: 1100077
Jail OSVERSION: 1100077

---Begin Environment---
SHELL=/bin/csh
OSVERSION=1100077
UNAME_v=FreeBSD 11.0-CURRENT r285925
UNAME_r=11.0-CURRENT
LC_COLLATE=C
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=phylip-3.696,1
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool
MASTERNAME=head-amd64-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.7
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
---End Environment---

---Begin OPTIONS List---
=== The following configuration options are available for phylip-3.696,1:
 DOCS=on: Build and/or install documentation
=== Use 'make config' to modify these settings
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/phylip/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/phylip/work  
HOME=/wrkdirs/usr/ports/biology/phylip/work TMPDIR=/tmp SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/phylip/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/phylip/work  
HOME=/wrkdirs/usr/ports/biology/phylip/work TMPDIR=/tmp NO_PIE=yes 
SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  
LIBDIR=/usr/lib  CC=cc CFLAGS=-O2 -pipe  -fstack-protector 
-fno-strict-aliasing  CPP=cpp CPPFLAGS=  LDFLAGS= -fstack-protector 
LIBS=  CXX=c++ CXXFLAGS=-O2 -pipe -fstack-protector -fno-strict-aliasing  
 MANPREFIX=/usr/local BSD_INSTALL_PROGRAM=install  -s -m 555  
BSD_INSTALL_LIB=install  -s -m 444  BSD_INSTALL_SCRIPT=install  -m 555  
BSD_INSTALL_DATA=install  -m 0644  BSD_INSTALL_MAN=install  -m 444
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=
PORTEXAMPLES=
LIB32DIR=lib
DOCSDIR=share/doc/phylip
EXAMPLESDIR=share/examples/phylip
DATADIR=share/phylip
WWWDIR=www/phylip
ETCDIR=etc/phylip
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/phylip
DOCSDIR=/usr/local/share/doc/phylip
EXAMPLESDIR=/usr/local/share/examples/phylip
WWWDIR=/usr/local/www/phylip
ETCDIR=/usr/local/etc/phylip
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===phase: check-sanity   
===  License BSD2CLAUSE accepted by the user
===
===phase: pkg-depends
===   phylip-3.696,1 depends on file: /usr/local/sbin/pkg - not found
===   Installing existing package /packages/All/pkg-1.5.5.txz
[head-amd64-default-job-21] Installing pkg-1.5.5...
[head-amd64-default-job-21] Extracting pkg-1.5.5: .. done
Message for pkg-1.5.5:
If you are upgrading from the old package format, first run:

  # pkg2ng
===   phylip-3.696,1 depends on file: /usr/local/sbin/pkg - found
===   Returning to build of phylip-3.696,1
===
===phase: fetch-depends  
===
===phase: fetch  
===  License BSD2CLAUSE accepted by the user
=== Fetching all distfiles required by phylip-3.696,1 for building
===
===phase: checksum   
===  License 

[package - head-amd64-default][biology/phylip] Failed for phylip-3.696, 1 in patch

2015-07-27 Thread pkg-fallout

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: po...@freebsd.org
Last committer: da...@freebsd.org
Ident:  $FreeBSD: head/biology/phylip/Makefile 392887 2015-07-25 
15:06:48Z danfe $
Log URL:
http://beefy4.nyi.freebsd.org/data/head-amd64-default/p392908_s285884/logs/phylip-3.696,1.log
Build URL:  
http://beefy4.nyi.freebsd.org/build.html?mastername=head-amd64-defaultbuild=p392908_s285884
Log:

 Building biology/phylip
build started at Mon Jul 27 14:24:15 UTC 2015
port directory: /usr/ports/biology/phylip
building for: FreeBSD head-amd64-default-job-13 11.0-CURRENT FreeBSD 
11.0-CURRENT r285884 amd64
maintained by: po...@freebsd.org
Makefile ident:  $FreeBSD: head/biology/phylip/Makefile 392887 2015-07-25 
15:06:48Z danfe $
Poudriere version: 3.1.7
Host OSVERSION: 1100077
Jail OSVERSION: 1100077

---Begin Environment---
SHELL=/bin/csh
OSVERSION=1100077
UNAME_v=FreeBSD 11.0-CURRENT r285884
UNAME_r=11.0-CURRENT
LC_COLLATE=C
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=phylip-3.696,1
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool
MASTERNAME=head-amd64-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.7
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
---End Environment---

---Begin OPTIONS List---
=== The following configuration options are available for phylip-3.696,1:
 DOCS=on: Build and/or install documentation
=== Use 'make config' to modify these settings
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/phylip/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/phylip/work  
HOME=/wrkdirs/usr/ports/biology/phylip/work TMPDIR=/tmp SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/phylip/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/phylip/work  
HOME=/wrkdirs/usr/ports/biology/phylip/work TMPDIR=/tmp NO_PIE=yes 
SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  
LIBDIR=/usr/lib  CC=cc CFLAGS=-O2 -pipe  -fstack-protector 
-fno-strict-aliasing  CPP=cpp CPPFLAGS=  LDFLAGS= -fstack-protector 
LIBS=  CXX=c++ CXXFLAGS=-O2 -pipe -fstack-protector -fno-strict-aliasing  
 MANPREFIX=/usr/local BSD_INSTALL_PROGRAM=install  -s -m 555  
BSD_INSTALL_LIB=install  -s -m 444  BSD_INSTALL_SCRIPT=install  -m 555  
BSD_INSTALL_DATA=install  -m 0644  BSD_INSTALL_MAN=install  -m 444
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=
PORTEXAMPLES=
LIB32DIR=lib
DOCSDIR=share/doc/phylip
EXAMPLESDIR=share/examples/phylip
DATADIR=share/phylip
WWWDIR=www/phylip
ETCDIR=etc/phylip
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/phylip
DOCSDIR=/usr/local/share/doc/phylip
EXAMPLESDIR=/usr/local/share/examples/phylip
WWWDIR=/usr/local/www/phylip
ETCDIR=/usr/local/etc/phylip
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===phase: check-sanity   
===  License BSD2CLAUSE accepted by the user
===
===phase: pkg-depends
===   phylip-3.696,1 depends on file: /usr/local/sbin/pkg - not found
===   Installing existing package /packages/All/pkg-1.5.5.txz
[head-amd64-default-job-13] Installing pkg-1.5.5...
[head-amd64-default-job-13] Extracting pkg-1.5.5: .. done
Message for pkg-1.5.5:
If you are upgrading from the old package format, first run:

  # pkg2ng
===   phylip-3.696,1 depends on file: /usr/local/sbin/pkg - found
===   Returning to build of phylip-3.696,1
===
===phase: fetch-depends  
===
===phase: fetch  
===  License BSD2CLAUSE accepted by the user
=== Fetching all distfiles required by phylip-3.696,1 for building
===
===phase: checksum   
===  License