subject:"\[package \- 110arm64\-quarterly\]\[biology\/bwa\] Failed for bwa\-0.7.9a in build"

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2017-03-24 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/436856/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=436856
Log:

>> Building biology/bwa
build started at Sat Mar 25 03:37:21 UTC 2017
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-15 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Poudriere version: 3.1.16-15-g422980c5
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 15




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
OSVERSION=1100122
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.16-15-g422980c5
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.1
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
 /usr/ports/Mk/Scripts/ports_env.sh 
ARCH=aarch64
CONFIGURE_MAX_CMD_LEN=262144
OPSYS=FreeBSD
OSREL=11.0
OSVERSION=1100122
PYTHONBASE=/usr/local
UID=0
_JAVA_OS_LIST_REGEXP=native\|linux
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
_OSRELEASE=11.0-RELEASE-p1
 Misc Poudriere 
GID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time   (seconds, -t)  unlimited
file size   (512-blocks, -f)  unlimited
data seg size   (kbytes, -d)  1048576
stack size  (kbytes, -s)  1048576
core file size  (512-blocks, -c)  unlimited
max memory size (kbytes, -m)  unlimited
locked memory   (kbytes, -l)  unlimited
m

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2017-03-22 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/436687/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=436687
Log:

>> Building biology/bwa
build started at Thu Mar 23 03:43:34 UTC 2017
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-10 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Poudriere version: 3.1.16-15-g422980c5
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 10




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
OSVERSION=1100122
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.16-15-g422980c5
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.1
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
 /usr/ports/Mk/Scripts/ports_env.sh 
ARCH=aarch64
CONFIGURE_MAX_CMD_LEN=262144
OPSYS=FreeBSD
OSREL=11.0
OSVERSION=1100122
PYTHONBASE=/usr/local
UID=0
_JAVA_OS_LIST_REGEXP=native\|linux
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
_OSRELEASE=11.0-RELEASE-p1
 Misc Poudriere 
GID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time   (seconds, -t)  unlimited
file size   (512-blocks, -f)  unlimited
data seg size   (kbytes, -d)  1048576
stack size  (kbytes, -s)  1048576
core file size  (512-blocks, -c)  unlimited
max memory size (kbytes, -m)  unlimited
locked memory   (kbytes, -l)  unlimited
m

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2017-03-21 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/436487/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=436487
Log:

>> Building biology/bwa
build started at Wed Mar 22 01:08:38 UTC 2017
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-08 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Poudriere version: 3.1.16-1-g2eff4cc2
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 08




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
OSVERSION=1100122
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.16-1-g2eff4cc2
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.1
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
 /usr/ports/Mk/Scripts/ports_env.sh 
ARCH=aarch64
CONFIGURE_MAX_CMD_LEN=262144
OPSYS=FreeBSD
OSREL=11.0
OSVERSION=1100122
PYTHONBASE=/usr/local
UID=0
_JAVA_OS_LIST_REGEXP=native\|linux
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
_OSRELEASE=11.0-RELEASE-p1
 Misc Poudriere 
GID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time   (seconds, -t)  unlimited
file size   (512-blocks, -f)  unlimited
data seg size   (kbytes, -d)  1048576
stack size  (kbytes, -s)  1048576
core file size  (512-blocks, -c)  unlimited
max memory size (kbytes, -m)  unlimited
locked memory   (kbytes, -l)  unlimited
max

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2017-03-16 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/436049/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=436049
Log:

>> Building biology/bwa
build started at Thu Mar 16 17:19:30 UTC 2017
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-15 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Poudriere version: 3.1.15-2-g0a86c900
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 15




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
OSVERSION=1100122
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.15-2-g0a86c900
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.1
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
 /usr/ports/Mk/Scripts/ports_env.sh 
ARCH=aarch64
CONFIGURE_MAX_CMD_LEN=262144
OPSYS=FreeBSD
OSREL=11.0
OSVERSION=1100122
PYTHONBASE=/usr/local
UID=0
_JAVA_OS_LIST_REGEXP=native\|linux
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
_OSRELEASE=11.0-RELEASE-p1
 Misc Poudriere 
GID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time   (seconds, -t)  unlimited
file size   (512-blocks, -f)  unlimited
data seg size   (kbytes, -d)  1048576
stack size  (kbytes, -s)  1048576
core file size  (512-blocks, -c)  unlimited
max memory size (kbytes, -m)  unlimited
locked memory   (kbytes, -l)  unlimited
max

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2017-03-11 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/435783/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=435783
Log:

>> Building biology/bwa
build started at Sat Mar 11 17:15:41 UTC 2017
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-10 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Poudriere version: 3.1.14-183-g5366a370
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 10




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
OSVERSION=1100122
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14-183-g5366a370
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.1
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
 /usr/ports/Mk/Scripts/ports_env.sh 
ARCH=aarch64
CONFIGURE_MAX_CMD_LEN=262144
OPSYS=FreeBSD
OSREL=11.0
OSVERSION=1100122
PYTHONBASE=/usr/local
UID=0
_JAVA_OS_LIST_REGEXP=native\|linux
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
_OSRELEASE=11.0-RELEASE-p1
 Misc Poudriere 
GID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time   (seconds, -t)  unlimited
file size   (512-blocks, -f)  unlimited
data seg size   (kbytes, -d)  1048576
stack size  (kbytes, -s)  1048576
core file size  (512-blocks, -c)  unlimited
max memory size (kbytes, -m)  unlimited
locked memory   (kbytes, -l)  unlimited

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2017-03-09 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/435737/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=435737
Log:

>> Building biology/bwa
build started at Fri Mar 10 00:57:27 UTC 2017
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-22 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Poudriere version: 3.1.14-176-g79485659
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 22




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
OSVERSION=1100122
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14-176-g79485659
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.1
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
 /usr/ports/Mk/Scripts/ports_env.sh 
ARCH=aarch64
CONFIGURE_MAX_CMD_LEN=262144
OPSYS=FreeBSD
OSREL=11.0
OSVERSION=1100122
PYTHONBASE=/usr/local
UID=0
_JAVA_OS_LIST_REGEXP=native\|linux
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
_OSRELEASE=11.0-RELEASE-p1
 Misc Poudriere 
GID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time   (seconds, -t)  unlimited
file size   (512-blocks, -f)  unlimited
data seg size   (kbytes, -d)  1048576
stack size  (kbytes, -s)  1048576
core file size  (512-blocks, -c)  unlimited
max memory size (kbytes, -m)  unlimited
locked memory   (kbytes, -l)  unlimited

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2017-03-06 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/435574/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=435574
Log:

>> Building biology/bwa
build started at Tue Mar  7 03:40:09 UTC 2017
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-11 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 11




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
OSVERSION=1100122
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.1
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
 /usr/ports/Mk/Scripts/ports_env.sh 
ARCH=aarch64
CONFIGURE_MAX_CMD_LEN=262144
OPSYS=FreeBSD
OSREL=11.0
OSVERSION=1100122
PYTHONBASE=/usr/local
UID=0
_JAVA_OS_LIST_REGEXP=native\|linux
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
_OSRELEASE=11.0-RELEASE-p1
 Misc Poudriere 
GID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time   (seconds, -t)  unlimited
file size   (512-blocks, -f)  unlimited
data seg size   (kbytes, -d)  1048576
stack size  (kbytes, -s)  1048576
core file size  (512-blocks, -c)  unlimited
max memory size (kbytes, -m)  unlimited
locked memory   (kbytes, -l)  unlimited
max user processes

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2017-03-04 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/435355/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=435355
Log:

>> Building biology/bwa
build started at Sun Mar  5 03:42:58 UTC 2017
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-02 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 02




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
OSVERSION=1100122
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.1
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
 /usr/ports/Mk/Scripts/ports_env.sh 
ARCH=aarch64
CONFIGURE_MAX_CMD_LEN=262144
OPSYS=FreeBSD
OSREL=11.0
OSVERSION=1100122
PYTHONBASE=/usr/local
UID=0
_JAVA_OS_LIST_REGEXP=native\|linux
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
_OSRELEASE=11.0-RELEASE-p1
 Misc Poudriere 
GID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time   (seconds, -t)  unlimited
file size   (512-blocks, -f)  unlimited
data seg size   (kbytes, -d)  1048576
stack size  (kbytes, -s)  1048576
core file size  (512-blocks, -c)  unlimited
max memory size (kbytes, -m)  unlimited
locked memory   (kbytes, -l)  unlimited
max user processes

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2017-03-01 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/435165/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=435165
Log:

>> Building biology/bwa
build started at Thu Mar  2 04:53:55 UTC 2017
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-17 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 17




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
OSVERSION=1100122
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.1
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
 /usr/ports/Mk/Scripts/ports_env.sh 
ARCH=aarch64
CONFIGURE_MAX_CMD_LEN=262144
OPSYS=FreeBSD
OSREL=11.0
OSVERSION=1100122
PYTHONBASE=/usr/local
UID=0
_JAVA_OS_LIST_REGEXP=native\|linux
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
_OSRELEASE=11.0-RELEASE-p1
 Misc Poudriere 
GID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time   (seconds, -t)  unlimited
file size   (512-blocks, -f)  unlimited
data seg size   (kbytes, -d)  1048576
stack size  (kbytes, -s)  1048576
core file size  (512-blocks, -c)  unlimited
max memory size (kbytes, -m)  unlimited
locked memory   (kbytes, -l)  unlimited
max user processes  (-u)  8
open files

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2017-02-25 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/434718/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=434718
Log:

>> Building biology/bwa
build started at Sun Feb 26 02:29:49 UTC 2017
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-03 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 03




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
OSVERSION=1100122
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.1
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
 /usr/ports/Mk/Scripts/ports_env.sh 
ARCH=aarch64
CONFIGURE_MAX_CMD_LEN=262144
OPSYS=FreeBSD
OSREL=11.0
OSVERSION=1100122
PYTHONBASE=/usr/local
UID=0
_JAVA_OS_LIST_REGEXP=native\|linux
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
_OSRELEASE=11.0-RELEASE-p1
 Misc Poudriere 
GID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time   (seconds, -t)  unlimited
file size   (512-blocks, -f)  unlimited
data seg size   (kbytes, -d)  1048576
stack size  (kbytes, -s)  1048576
core file size  (512-blocks, -c)  unlimited
max memory size (kbytes, -m)  unlimited
locked memory   (kbytes, -l)  unlimited
max user processes  (-u)  8
open files

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2017-02-16 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/434150/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=434150
Log:

>> Building biology/bwa
build started at Thu Feb 16 10:00:27 UTC 2017
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-11 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 11




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.1
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.9.4_1.txz
[110arm64-quarterly-job-11] Installing pkg-1.9.4_1...
[110arm64-quarterly-job-11] Extracting pkg-1.9.4_1: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to build

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2017-02-11 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/433893/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=433893
Log:

>> Building biology/bwa
build started at Sun Feb 12 03:47:50 UTC 2017
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-02 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 02




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.1
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.9.4_1.txz
[110arm64-quarterly-job-02] Installing pkg-1.9.4_1...
[110arm64-quarterly-job-02] Extracting pkg-1.9.4_1: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to build

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2017-02-10 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/433812/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=433812
Log:

>> Building biology/bwa
build started at Sat Feb 11 03:42:16 UTC 2017
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-15 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 15




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.1
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.9.4_1.txz
[110arm64-quarterly-job-15] Installing pkg-1.9.4_1...
[110arm64-quarterly-job-15] Extracting pkg-1.9.4_1: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to build

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2017-02-08 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/433679/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=433679
Log:

>> Building biology/bwa
build started at Thu Feb  9 03:57:18 UTC 2017
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-08 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 08




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.1
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.9.4_1.txz
[110arm64-quarterly-job-08] Installing pkg-1.9.4_1...
[110arm64-quarterly-job-08] Extracting pkg-1.9.4_1: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to build

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2017-02-04 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/433294/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=433294
Log:

>> Building biology/bwa
build started at Sun Feb  5 03:59:22 UTC 2017
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-08 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 08




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.1
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.9.4_1.txz
[110arm64-quarterly-job-08] Installing pkg-1.9.4_1...
[110arm64-quarterly-job-08] Extracting pkg-1.9.4_1: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to build

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2017-02-01 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/433030/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=433030
Log:

>> Building biology/bwa
build started at Thu Feb  2 06:07:46 UTC 2017
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-09 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 09




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.1
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.9.4_1.txz
[110arm64-quarterly-job-09] Installing pkg-1.9.4_1...
[110arm64-quarterly-job-09] Extracting pkg-1.9.4_1: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to build

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2017-01-31 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/432890/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=432890
Log:

>> Building biology/bwa
build started at Tue Jan 31 09:36:36 UTC 2017
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-07 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 07




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.1
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.9.4_1.txz
[110arm64-quarterly-job-07] Installing pkg-1.9.4_1...
[110arm64-quarterly-job-07] Extracting pkg-1.9.4_1: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to build

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2017-01-27 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/432603/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=432603
Log:

>> Building biology/bwa
build started at Sat Jan 28 05:49:19 UTC 2017
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-02 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 02




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.1
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.9.4_1.txz
[110arm64-quarterly-job-02] Installing pkg-1.9.4_1...
[110arm64-quarterly-job-02] Extracting pkg-1.9.4_1: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to build

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2017-01-24 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/432290/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=432290
Log:

>> Building biology/bwa
build started at Tue Jan 24 10:37:32 UTC 2017
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-21 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 21




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.1
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.9.4_1.txz
[110arm64-quarterly-job-21] Installing pkg-1.9.4_1...
[110arm64-quarterly-job-21] Extracting pkg-1.9.4_1: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to build

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2017-01-21 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/431992/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=431992
Log:

>> Building biology/bwa
build started at Sat Jan 21 09:29:56 UTC 2017
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-14 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 14




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.1
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.9.4_1.txz
[110arm64-quarterly-job-14] Installing pkg-1.9.4_1...
[110arm64-quarterly-job-14] Extracting pkg-1.9.4_1: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to build

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2017-01-18 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/431789/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=431789
Log:

>> Building biology/bwa
build started at Thu Jan 19 03:43:57 UTC 2017
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-16 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 16




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.1
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.9.4_1.txz
[110arm64-quarterly-job-16] Installing pkg-1.9.4_1...
[110arm64-quarterly-job-16] Extracting pkg-1.9.4_1: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to build

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2017-01-15 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/431495/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=431495
Log:

>> Building biology/bwa
build started at Sun Jan 15 16:33:35 UTC 2017
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-15 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 15




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.1
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.9.4_1.txz
[110arm64-quarterly-job-15] Installing pkg-1.9.4_1...
[110arm64-quarterly-job-15] Extracting pkg-1.9.4_1: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to build

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2017-01-11 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/431207/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=431207
Log:

>> Building biology/bwa
build started at Thu Jan 12 04:08:36 UTC 2017
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-08 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 08




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.1
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.9.4_1.txz
[110arm64-quarterly-job-08] Installing pkg-1.9.4_1...
[110arm64-quarterly-job-08] Extracting pkg-1.9.4_1: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to build

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2017-01-10 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/431036/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=431036
Log:

>> Building biology/bwa
build started at Tue Jan 10 21:09:02 UTC 2017
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-07 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 07




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.1
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.9.4_1.txz
[110arm64-quarterly-job-07] Installing pkg-1.9.4_1...
[110arm64-quarterly-job-07] Extracting pkg-1.9.4_1: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to build

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2017-01-08 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/430841/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=430841
Log:

>> Building biology/bwa
build started at Sun Jan  8 22:28:20 UTC 2017
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-16 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 16




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.1
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.9.4_1.txz
[110arm64-quarterly-job-16] Installing pkg-1.9.4_1...
[110arm64-quarterly-job-16] Extracting pkg-1.9.4_1: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to build

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2017-01-05 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/430428/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=430428
Log:

>> Building biology/bwa
build started at Thu Jan  5 08:22:39 UTC 2017
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-19 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2017Q1/biology/bwa/Makefile 425878 
2016-11-11 09:07:21Z linimon $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 19




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.1
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.9.4_1.txz
[110arm64-quarterly-job-19] Installing pkg-1.9.4_1...
[110arm64-quarterly-job-19] Extracting pkg-1.9.4_1: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to build

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-12-30 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/429801/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=429801
Log:

>> Building biology/bwa
build started at Sat Dec 31 06:10:55 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-20 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 20




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.8.txz
[110arm64-quarterly-job-20] Installing pkg-1.8.8...
[110arm64-quarterly-job-20] Extracting pkg-1.8.8: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-12-27 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/429509/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=429509
Log:

>> Building biology/bwa
build started at Tue Dec 27 08:12:57 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-24 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 24




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.8.txz
[110arm64-quarterly-job-24] Installing pkg-1.8.8...
[110arm64-quarterly-job-24] Extracting pkg-1.8.8: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-12-25 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/429295/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=429295
Log:

>> Building biology/bwa
build started at Sun Dec 25 20:16:55 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-07 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 07




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.8.txz
[110arm64-quarterly-job-07] Installing pkg-1.8.8...
[110arm64-quarterly-job-07] Extracting pkg-1.8.8: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-12-21 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/429040/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=429040
Log:

>> Building biology/bwa
build started at Thu Dec 22 05:45:24 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-20 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 20




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.8.txz
[110arm64-quarterly-job-20] Installing pkg-1.8.8...
[110arm64-quarterly-job-20] Extracting pkg-1.8.8: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-12-17 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/428796/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=428796
Log:

>> Building biology/bwa
build started at Sun Dec 18 05:59:02 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-06 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 06




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.8.txz
[110arm64-quarterly-job-06] Installing pkg-1.8.8...
[110arm64-quarterly-job-06] Extracting pkg-1.8.8: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-12-16 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/428670/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=428670
Log:

>> Building biology/bwa
build started at Sat Dec 17 07:36:25 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-16 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 16




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.8.txz
[110arm64-quarterly-job-16] Installing pkg-1.8.8...
[110arm64-quarterly-job-16] Extracting pkg-1.8.8: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-12-13 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/428410/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=428410
Log:

>> Building biology/bwa
build started at Tue Dec 13 13:50:10 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-22 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 22




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.8.txz
[110arm64-quarterly-job-22] Installing pkg-1.8.8...
[110arm64-quarterly-job-22] Extracting pkg-1.8.8: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-12-09 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/428211/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=428211
Log:

>> Building biology/bwa
build started at Sat Dec 10 05:52:53 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-13 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 13




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.8.txz
[110arm64-quarterly-job-13] Installing pkg-1.8.8...
[110arm64-quarterly-job-13] Extracting pkg-1.8.8: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-12-07 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/428080/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=428080
Log:

>> Building biology/bwa
build started at Thu Dec  8 06:46:29 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-23 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 23




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.8.txz
[110arm64-quarterly-job-23] Installing pkg-1.8.8...
[110arm64-quarterly-job-23] Extracting pkg-1.8.8: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-12-05 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/427878/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=427878
Log:

>> Building biology/bwa
build started at Tue Dec  6 06:03:14 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-16 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 16




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.8.txz
[110arm64-quarterly-job-16] Installing pkg-1.8.8...
[110arm64-quarterly-job-16] Extracting pkg-1.8.8: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-12-03 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/427583/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=427583
Log:

>> Building biology/bwa
build started at Sat Dec  3 14:36:48 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-14 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 14




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.8.txz
[110arm64-quarterly-job-14] Installing pkg-1.8.8...
[110arm64-quarterly-job-14] Extracting pkg-1.8.8: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-12-01 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/427426/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=427426
Log:

>> Building biology/bwa
build started at Thu Dec  1 07:41:43 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-04 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 04




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.8.txz
[110arm64-quarterly-job-04] Installing pkg-1.8.8...
[110arm64-quarterly-job-04] Extracting pkg-1.8.8: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-11-28 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/427352/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=427352
Log:

>> Building biology/bwa
build started at Tue Nov 29 05:44:08 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-20 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 20




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.8.txz
[110arm64-quarterly-job-20] Installing pkg-1.8.8...
[110arm64-quarterly-job-20] Extracting pkg-1.8.8: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-11-25 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/427114/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=427114
Log:

>> Building biology/bwa
build started at Sat Nov 26 05:53:46 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-09 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 09




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.8.txz
[110arm64-quarterly-job-09] Installing pkg-1.8.8...
[110arm64-quarterly-job-09] Extracting pkg-1.8.8: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-11-23 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/426984/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=426984
Log:

>> Building biology/bwa
build started at Thu Nov 24 06:45:59 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-12 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 12




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.8.txz
[110arm64-quarterly-job-12] Installing pkg-1.8.8...
[110arm64-quarterly-job-12] Extracting pkg-1.8.8: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-11-21 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/426753/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=426753
Log:

>> Building biology/bwa
build started at Tue Nov 22 05:57:20 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-20 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 20




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.8.txz
[110arm64-quarterly-job-20] Installing pkg-1.8.8...
[110arm64-quarterly-job-20] Extracting pkg-1.8.8: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-11-18 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/426278/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=426278
Log:

>> Building biology/bwa
build started at Sat Nov 19 05:50:29 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-21 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 21




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.8.txz
[110arm64-quarterly-job-21] Installing pkg-1.8.8...
[110arm64-quarterly-job-21] Extracting pkg-1.8.8: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-11-16 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/426259/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=426259
Log:

>> Building biology/bwa
build started at Thu Nov 17 05:50:52 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-06 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 06




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.8.txz
[110arm64-quarterly-job-06] Installing pkg-1.8.8...
[110arm64-quarterly-job-06] Extracting pkg-1.8.8: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-11-14 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/426125/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=426125
Log:

>> Building biology/bwa
build started at Tue Nov 15 05:50:40 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-18 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 18




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.8.txz
[110arm64-quarterly-job-18] Installing pkg-1.8.8...
[110arm64-quarterly-job-18] Extracting pkg-1.8.8: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-11-12 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/425967/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=425967
Log:

>> Building biology/bwa
build started at Sun Nov 13 05:49:10 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-11 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 11




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.8.txz
[110arm64-quarterly-job-11] Installing pkg-1.8.8...
[110arm64-quarterly-job-11] Extracting pkg-1.8.8: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-11-11 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/425917/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=425917
Log:

>> Building biology/bwa
build started at Sat Nov 12 06:06:46 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-19 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 19




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.8.txz
[110arm64-quarterly-job-19] Installing pkg-1.8.8...
[110arm64-quarterly-job-19] Extracting pkg-1.8.8: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-11-10 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/425787/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=425787
Log:

>> Building biology/bwa
build started at Thu Nov 10 16:02:06 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-18 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.8.txz
[110arm64-quarterly-job-18] Installing pkg-1.8.8...
[110arm64-quarterly-job-18] Extracting pkg-1.8.8: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of bw

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-11-05 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/425439/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=425439
Log:

>> Building biology/bwa
build started at Sun Nov  6 06:00:21 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-16 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.8.txz
[110arm64-quarterly-job-16] Installing pkg-1.8.8...
[110arm64-quarterly-job-16] Extracting pkg-1.8.8: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of bw

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-11-03 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/425154/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=425154
Log:

>> Building biology/bwa
build started at Thu Nov  3 08:39:47 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-21 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.7_3.txz
[110arm64-quarterly-job-21] Installing pkg-1.8.7_3...
[110arm64-quarterly-job-21] Extracting pkg-1.8.7_3: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to build

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-10-29 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/424729/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=424729
Log:

>> Building biology/bwa
build started at Sat Oct 29 08:12:08 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-17 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.7_3.txz
[110arm64-quarterly-job-17] Installing pkg-1.8.7_3...
[110arm64-quarterly-job-17] Extracting pkg-1.8.7_3: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to build

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-10-24 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/424582/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=424582
Log:

>> Building biology/bwa
build started at Tue Oct 25 05:55:43 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-24 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 r306420 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1 r306420
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.7_3.txz
[110arm64-quarterly-job-24] Installing pkg-1.8.7_3...
[110arm64-quarterly-job-24] Extracting pkg-1.8.7_3: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Re

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-10-22 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/424441/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=424441
Log:

>> Building biology/bwa
build started at Sat Oct 22 10:05:21 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-13 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 r306420 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1 r306420
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.7_3.txz
[110arm64-quarterly-job-13] Installing pkg-1.8.7_3...
[110arm64-quarterly-job-13] Extracting pkg-1.8.7_3: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Re

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-10-19 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/424258/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=424258
Log:

>> Building biology/bwa
build started at Thu Oct 20 06:14:26 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-11 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 r306420 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1 r306420
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.7_3.txz
[110arm64-quarterly-job-11] Installing pkg-1.8.7_3...
[110arm64-quarterly-job-11] Extracting pkg-1.8.7_3: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Re

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-10-17 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/423994/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=423994
Log:

>> Building biology/bwa
build started at Tue Oct 18 05:52:53 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-15 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 r306420 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1 r306420
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.7_3.txz
[110arm64-quarterly-job-15] Installing pkg-1.8.7_3...
[110arm64-quarterly-job-15] Extracting pkg-1.8.7_3: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Re

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-10-13 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/423819/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=423819
Log:

>> Building biology/bwa
build started at Fri Oct 14 00:04:11 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-13 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 r306420 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1 r306420
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.7_3.txz
[110arm64-quarterly-job-13] Installing pkg-1.8.7_3...
[110arm64-quarterly-job-13] Extracting pkg-1.8.7_3: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Re

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-10-10 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/423629/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=423629
Log:

>> Building biology/bwa
build started at Tue Oct 11 06:40:32 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-23 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 r306420 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1 r306420
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.7_3.txz
[110arm64-quarterly-job-23] Installing pkg-1.8.7_3...
[110arm64-quarterly-job-23] Extracting pkg-1.8.7_3: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Re

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-10-09 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/423448/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=423448
Log:

>> Building biology/bwa
build started at Sun Oct  9 20:41:27 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-14 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 r306420 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q4/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1 r306420
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.7_3.txz
[110arm64-quarterly-job-14] Installing pkg-1.8.7_3...
[110arm64-quarterly-job-14] Extracting pkg-1.8.7_3: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Re

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-10-02 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q3/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/422993/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=422993
Log:

>> Building biology/bwa
build started at Mon Oct  3 06:36:55 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-12 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 r306420 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q3/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1 r306420
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.7_1.txz
[110arm64-quarterly-job-12] Installing pkg-1.8.7_1...
[110arm64-quarterly-job-12] Extracting pkg-1.8.7_1: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Re

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-09-25 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q3/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/422689/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=422689
Log:

>> Building biology/bwa
build started at Mon Sep 26 06:34:48 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-09 11.0-RELEASE FreeBSD 
11.0-RELEASE r306211 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q3/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE r306211
UNAME_r=11.0-RELEASE
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RELEASE
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.7_1.txz
[110arm64-quarterly-job-09] Installing pkg-1.8.7_1...
[110arm64-quarterly-job-09] Extracting pkg-1.8.7_1: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to buil

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-09-18 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q3/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/422268/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=422268
Log:

>> Building biology/bwa
build started at Mon Sep 19 06:10:50 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-11 11.0-RC3 FreeBSD 11.0-RC3 
r305786 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q3/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RC3 r305786
UNAME_r=11.0-RC3
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RC3
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.7_1.txz
[110arm64-quarterly-job-11] Installing pkg-1.8.7_1...
[110arm64-quarterly-job-11] Extracting pkg-1.8.7_1: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of bwa-0.7.9a

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-09-11 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q3/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/421620/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=421620
Log:

>> Building biology/bwa
build started at Mon Sep 12 00:25:22 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-10 11.0-RC2 FreeBSD 11.0-RC2 
r305551 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q3/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RC2 r305551
UNAME_r=11.0-RC2
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=screen
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RC2
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.7_1.txz
[110arm64-quarterly-job-10] Installing pkg-1.8.7_1...
[110arm64-quarterly-job-10] Extracting pkg-1.8.7_1: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of bwa-0.7.9

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-09-07 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q3/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/421308/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=421308
Log:

>> Building biology/bwa
build started at Thu Sep  8 05:01:41 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-03 11.0-RC2 FreeBSD 11.0-RC2 
r305427 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q3/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RC2 r305427
UNAME_r=11.0-RC2
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RC2
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.7_1.txz
[110arm64-quarterly-job-03] Installing pkg-1.8.7_1...
[110arm64-quarterly-job-03] Extracting pkg-1.8.7_1: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of bwa-0.7.9a

[package - 110arm64-quarterly][biology/bwa] Failed for bwa-0.7.9a in build

2016-09-01 Thread pkg-fallout


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:  $FreeBSD: branches/2016Q3/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/421132/logs/bwa-0.7.9a.log
Build URL:  
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=421132
Log:

>> Building biology/bwa
build started at Thu Sep  1 10:59:03 UTC 2016
port directory: /usr/ports/biology/bwa
building for: FreeBSD 110arm64-quarterly-job-16 11.0-RC2 FreeBSD 11.0-RC2 
r304729 arm64
maintained by: bacon4...@gmail.com
Makefile ident:  $FreeBSD: branches/2016Q3/biology/bwa/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RC2 r304729
UNAME_r=11.0-RC2
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=screen
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=bwa-0.7.9a
OSREL=11.0
_OSRELEASE=11.0-RC2
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work  
HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -msse2 -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/bwa"
EXAMPLESDIR="share/examples/bwa"
DATADIR="share/bwa"
WWWDIR="www/bwa"
ETCDIR="etc/bwa"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/bwa
DOCSDIR=/usr/local/share/doc/bwa
EXAMPLESDIR=/usr/local/share/examples/bwa
WWWDIR=/usr/local/www/bwa
ETCDIR=/usr/local/etc/bwa
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===
===>  License GPLv3 accepted by the user
===
===
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.7_1.txz
[110arm64-quarterly-job-16] Installing pkg-1.8.7_1...
[110arm64-quarterly-job-16] Extracting pkg-1.8.7_1: .. done
===>   bwa-0.7.9a depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of bwa-0.7.9

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