[package - head-armv6-default][biology/seqan-apps] Failed for seqan-apps-2.2.0_4 in build

2017-09-09 Thread pkg-fallout

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: h2+fbsdpo...@fsfe.org
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: head/biology/seqan-apps/Makefile 441431 2017-05-21 
23:37:34Z linimon $
Log URL:
http://beefy8.nyi.freebsd.org/data/head-armv6-default/p449469_s323330/logs/seqan-apps-2.2.0_4.log
Build URL:  
http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p449469_s323330
Log:

>> Building biology/seqan-apps
build started at Sat Sep  9 16:34:38 UTC 2017
port directory: /usr/ports/biology/seqan-apps
building for: FreeBSD head-armv6-default-job-04 12.0-CURRENT FreeBSD 
12.0-CURRENT 1200043 arm
maintained by: h2+fbsdpo...@fsfe.org
Makefile ident:  $FreeBSD: head/biology/seqan-apps/Makefile 441431 
2017-05-21 23:37:34Z linimon $
Poudriere version: 3.1.19-63-g681eaae7
Host OSVERSION: 1200040
Jail OSVERSION: 1200043
Job Id: 04




!!! Jail is newer than host. (Jail: 1200043, Host: 1200040) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_p=armv6
UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1200043
UNAME_v=FreeBSD 12.0-CURRENT 1200043
UNAME_r=12.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref
QEMU_EMULATING=1
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=seqan-apps-2.2.0_4
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool
MASTERNAME=head-armv6-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.19-63-g681eaae7
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" 
AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" 
GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" 
OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" 
RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" 
SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" 
DESTDIR=/wrkdirs/usr/ports/biology/seqan-apps/work/stage PREFIX=/usr/local  
LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="gcc5" CFLAGS="-O2 -pipe  
-Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing"  CPP="cpp5" CPPFLAGS=""  
LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5" LIBS=""  
CXX="g++5" CXXFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -f
 no-strict-aliasing  -Wl,-rpath=/usr/local/lib/gcc5"  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644" 
 BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
CMAKE_BUILD_TYPE="release"
RM_I386=""
OSREL=12.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/seqan-apps"
EXAMPLESDIR="share/examples/seqan-apps"
DATADIR="share/seqan-apps"
WWWDIR="www/seqan-apps"
ETCDIR="etc/seqan-apps"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/seqan-apps
DOCSDIR=/usr/local/share/doc/seqan-apps
EXAMPLESDIR=/usr/local/share/examples/seqan-apps
WWWDIR=/usr/local/www/seqan-apps
ETCDIR=/usr/local/etc/seqan-apps
--End SUB_LIST--

---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
MACHINE=arm
MACHINE_ARCH=armv6
ARCH=${MACHINE_ARCH}
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE

[package - head-armv6-default][biology/seqan-apps] Failed for seqan-apps-2.2.0_4 in build

2017-09-04 Thread pkg-fallout

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: h2+fbsdpo...@fsfe.org
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: head/biology/seqan-apps/Makefile 441431 2017-05-21 
23:37:34Z linimon $
Log URL:
http://beefy8.nyi.freebsd.org/data/head-armv6-default/p449263_s322995/logs/seqan-apps-2.2.0_4.log
Build URL:  
http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p449263_s322995
Log:

>> Building biology/seqan-apps
build started at Tue Sep  5 02:27:21 UTC 2017
port directory: /usr/ports/biology/seqan-apps
building for: FreeBSD head-armv6-default-job-19 12.0-CURRENT FreeBSD 
12.0-CURRENT 1200043 arm
maintained by: h2+fbsdpo...@fsfe.org
Makefile ident:  $FreeBSD: head/biology/seqan-apps/Makefile 441431 
2017-05-21 23:37:34Z linimon $
Poudriere version: 3.1.19-62-gd8fb0333
Host OSVERSION: 1200040
Jail OSVERSION: 1200043
Job Id: 19




!!! Jail is newer than host. (Jail: 1200043, Host: 1200040) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_p=armv6
UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1200043
UNAME_v=FreeBSD 12.0-CURRENT 1200043
UNAME_r=12.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref
QEMU_EMULATING=1
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=seqan-apps-2.2.0_4
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool
MASTERNAME=head-armv6-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.19-62-gd8fb0333
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" 
AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" 
GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" 
OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" 
RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" 
SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" 
DESTDIR=/wrkdirs/usr/ports/biology/seqan-apps/work/stage PREFIX=/usr/local  
LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="gcc5" CFLAGS="-O2 -pipe  
-Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing"  CPP="cpp5" CPPFLAGS=""  
LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5" LIBS=""  
CXX="g++5" CXXFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -f
 no-strict-aliasing  -Wl,-rpath=/usr/local/lib/gcc5"  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644" 
 BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
CMAKE_BUILD_TYPE="release"
RM_I386=""
OSREL=12.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/seqan-apps"
EXAMPLESDIR="share/examples/seqan-apps"
DATADIR="share/seqan-apps"
WWWDIR="www/seqan-apps"
ETCDIR="etc/seqan-apps"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/seqan-apps
DOCSDIR=/usr/local/share/doc/seqan-apps
EXAMPLESDIR=/usr/local/share/examples/seqan-apps
WWWDIR=/usr/local/www/seqan-apps
ETCDIR=/usr/local/etc/seqan-apps
--End SUB_LIST--

---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
MACHINE=arm
MACHINE_ARCH=armv6
ARCH=${MACHINE_ARCH}
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE

[package - head-armv6-default][biology/seqan-apps] Failed for seqan-apps-2.2.0_4 in build

2017-09-01 Thread pkg-fallout

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: h2+fbsdpo...@fsfe.org
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: head/biology/seqan-apps/Makefile 441431 2017-05-21 
23:37:34Z linimon $
Log URL:
http://beefy8.nyi.freebsd.org/data/head-armv6-default/p449108_s322995/logs/seqan-apps-2.2.0_4.log
Build URL:  
http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p449108_s322995
Log:

>> Building biology/seqan-apps
build started at Sat Sep  2 02:45:54 UTC 2017
port directory: /usr/ports/biology/seqan-apps
building for: FreeBSD head-armv6-default-job-24 12.0-CURRENT FreeBSD 
12.0-CURRENT 1200043 arm
maintained by: h2+fbsdpo...@fsfe.org
Makefile ident:  $FreeBSD: head/biology/seqan-apps/Makefile 441431 
2017-05-21 23:37:34Z linimon $
Poudriere version: 3.1.19-62-gd8fb0333
Host OSVERSION: 1200040
Jail OSVERSION: 1200043
Job Id: 24




!!! Jail is newer than host. (Jail: 1200043, Host: 1200040) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_p=armv6
UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1200043
UNAME_v=FreeBSD 12.0-CURRENT 1200043
UNAME_r=12.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref
QEMU_EMULATING=1
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=seqan-apps-2.2.0_4
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool
MASTERNAME=head-armv6-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.19-62-gd8fb0333
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" 
AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" 
GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" 
OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" 
RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" 
SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" 
DESTDIR=/wrkdirs/usr/ports/biology/seqan-apps/work/stage PREFIX=/usr/local  
LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="gcc5" CFLAGS="-O2 -pipe  
-Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing"  CPP="cpp5" CPPFLAGS=""  
LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5" LIBS=""  
CXX="g++5" CXXFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -f
 no-strict-aliasing  -Wl,-rpath=/usr/local/lib/gcc5"  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644" 
 BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
CMAKE_BUILD_TYPE="release"
RM_I386=""
OSREL=12.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/seqan-apps"
EXAMPLESDIR="share/examples/seqan-apps"
DATADIR="share/seqan-apps"
WWWDIR="www/seqan-apps"
ETCDIR="etc/seqan-apps"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/seqan-apps
DOCSDIR=/usr/local/share/doc/seqan-apps
EXAMPLESDIR=/usr/local/share/examples/seqan-apps
WWWDIR=/usr/local/www/seqan-apps
ETCDIR=/usr/local/etc/seqan-apps
--End SUB_LIST--

---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
MACHINE=arm
MACHINE_ARCH=armv6
ARCH=${MACHINE_ARCH}
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE

[package - head-armv6-default][biology/seqan-apps] Failed for seqan-apps-2.2.0_4 in build

2017-08-31 Thread pkg-fallout

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: h2+fbsdpo...@fsfe.org
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: head/biology/seqan-apps/Makefile 441431 2017-05-21 
23:37:34Z linimon $
Log URL:
http://beefy8.nyi.freebsd.org/data/head-armv6-default/p448889_s322995/logs/seqan-apps-2.2.0_4.log
Build URL:  
http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p448889_s322995
Log:

>> Building biology/seqan-apps
build started at Thu Aug 31 09:43:42 UTC 2017
port directory: /usr/ports/biology/seqan-apps
building for: FreeBSD head-armv6-default-job-11 12.0-CURRENT FreeBSD 
12.0-CURRENT 1200043 arm
maintained by: h2+fbsdpo...@fsfe.org
Makefile ident:  $FreeBSD: head/biology/seqan-apps/Makefile 441431 
2017-05-21 23:37:34Z linimon $
Poudriere version: 3.1.19-62-gd8fb0333
Host OSVERSION: 1200040
Jail OSVERSION: 1200043
Job Id: 11




!!! Jail is newer than host. (Jail: 1200043, Host: 1200040) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_p=armv6
UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1200043
UNAME_v=FreeBSD 12.0-CURRENT 1200043
UNAME_r=12.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref
QEMU_EMULATING=1
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=seqan-apps-2.2.0_4
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool
MASTERNAME=head-armv6-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.19-62-gd8fb0333
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" 
AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" 
GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" 
OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" 
RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" 
SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" 
DESTDIR=/wrkdirs/usr/ports/biology/seqan-apps/work/stage PREFIX=/usr/local  
LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="gcc5" CFLAGS="-O2 -pipe  
-Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing"  CPP="cpp5" CPPFLAGS=""  
LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5" LIBS=""  
CXX="g++5" CXXFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -f
 no-strict-aliasing  -Wl,-rpath=/usr/local/lib/gcc5"  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644" 
 BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
CMAKE_BUILD_TYPE="release"
RM_I386=""
OSREL=12.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/seqan-apps"
EXAMPLESDIR="share/examples/seqan-apps"
DATADIR="share/seqan-apps"
WWWDIR="www/seqan-apps"
ETCDIR="etc/seqan-apps"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/seqan-apps
DOCSDIR=/usr/local/share/doc/seqan-apps
EXAMPLESDIR=/usr/local/share/examples/seqan-apps
WWWDIR=/usr/local/www/seqan-apps
ETCDIR=/usr/local/etc/seqan-apps
--End SUB_LIST--

---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
MACHINE=arm
MACHINE_ARCH=armv6
ARCH=${MACHINE_ARCH}
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE

[package - head-armv6-default][biology/seqan-apps] Failed for seqan-apps-2.2.0_4 in build

2017-08-26 Thread pkg-fallout

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: h2+fbsdpo...@fsfe.org
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: head/biology/seqan-apps/Makefile 441431 2017-05-21 
23:37:34Z linimon $
Log URL:
http://beefy8.nyi.freebsd.org/data/head-armv6-default/p448640_s322824/logs/seqan-apps-2.2.0_4.log
Build URL:  
http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p448640_s322824
Log:

>> Building biology/seqan-apps
build started at Sat Aug 26 08:55:52 UTC 2017
port directory: /usr/ports/biology/seqan-apps
building for: FreeBSD head-armv6-default-job-08 12.0-CURRENT FreeBSD 
12.0-CURRENT 1200041 arm
maintained by: h2+fbsdpo...@fsfe.org
Makefile ident:  $FreeBSD: head/biology/seqan-apps/Makefile 441431 
2017-05-21 23:37:34Z linimon $
Poudriere version: 3.1.19-61-ga8829ba9
Host OSVERSION: 1200040
Jail OSVERSION: 1200041
Job Id: 08




!!! Jail is newer than host. (Jail: 1200041, Host: 1200040) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_p=armv6
UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1200041
UNAME_v=FreeBSD 12.0-CURRENT 1200041
UNAME_r=12.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref
QEMU_EMULATING=1
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=seqan-apps-2.2.0_4
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool
MASTERNAME=head-armv6-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.19-61-ga8829ba9
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" 
AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" 
GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" 
OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" 
RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" 
SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" 
DESTDIR=/wrkdirs/usr/ports/biology/seqan-apps/work/stage PREFIX=/usr/local  
LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="gcc5" CFLAGS="-O2 -pipe  
-Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing"  CPP="cpp5" CPPFLAGS=""  
LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5" LIBS=""  
CXX="g++5" CXXFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -f
 no-strict-aliasing  -Wl,-rpath=/usr/local/lib/gcc5"  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644" 
 BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
CMAKE_BUILD_TYPE="release"
RM_I386=""
OSREL=12.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/seqan-apps"
EXAMPLESDIR="share/examples/seqan-apps"
DATADIR="share/seqan-apps"
WWWDIR="www/seqan-apps"
ETCDIR="etc/seqan-apps"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/seqan-apps
DOCSDIR=/usr/local/share/doc/seqan-apps
EXAMPLESDIR=/usr/local/share/examples/seqan-apps
WWWDIR=/usr/local/www/seqan-apps
ETCDIR=/usr/local/etc/seqan-apps
--End SUB_LIST--

---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
MACHINE=arm
MACHINE_ARCH=armv6
ARCH=${MACHINE_ARCH}
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE

[package - head-armv6-default][biology/seqan-apps] Failed for seqan-apps-2.2.0_4 in build

2017-08-19 Thread pkg-fallout

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: h2+fbsdpo...@fsfe.org
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: head/biology/seqan-apps/Makefile 441431 2017-05-21 
23:37:34Z linimon $
Log URL:
http://beefy8.nyi.freebsd.org/data/head-armv6-default/p448278_s322683/logs/seqan-apps-2.2.0_4.log
Build URL:  
http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p448278_s322683
Log:

>> Building biology/seqan-apps
build started at Sat Aug 19 14:52:16 UTC 2017
port directory: /usr/ports/biology/seqan-apps
building for: FreeBSD head-armv6-default-job-18 12.0-CURRENT FreeBSD 
12.0-CURRENT 1200040 arm
maintained by: h2+fbsdpo...@fsfe.org
Makefile ident:  $FreeBSD: head/biology/seqan-apps/Makefile 441431 
2017-05-21 23:37:34Z linimon $
Poudriere version: 3.1.19-61-ga8829ba9
Host OSVERSION: 1200040
Jail OSVERSION: 1200040
Job Id: 18

---Begin Environment---
SHELL=/bin/csh
UNAME_p=armv6
UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1200040
UNAME_v=FreeBSD 12.0-CURRENT 1200040
UNAME_r=12.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref
QEMU_EMULATING=1
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=seqan-apps-2.2.0_4
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool
MASTERNAME=head-armv6-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.19-61-ga8829ba9
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" 
AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" 
GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" 
OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" 
RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" 
SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" 
DESTDIR=/wrkdirs/usr/ports/biology/seqan-apps/work/stage PREFIX=/usr/local  
LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="gcc5" CFLAGS="-O2 -pipe  
-Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing"  CPP="cpp5" CPPFLAGS=""  
LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5" LIBS=""  
CXX="g++5" CXXFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -f
 no-strict-aliasing  -Wl,-rpath=/usr/local/lib/gcc5"  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644" 
 BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
CMAKE_BUILD_TYPE="release"
RM_I386=""
OSREL=12.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/seqan-apps"
EXAMPLESDIR="share/examples/seqan-apps"
DATADIR="share/seqan-apps"
WWWDIR="www/seqan-apps"
ETCDIR="etc/seqan-apps"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/seqan-apps
DOCSDIR=/usr/local/share/doc/seqan-apps
EXAMPLESDIR=/usr/local/share/examples/seqan-apps
WWWDIR=/usr/local/www/seqan-apps
ETCDIR=/usr/local/etc/seqan-apps
--End SUB_LIST--

---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
MACHINE=arm
MACHINE_ARCH=armv6
ARCH=${MACHINE_ARCH}
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
 /usr/ports/Mk/Scripts/ports_env.sh 
ARCH=armv6
CONFIGURE_MAX_CMD_LEN=262144
OPSYS=FreeBSD
OSREL=12.0
OSVERSION=1200040
PYTHONBASE=/usr/local
UID=0
_JAVA_OS_LIST_

[package - head-armv6-default][biology/seqan-apps] Failed for seqan-apps-2.2.0_4 in build

2017-08-15 Thread pkg-fallout

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: h2+fbsdpo...@fsfe.org
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: head/biology/seqan-apps/Makefile 441431 2017-05-21 
23:37:34Z linimon $
Log URL:
http://beefy8.nyi.freebsd.org/data/head-armv6-default/p447974_s322522/logs/seqan-apps-2.2.0_4.log
Build URL:  
http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p447974_s322522
Log:

>> Building biology/seqan-apps
build started at Tue Aug 15 13:06:41 UTC 2017
port directory: /usr/ports/biology/seqan-apps
building for: FreeBSD head-armv6-default-job-17 12.0-CURRENT FreeBSD 
12.0-CURRENT 1200040 arm
maintained by: h2+fbsdpo...@fsfe.org
Makefile ident:  $FreeBSD: head/biology/seqan-apps/Makefile 441431 
2017-05-21 23:37:34Z linimon $
Poudriere version: 3.1.19-61-ga8829ba9
Host OSVERSION: 1200033
Jail OSVERSION: 1200040
Job Id: 17




!!! Jail is newer than host. (Jail: 1200040, Host: 1200033) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_p=armv6
UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1200040
UNAME_v=FreeBSD 12.0-CURRENT 1200040
UNAME_r=12.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref
QEMU_EMULATING=1
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=seqan-apps-2.2.0_4
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool
MASTERNAME=head-armv6-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.19-61-ga8829ba9
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" 
AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" 
GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" 
OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" 
RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" 
SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" 
DESTDIR=/wrkdirs/usr/ports/biology/seqan-apps/work/stage PREFIX=/usr/local  
LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="gcc5" CFLAGS="-O2 -pipe  
-Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing"  CPP="cpp5" CPPFLAGS=""  
LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5" LIBS=""  
CXX="g++5" CXXFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -f
 no-strict-aliasing  -Wl,-rpath=/usr/local/lib/gcc5"  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644" 
 BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
CMAKE_BUILD_TYPE="release"
RM_I386=""
OSREL=12.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/seqan-apps"
EXAMPLESDIR="share/examples/seqan-apps"
DATADIR="share/seqan-apps"
WWWDIR="www/seqan-apps"
ETCDIR="etc/seqan-apps"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/seqan-apps
DOCSDIR=/usr/local/share/doc/seqan-apps
EXAMPLESDIR=/usr/local/share/examples/seqan-apps
WWWDIR=/usr/local/www/seqan-apps
ETCDIR=/usr/local/etc/seqan-apps
--End SUB_LIST--

---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
MACHINE=arm
MACHINE_ARCH=armv6
ARCH=${MACHINE_ARCH}
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE

[package - head-armv6-default][biology/seqan-apps] Failed for seqan-apps-2.2.0_4 in build

2017-08-10 Thread pkg-fallout

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: h2+fbsdpo...@fsfe.org
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: head/biology/seqan-apps/Makefile 441431 2017-05-21 
23:37:34Z linimon $
Log URL:
http://beefy8.nyi.freebsd.org/data/head-armv6-default/p447660_s322332/logs/seqan-apps-2.2.0_4.log
Build URL:  
http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p447660_s322332
Log:

>> Building biology/seqan-apps
build started at Thu Aug 10 16:56:16 UTC 2017
port directory: /usr/ports/biology/seqan-apps
building for: FreeBSD head-armv6-default-job-02 12.0-CURRENT FreeBSD 
12.0-CURRENT 1200040 arm
maintained by: h2+fbsdpo...@fsfe.org
Makefile ident:  $FreeBSD: head/biology/seqan-apps/Makefile 441431 
2017-05-21 23:37:34Z linimon $
Poudriere version: 3.1.19-61-ga8829ba9
Host OSVERSION: 1200033
Jail OSVERSION: 1200040
Job Id: 02




!!! Jail is newer than host. (Jail: 1200040, Host: 1200033) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_p=armv6
UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1200040
UNAME_v=FreeBSD 12.0-CURRENT 1200040
UNAME_r=12.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref
QEMU_EMULATING=1
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=seqan-apps-2.2.0_4
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool
MASTERNAME=head-armv6-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.19-61-ga8829ba9
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" 
AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" 
GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" 
OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" 
RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" 
SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" 
DESTDIR=/wrkdirs/usr/ports/biology/seqan-apps/work/stage PREFIX=/usr/local  
LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="gcc5" CFLAGS="-O2 -pipe  
-Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing"  CPP="cpp5" CPPFLAGS=""  
LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5" LIBS=""  
CXX="g++5" CXXFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -f
 no-strict-aliasing  -Wl,-rpath=/usr/local/lib/gcc5"  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644" 
 BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
CMAKE_BUILD_TYPE="release"
RM_I386=""
OSREL=12.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/seqan-apps"
EXAMPLESDIR="share/examples/seqan-apps"
DATADIR="share/seqan-apps"
WWWDIR="www/seqan-apps"
ETCDIR="etc/seqan-apps"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/seqan-apps
DOCSDIR=/usr/local/share/doc/seqan-apps
EXAMPLESDIR=/usr/local/share/examples/seqan-apps
WWWDIR=/usr/local/www/seqan-apps
ETCDIR=/usr/local/etc/seqan-apps
--End SUB_LIST--

---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
MACHINE=arm
MACHINE_ARCH=armv6
ARCH=${MACHINE_ARCH}
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE

[package - head-armv6-default][biology/seqan-apps] Failed for seqan-apps-2.2.0_4 in build

2017-08-05 Thread pkg-fallout

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: h2+fbsdpo...@fsfe.org
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: head/biology/seqan-apps/Makefile 441431 2017-05-21 
23:37:34Z linimon $
Log URL:
http://beefy8.nyi.freebsd.org/data/head-armv6-default/p447380_s322073/logs/seqan-apps-2.2.0_4.log
Build URL:  
http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p447380_s322073
Log:

>> Building biology/seqan-apps
build started at Sat Aug  5 07:56:55 UTC 2017
port directory: /usr/ports/biology/seqan-apps
building for: FreeBSD head-armv6-default-job-03 12.0-CURRENT FreeBSD 
12.0-CURRENT 1200040 arm
maintained by: h2+fbsdpo...@fsfe.org
Makefile ident:  $FreeBSD: head/biology/seqan-apps/Makefile 441431 
2017-05-21 23:37:34Z linimon $
Poudriere version: 3.1.19-61-ga8829ba9
Host OSVERSION: 1200033
Jail OSVERSION: 1200040
Job Id: 03




!!! Jail is newer than host. (Jail: 1200040, Host: 1200033) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_p=armv6
UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1200040
UNAME_v=FreeBSD 12.0-CURRENT 1200040
UNAME_r=12.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref
QEMU_EMULATING=1
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=seqan-apps-2.2.0_4
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool
MASTERNAME=head-armv6-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.19-61-ga8829ba9
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" 
AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" 
GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" 
OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" 
RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" 
SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" 
DESTDIR=/wrkdirs/usr/ports/biology/seqan-apps/work/stage PREFIX=/usr/local  
LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="gcc5" CFLAGS="-O2 -pipe  
-Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing"  CPP="cpp5" CPPFLAGS=""  
LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5" LIBS=""  
CXX="g++5" CXXFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -f
 no-strict-aliasing  -Wl,-rpath=/usr/local/lib/gcc5"  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644" 
 BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
CMAKE_BUILD_TYPE="release"
RM_I386=""
OSREL=12.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/seqan-apps"
EXAMPLESDIR="share/examples/seqan-apps"
DATADIR="share/seqan-apps"
WWWDIR="www/seqan-apps"
ETCDIR="etc/seqan-apps"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/seqan-apps
DOCSDIR=/usr/local/share/doc/seqan-apps
EXAMPLESDIR=/usr/local/share/examples/seqan-apps
WWWDIR=/usr/local/www/seqan-apps
ETCDIR=/usr/local/etc/seqan-apps
--End SUB_LIST--

---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
MACHINE=arm
MACHINE_ARCH=armv6
ARCH=${MACHINE_ARCH}
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE

[package - head-armv6-default][biology/seqan-apps] Failed for seqan-apps-2.2.0_4 in build

2017-08-03 Thread pkg-fallout

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: h2+fbsdpo...@fsfe.org
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: head/biology/seqan-apps/Makefile 441431 2017-05-21 
23:37:34Z linimon $
Log URL:
http://beefy8.nyi.freebsd.org/data/head-armv6-default/p447004_s321828/logs/seqan-apps-2.2.0_4.log
Build URL:  
http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p447004_s321828
Log:

>> Building biology/seqan-apps
build started at Thu Aug  3 11:45:49 UTC 2017
port directory: /usr/ports/biology/seqan-apps
building for: FreeBSD head-armv6-default-job-05 12.0-CURRENT FreeBSD 
12.0-CURRENT 1200040 arm
maintained by: h2+fbsdpo...@fsfe.org
Makefile ident:  $FreeBSD: head/biology/seqan-apps/Makefile 441431 
2017-05-21 23:37:34Z linimon $
Poudriere version: 3.1.19-60-g9a710b40
Host OSVERSION: 1200033
Jail OSVERSION: 1200040
Job Id: 05




!!! Jail is newer than host. (Jail: 1200040, Host: 1200033) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_p=armv6
UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1200040
UNAME_v=FreeBSD 12.0-CURRENT 1200040
UNAME_r=12.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref
QEMU_EMULATING=1
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=seqan-apps-2.2.0_4
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool
MASTERNAME=head-armv6-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.19-60-g9a710b40
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" 
AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" 
GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" 
OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" 
RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" 
SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" 
DESTDIR=/wrkdirs/usr/ports/biology/seqan-apps/work/stage PREFIX=/usr/local  
LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="gcc5" CFLAGS="-O2 -pipe  
-Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing"  CPP="cpp5" CPPFLAGS=""  
LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5" LIBS=""  
CXX="g++5" CXXFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -f
 no-strict-aliasing  -Wl,-rpath=/usr/local/lib/gcc5"  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644" 
 BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
CMAKE_BUILD_TYPE="release"
RM_I386=""
OSREL=12.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/seqan-apps"
EXAMPLESDIR="share/examples/seqan-apps"
DATADIR="share/seqan-apps"
WWWDIR="www/seqan-apps"
ETCDIR="etc/seqan-apps"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/seqan-apps
DOCSDIR=/usr/local/share/doc/seqan-apps
EXAMPLESDIR=/usr/local/share/examples/seqan-apps
WWWDIR=/usr/local/www/seqan-apps
ETCDIR=/usr/local/etc/seqan-apps
--End SUB_LIST--

---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
MACHINE=arm
MACHINE_ARCH=armv6
ARCH=${MACHINE_ARCH}
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE

[package - head-armv6-default][biology/seqan-apps] Failed for seqan-apps-2.2.0_4 in build

2017-07-27 Thread pkg-fallout

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: h2+fbsdpo...@fsfe.org
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: head/biology/seqan-apps/Makefile 441431 2017-05-21 
23:37:34Z linimon $
Log URL:
http://beefy8.nyi.freebsd.org/data/head-armv6-default/p446550_s321446/logs/seqan-apps-2.2.0_4.log
Build URL:  
http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p446550_s321446
Log:

>> Building biology/seqan-apps
build started at Thu Jul 27 11:01:45 UTC 2017
port directory: /usr/ports/biology/seqan-apps
building for: FreeBSD head-armv6-default-job-10 12.0-CURRENT FreeBSD 
12.0-CURRENT 1200039 arm
maintained by: h2+fbsdpo...@fsfe.org
Makefile ident:  $FreeBSD: head/biology/seqan-apps/Makefile 441431 
2017-05-21 23:37:34Z linimon $
Poudriere version: 3.1.19-50-g116395ee
Host OSVERSION: 1200033
Jail OSVERSION: 1200039
Job Id: 10




!!! Jail is newer than host. (Jail: 1200039, Host: 1200033) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_p=armv6
UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1200039
UNAME_v=FreeBSD 12.0-CURRENT 1200039
UNAME_r=12.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref
QEMU_EMULATING=1
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=seqan-apps-2.2.0_4
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool
MASTERNAME=head-armv6-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.19-50-g116395ee
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" 
AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" 
GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" 
OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" 
RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" 
SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" 
DESTDIR=/wrkdirs/usr/ports/biology/seqan-apps/work/stage PREFIX=/usr/local  
LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="gcc5" CFLAGS="-O2 -pipe  
-Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing"  CPP="cpp5" CPPFLAGS=""  
LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5" LIBS=""  
CXX="g++5" CXXFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -f
 no-strict-aliasing  -Wl,-rpath=/usr/local/lib/gcc5"  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644" 
 BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
CMAKE_BUILD_TYPE="release"
RM_I386=""
OSREL=12.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/seqan-apps"
EXAMPLESDIR="share/examples/seqan-apps"
DATADIR="share/seqan-apps"
WWWDIR="www/seqan-apps"
ETCDIR="etc/seqan-apps"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/seqan-apps
DOCSDIR=/usr/local/share/doc/seqan-apps
EXAMPLESDIR=/usr/local/share/examples/seqan-apps
WWWDIR=/usr/local/www/seqan-apps
ETCDIR=/usr/local/etc/seqan-apps
--End SUB_LIST--

---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
MACHINE=arm
MACHINE_ARCH=armv6
ARCH=${MACHINE_ARCH}
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE

[package - head-armv6-default][biology/seqan-apps] Failed for seqan-apps-2.2.0_4 in build

2017-07-22 Thread pkg-fallout

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: h2+fbsdpo...@fsfe.org
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: head/biology/seqan-apps/Makefile 441431 2017-05-21 
23:37:34Z linimon $
Log URL:
http://beefy8.nyi.freebsd.org/data/head-armv6-default/p446242_s321261/logs/seqan-apps-2.2.0_4.log
Build URL:  
http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p446242_s321261
Log:

>> Building biology/seqan-apps
build started at Sat Jul 22 10:02:50 UTC 2017
port directory: /usr/ports/biology/seqan-apps
building for: FreeBSD head-armv6-default-job-02 12.0-CURRENT FreeBSD 
12.0-CURRENT 1200038 arm
maintained by: h2+fbsdpo...@fsfe.org
Makefile ident:  $FreeBSD: head/biology/seqan-apps/Makefile 441431 
2017-05-21 23:37:34Z linimon $
Poudriere version: 3.1.19-49-g8b92d9a0
Host OSVERSION: 1200033
Jail OSVERSION: 1200038
Job Id: 02




!!! Jail is newer than host. (Jail: 1200038, Host: 1200033) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_p=armv6
UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1200038
UNAME_v=FreeBSD 12.0-CURRENT 1200038
UNAME_r=12.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref
QEMU_EMULATING=1
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=seqan-apps-2.2.0_4
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool
MASTERNAME=head-armv6-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.19-49-g8b92d9a0
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" 
AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" 
GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" 
OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" 
RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" 
SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" 
DESTDIR=/wrkdirs/usr/ports/biology/seqan-apps/work/stage PREFIX=/usr/local  
LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="gcc5" CFLAGS="-O2 -pipe  
-Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing"  CPP="cpp5" CPPFLAGS=""  
LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5" LIBS=""  
CXX="g++5" CXXFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -f
 no-strict-aliasing  -Wl,-rpath=/usr/local/lib/gcc5"  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644" 
 BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
CMAKE_BUILD_TYPE="release"
RM_I386=""
OSREL=12.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/seqan-apps"
EXAMPLESDIR="share/examples/seqan-apps"
DATADIR="share/seqan-apps"
WWWDIR="www/seqan-apps"
ETCDIR="etc/seqan-apps"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/seqan-apps
DOCSDIR=/usr/local/share/doc/seqan-apps
EXAMPLESDIR=/usr/local/share/examples/seqan-apps
WWWDIR=/usr/local/www/seqan-apps
ETCDIR=/usr/local/etc/seqan-apps
--End SUB_LIST--

---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
MACHINE=arm
MACHINE_ARCH=armv6
ARCH=${MACHINE_ARCH}
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE

[package - head-armv6-default][biology/seqan-apps] Failed for seqan-apps-2.2.0_4 in build

2017-05-25 Thread pkg-fallout

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: h2+fbsdpo...@fsfe.org
Last committer: lini...@freebsd.org
Ident:  $FreeBSD: head/biology/seqan-apps/Makefile 441431 2017-05-21 
23:37:34Z linimon $
Log URL:
http://beefy8.nyi.freebsd.org/data/head-armv6-default/p441628_s318432/logs/seqan-apps-2.2.0_4.log
Build URL:  
http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p441628_s318432
Log:

>> Building biology/seqan-apps
build started at Thu May 25 09:00:32 UTC 2017
port directory: /usr/ports/biology/seqan-apps
building for: FreeBSD head-armv6-default-job-07 12.0-CURRENT FreeBSD 
12.0-CURRENT r318432 arm
maintained by: h2+fbsdpo...@fsfe.org
Makefile ident:  $FreeBSD: head/biology/seqan-apps/Makefile 441431 
2017-05-21 23:37:34Z linimon $
Poudriere version: 3.1.17-14-gb21fc4aa
Host OSVERSION: 1200028
Jail OSVERSION: 1200030
Job Id: 07




!!! Jail is newer than host. (Jail: 1200030, Host: 1200028) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_p=armv6
UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1200030
UNAME_v=FreeBSD 12.0-CURRENT r318432
UNAME_r=12.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref
QEMU_EMULATING=1
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=seqan-apps-2.2.0_4
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool
MASTERNAME=head-armv6-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.17-14-gb21fc4aa
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" 
AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" 
GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" 
OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" 
RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" 
SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local  
LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="gcc5" CFLAGS="-O2 -pipe  
-Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing"  CPP="cpp5" CPPFLAGS=""  
LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5" LIBS=""  
CXX="g++5" CXXFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 
-fno-strict-aliasing  -Wl,-rpath=/usr/local/lib/gcc5"  MANP
 REFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
CMAKE_BUILD_TYPE="release"
RM_I386=""
OSREL=12.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/seqan-apps"
EXAMPLESDIR="share/examples/seqan-apps"
DATADIR="share/seqan-apps"
WWWDIR="www/seqan-apps"
ETCDIR="etc/seqan-apps"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/seqan-apps
DOCSDIR=/usr/local/share/doc/seqan-apps
EXAMPLESDIR=/usr/local/share/examples/seqan-apps
WWWDIR=/usr/local/www/seqan-apps
ETCDIR=/usr/local/etc/seqan-apps
--End SUB_LIST--

---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
MACHINE=arm
MACHINE_ARCH=armv6
ARCH=${MACHINE_ARCH}
 /usr/local/etc/poudriere.d/make.conf 
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
 /usr/ports/Mk/Scripts/ports_env.sh 
ARCH=armv6
CONFIGURE_MAX_CMD_LEN=262144
OPSYS=FreeBSD
OSREL=12.0
OSVERSION=1200030
PYTHONBA