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Maintainer: tphil...@potion-studios.com Last committer: ri...@freebsd.org Ident: $FreeBSD: head/biology/mapm3/Makefile 339532 2014-01-12 19:07:28Z riggs $ Log URL: http://beefy7.nyi.freebsd.org/data/head-mips-default/p402431_s291353/logs/mapm3-3.0.log Build URL: http://beefy7.nyi.freebsd.org/build.html?mastername=head-mips-default&build=p402431_s291353 Log: ====>> Building biology/mapm3 build started at Thu Nov 26 07:39:26 UTC 2015 port directory: /usr/ports/biology/mapm3 building for: FreeBSD head-mips-default-job-03 11.0-CURRENT FreeBSD 11.0-CURRENT r291353 mips maintained by: tphil...@potion-studios.com Makefile ident: $FreeBSD: head/biology/mapm3/Makefile 339532 2014-01-12 19:07:28Z riggs $ Poudriere version: 3.1.10 Host OSVERSION: 1100085 Jail OSVERSION: 1100090 !!! Jail is newer than host. (Jail: 1100090, Host: 1100085) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=mips UNAME_m=mips ABI_FILE=/usr/lib/crt1.o OSVERSION=1100090 UNAME_v=FreeBSD 11.0-CURRENT r291353 UNAME_r=11.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM=screen QEMU_EMULATING=1 MASTERMNT=/usr/local/poudriere/data/.m/head-mips-default/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=mapm3-3.0 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/head-mips-default/ref/.p/pool MASTERNAME=head-mips-default SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.10 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/mapm3/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/mapm3/work HOME=/wrkdirs/usr/ports/biology/mapm3/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/mapm3/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/mapm3/work HOME=/wrkdirs/usr/ports/biology/mapm3/work TMPDIR="/tmp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/mapm3" EXAMPLESDIR="share/examples/mapm3" DATADIR="share/mapm3" WWWDIR="www/mapm3" ETCDIR="etc/mapm3" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/mapm3 DOCSDIR=/usr/local/share/doc/mapm3 EXAMPLESDIR=/usr/local/share/examples/mapm3 WWWDIR=/usr/local/www/mapm3 ETCDIR=/usr/local/etc/mapm3 --End SUB_LIST-- ---Begin make.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex <snip> General Information... About MAPMAKER... Release Notes... Starting MAPMAKER... Tutorial... entering commands... abbreviating commands... keyboard editing... PostScript Output... Basic Commands... help... photo... prepare data... load data... save data... quit... Sequences... sequence... history... expand sequence... insert... append... delete... edit sequence... let... names... forget named sequence... translate... Two-Point Analysis... two point... lod table... big lods... near... links... pairwise... group... default linkage criteria... suggest subset... informativeness criteria... Multipoint Analysis... map... draw map... compare... try... ripple... order... build... multipoint criteria... Genome Analysis... make chromosome... assign... attach... unassign... anchor... framework... place... together... list loci... list status... list chromosomes... list assignments... draw chromosome... draw all chromosomes... age... class... make class... Error Detection... error detection... error probability... error thresholds... genotypes... Three Point... use three point... three point... triple linkage criteria... triple exclusion criteria... triple error detection... forget three point... Joining Haplotypes... join haplotypes... list haplotypes... restore haplotypes... Parameters and Options... print names... print maps... tolerance... auto save data... units... centimorgan function... more mode... Miscellaneous Commands... previous commands... review output... change directory... run... time... comment... remark... system... import data... export data... wizard mode... ./lib/makehelp done /nxb-bin/usr/bin/cc -O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89 -G0 -I./lib/ -D_SYS_BSD -D_BIG_DATASETS -c ./mapm/mapmhelp.c -o ./mapm/mapmhelp.o /nxb-bin/usr/bin/cc -O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89 -G0 -I./lib/ -D_SYS_BSD -D_BIG_DATASETS -c ./mapm/database.c -o ./mapm/database.o /nxb-bin/usr/bin/cc -O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89 -G0 -I./lib/ -D_SYS_BSD -D_BIG_DATASETS -c ./mapm/ps_maps.c -o ./mapm/ps_maps.o /nxb-bin/usr/bin/cc ./mapm/state.o ./mapm/reader.o ./mapm/ctm.o ./mapm/print.o ./mapm/sequence.o ./mapm/main.o ./mapm/quick23.o ./mapm/maps.o ./mapm/info.o ./mapm/chroms.o ./mapm/orders.o ./mapm/sys_cmds.o ./mapm/two_cmds.o ./mapm/npt_cmds.o ./mapm/auto_cmd.o ./mapm/mapmhelp.o ./mapm/database.o ./mapm/ps_maps.o lib.o -lm -ltermcap -o mapmaker /nxb-bin/usr/bin/cc -O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89 -G0 -I./lib/ -D_SYS_BSD -D_BIG_DATASETS -c ./quant/qcmds.c -o ./quant/qcmds.o /nxb-bin/usr/bin/cc -O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89 -G0 -I./lib/ -D_SYS_BSD -D_BIG_DATASETS -c ./quant/qctm.c -o ./quant/qctm.o /nxb-bin/usr/bin/cc -O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89 -G0 -I./lib/ -D_SYS_BSD -D_BIG_DATASETS -c ./quant/qdata.c -o ./quant/qdata.o /nxb-bin/usr/bin/cc -O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89 -G0 -I./lib/ -D_SYS_BSD -D_BIG_DATASETS -c ./quant/qseq.c -o ./quant/qseq.o /nxb-bin/usr/bin/cc -O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89 -G0 -I./lib/ -D_SYS_BSD -D_BIG_DATASETS -c ./quant/qtop.c -o ./quant/qtop.o /nxb-bin/usr/bin/cc -O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89 -G0 -I./lib/ -D_SYS_BSD -D_BIG_DATASETS -c ./quant/qraw.c -o ./quant/qraw.o /nxb-bin/usr/bin/cc -O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89 -G0 -I./lib/ -D_SYS_BSD -D_BIG_DATASETS -c ./quant/qprint.c -o ./quant/qprint.o /nxb-bin/usr/bin/cc -O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89 -G0 -I./lib/ -D_SYS_BSD -D_BIG_DATASETS -c ./quant/qcontext.c -o ./quant/qcontext.o /nxb-bin/usr/bin/cc -O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89 -G0 -I./lib/ -D_SYS_BSD -D_BIG_DATASETS -c ./quant/qwiggle.c -o ./quant/qwiggle.o /nxb-bin/usr/bin/cc -O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89 -G0 -I./lib/ -D_SYS_BSD -D_BIG_DATASETS -c ./quant/qps_scan.c -o ./quant/qps_scan.o ./lib/makehelp ./quant/qtlhelp.src ./quant/qtlhelp.c qtl.help qtl.ps General Information... About MAPMAKER/QTL... Release Notes... Starting MAPMAKER/QTL... Tutorial... entering commands... abbreviating commands... keyboard editing... PostScript Output... Basic Commands... help... photo... load data... save data... quit... Sequences... sequence... history... list loci... edit sequence... let... names... forget named sequence... Traits... trait... make trait... show trait... list traits... forget trait... Mapping Commands... map... scan... list scans... show scan... draw scan... forget scan... forget all scans... show peaks... show trys... compare... list compares... show compare... forget compare... forget all compares... show best maps... show linkage map... Parameters and Options... print names... units... auto save data... more mode... Miscellaneous Commands... run... change directory... system... previous commands... review output... time... comment... wizard mode... ./lib/makehelp done /nxb-bin/usr/bin/cc -O2 -pipe -G0 -Wno-return-type -fno-strict-aliasing -std=gnu89 -G0 -I./lib/ -D_SYS_BSD -D_BIG_DATASETS -c ./quant/qtlhelp.c -o ./quant/qtlhelp.o /nxb-bin/usr/bin/cc ./quant/qcmds.o ./quant/qctm.o ./quant/qdata.o ./quant/qseq.o ./quant/qtop.o ./quant/qraw.o ./quant/qprint.o ./quant/qcontext.o ./quant/qwiggle.o ./quant/qps_scan.o ./quant/qtlhelp.o lib.o -lm -ltermcap -o qtl =========================================================================== =======================<phase: run-depends >============================ =========================================================================== =======================<phase: stage >============================ ===> Staging for mapm3-3.0 ===> Generating temporary packing list cp mapmaker mapmaker.help xmapmaker /wrkdirs/usr/ports/biology/mapm3/work/stage/usr/local/bin cp qtl qtl.help xqtl /wrkdirs/usr/ports/biology/mapm3/work/stage/usr/local/bin ====> Compressing man pages (compress-man) =========================================================================== =======================<phase: package >============================ ===> Building package for mapm3-3.0 pkg-static: "/var/run/ld-elf.so.hints": invalid file format *** Error code 1 Stop. make: stopped in /usr/ports/biology/mapm3 _______________________________________________ freebsd-pkg-fallout@freebsd.org mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-pkg-fallout To unsubscribe, send any mail to "freebsd-pkg-fallout-unsubscr...@freebsd.org"
