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Maintainer: po...@freebsd.org Last committer: b...@freebsd.org Ident: $FreeBSD: head/biology/lamarc/Makefile 397077 2015-09-16 19:51:26Z bapt $ Log URL: http://beefy7.nyi.freebsd.org/data/head-mips-default/p402431_s291353/logs/lamarc-2.1.8_1,1.log Build URL: http://beefy7.nyi.freebsd.org/build.html?mastername=head-mips-default&build=p402431_s291353 Log: ====>> Building biology/lamarc build started at Thu Nov 26 10:27:06 UTC 2015 port directory: /usr/ports/biology/lamarc building for: FreeBSD head-mips-default-job-08 11.0-CURRENT FreeBSD 11.0-CURRENT r291353 mips maintained by: po...@freebsd.org Makefile ident: $FreeBSD: head/biology/lamarc/Makefile 397077 2015-09-16 19:51:26Z bapt $ Poudriere version: 3.1.10 Host OSVERSION: 1100085 Jail OSVERSION: 1100090 !!! Jail is newer than host. (Jail: 1100090, Host: 1100085) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=mips UNAME_m=mips ABI_FILE=/usr/lib/crt1.o OSVERSION=1100090 UNAME_v=FreeBSD 11.0-CURRENT r291353 UNAME_r=11.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM=screen QEMU_EMULATING=1 MASTERMNT=/usr/local/poudriere/data/.m/head-mips-default/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=lamarc-2.1.8_1,1 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/head-mips-default/ref/.p/pool MASTERNAME=head-mips-default SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.10 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for lamarc-2.1.8_1,1: DOCS=on: Build and/or install documentation WXGTK=off: wxGTK GUI toolkit support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --disable-converter --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/lamarc/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/lamarc/work HOME=/wrkdirs/usr/ports/biology/lamarc/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/lamarc/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/lamarc/work HOME=/wrkdirs/usr/ports/biology/lamarc/work TMPDIR="/tmp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0 -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/lamarc" EXAMPLESDIR="share/examples/lamarc" DATADIR="share/lamarc" WWWDIR="www/lamarc" ETCDIR="etc/lamarc" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/lamarc DOCSDIR=/usr/local/share/doc/lamarc EXAMPLESDIR=/usr/local/share/examples/lamarc WWWDIR=/usr/local/www/lamarc ETCDIR=/usr/local/etc/lamarc --End SUB_LIST-- ---Begin make.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm <snip> mv -f .deps/lamarc-undoredochain.Tpo .deps/lamarc-undoredochain.Po /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I./config -DLAMARC_COMPILE_LINUX -DNDEBUG -Wall -Wextra -Wno-unused -I ./config -I ./config -I ./src/bayeslike -I ./src/control -I ./src/conversion -I ./src/convErr -I ./src/convModel -I ./src/convParse -I ./src/convStrings -I ./src/convUtil -I ./src/datalike -I ./src/force -I ./src/guiconv -I ./src/guiutil -I ./src/lamarcmenus -I ./src/menu -I ./src/postlike -I ./src/report -I ./src/tools -I ./src/tree -I ./src/ui_interface -I ./src/ui_util -I ./src/ui_vars -I ./src/xml -I ./boost -I ./resources -I ./tinyxml -DTIXML_USE_STL -O2 -pipe -G0 -fno-strict-aliasing -MT lamarc-report_strings.o -MD -MP -MF .deps/lamarc-report_strings.Tpo -c -o lamarc-report_strings.o `test -f 'src/ui_vars/report_strings.cpp' || echo './'`src/ui_vars/report_strings.cpp mv -f .deps/lamarc-report_strings.Tpo .deps/lamarc-report_strings.Po /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I./config -DLAMARC_COMPILE_LINUX -DNDEBUG -Wall -Wextra -Wno-unused -I ./config -I ./config -I ./src/bayeslike -I ./src/control -I ./src/conversion -I ./src/convErr -I ./src/convModel -I ./src/convParse -I ./src/convStrings -I ./src/convUtil -I ./src/datalike -I ./src/force -I ./src/guiconv -I ./src/guiutil -I ./src/lamarcmenus -I ./src/menu -I ./src/postlike -I ./src/report -I ./src/tools -I ./src/tree -I ./src/ui_interface -I ./src/ui_util -I ./src/ui_vars -I ./src/xml -I ./boost -I ./resources -I ./tinyxml -DTIXML_USE_STL -O2 -pipe -G0 -fno-strict-aliasing -MT lamarc-ui_vars.o -MD -MP -MF .deps/lamarc-ui_vars.Tpo -c -o lamarc-ui_vars.o `test -f 'src/ui_vars/ui_vars.cpp' || echo './'`src/ui_vars/ui_vars.cpp mv -f .deps/lamarc-ui_vars.Tpo .deps/lamarc-ui_vars.Po /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I./config -DLAMARC_COMPILE_LINUX -DNDEBUG -Wall -Wextra -Wno-unused -I ./config -I ./config -I ./src/bayeslike -I ./src/control -I ./src/conversion -I ./src/convErr -I ./src/convModel -I ./src/convParse -I ./src/convStrings -I ./src/convUtil -I ./src/datalike -I ./src/force -I ./src/guiconv -I ./src/guiutil -I ./src/lamarcmenus -I ./src/menu -I ./src/postlike -I ./src/report -I ./src/tools -I ./src/tree -I ./src/ui_interface -I ./src/ui_util -I ./src/ui_vars -I ./src/xml -I ./boost -I ./resources -I ./tinyxml -DTIXML_USE_STL -O2 -pipe -G0 -fno-strict-aliasing -MT lamarc-ui_vars_chainparams.o -MD -MP -MF .deps/lamarc-ui_vars_chainparams.Tpo -c -o lamarc-ui_vars_chainparams.o `test -f 'src/ui_vars/ui_vars_chainparams.cpp' || echo './'`src/ui_vars/ui_vars_chainparams.cpp mv -f .deps/lamarc-ui_vars_chainparams.Tpo .deps/lamarc-ui_vars_chainparams.Po /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I./config -DLAMARC_COMPILE_LINUX -DNDEBUG -Wall -Wextra -Wno-unused -I ./config -I ./config -I ./src/bayeslike -I ./src/control -I ./src/conversion -I ./src/convErr -I ./src/convModel -I ./src/convParse -I ./src/convStrings -I ./src/convUtil -I ./src/datalike -I ./src/force -I ./src/guiconv -I ./src/guiutil -I ./src/lamarcmenus -I ./src/menu -I ./src/postlike -I ./src/report -I ./src/tools -I ./src/tree -I ./src/ui_interface -I ./src/ui_util -I ./src/ui_vars -I ./src/xml -I ./boost -I ./resources -I ./tinyxml -DTIXML_USE_STL -O2 -pipe -G0 -fno-strict-aliasing -MT lamarc-ui_vars_component.o -MD -MP -MF .deps/lamarc-ui_vars_component.Tpo -c -o lamarc-ui_vars_component.o `test -f 'src/ui_vars/ui_vars_component.cpp' || echo './'`src/ui_vars/ui_vars_component.cpp mv -f .deps/lamarc-ui_vars_component.Tpo .deps/lamarc-ui_vars_component.Po /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I./config -DLAMARC_COMPILE_LINUX -DNDEBUG -Wall -Wextra -Wno-unused -I ./config -I ./config -I ./src/bayeslike -I ./src/control -I ./src/conversion -I ./src/convErr -I ./src/convModel -I ./src/convParse -I ./src/convStrings -I ./src/convUtil -I ./src/datalike -I ./src/force -I ./src/guiconv -I ./src/guiutil -I ./src/lamarcmenus -I ./src/menu -I ./src/postlike -I ./src/report -I ./src/tools -I ./src/tree -I ./src/ui_interface -I ./src/ui_util -I ./src/ui_vars -I ./src/xml -I ./boost -I ./resources -I ./tinyxml -DTIXML_USE_STL -O2 -pipe -G0 -fno-strict-aliasing -MT lamarc-ui_vars_datamodel.o -MD -MP -MF .deps/lamarc-ui_vars_datamodel.Tpo -c -o lamarc-ui_vars_datamodel.o `test -f 'src/ui_vars/ui_vars_datamodel.cpp' || echo './'`src/ui_vars/ui_vars_datamodel.cpp mv -f .deps/lamarc-ui_vars_datamodel.Tpo .deps/lamarc-ui_vars_datamodel.Po /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I./config -DLAMARC_COMPILE_LINUX -DNDEBUG -Wall -Wextra -Wno-unused -I ./config -I ./config -I ./src/bayeslike -I ./src/control -I ./src/conversion -I ./src/convErr -I ./src/convModel -I ./src/convParse -I ./src/convStrings -I ./src/convUtil -I ./src/datalike -I ./src/force -I ./src/guiconv -I ./src/guiutil -I ./src/lamarcmenus -I ./src/menu -I ./src/postlike -I ./src/report -I ./src/tools -I ./src/tree -I ./src/ui_interface -I ./src/ui_util -I ./src/ui_vars -I ./src/xml -I ./boost -I ./resources -I ./tinyxml -DTIXML_USE_STL -O2 -pipe -G0 -fno-strict-aliasing -MT lamarc-ui_vars_datapackplus.o -MD -MP -MF .deps/lamarc-ui_vars_datapackplus.Tpo -c -o lamarc-ui_vars_datapackplus.o `test -f 'src/ui_vars/ui_vars_datapackplus.cpp' || echo './'`src/ui_vars/ui_vars_datapackplus.cpp mv -f .deps/lamarc-ui_vars_datapackplus.Tpo .deps/lamarc-ui_vars_datapackplus.Po /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I./config -DLAMARC_COMPILE_LINUX -DNDEBUG -Wall -Wextra -Wno-unused -I ./config -I ./config -I ./src/bayeslike -I ./src/control -I ./src/conversion -I ./src/convErr -I ./src/convModel -I ./src/convParse -I ./src/convStrings -I ./src/convUtil -I ./src/datalike -I ./src/force -I ./src/guiconv -I ./src/guiutil -I ./src/lamarcmenus -I ./src/menu -I ./src/postlike -I ./src/report -I ./src/tools -I ./src/tree -I ./src/ui_interface -I ./src/ui_util -I ./src/ui_vars -I ./src/xml -I ./boost -I ./resources -I ./tinyxml -DTIXML_USE_STL -O2 -pipe -G0 -fno-strict-aliasing -MT lamarc-ui_vars_forces.o -MD -MP -MF .deps/lamarc-ui_vars_forces.Tpo -c -o lamarc-ui_vars_forces.o `test -f 'src/ui_vars/ui_vars_forces.cpp' || echo './'`src/ui_vars/ui_vars_forces.cpp mv -f .deps/lamarc-ui_vars_forces.Tpo .deps/lamarc-ui_vars_forces.Po /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I./config -DLAMARC_COMPILE_LINUX -DNDEBUG -Wall -Wextra -Wno-unused -I ./config -I ./config -I ./src/bayeslike -I ./src/control -I ./src/conversion -I ./src/convErr -I ./src/convModel -I ./src/convParse -I ./src/convStrings -I ./src/convUtil -I ./src/datalike -I ./src/force -I ./src/guiconv -I ./src/guiutil -I ./src/lamarcmenus -I ./src/menu -I ./src/postlike -I ./src/report -I ./src/tools -I ./src/tree -I ./src/ui_interface -I ./src/ui_util -I ./src/ui_vars -I ./src/xml -I ./boost -I ./resources -I ./tinyxml -DTIXML_USE_STL -O2 -pipe -G0 -fno-strict-aliasing -MT lamarc-ui_vars_prior.o -MD -MP -MF .deps/lamarc-ui_vars_prior.Tpo -c -o lamarc-ui_vars_prior.o `test -f 'src/ui_vars/ui_vars_prior.cpp' || echo './'`src/ui_vars/ui_vars_prior.cpp mv -f .deps/lamarc-ui_vars_prior.Tpo .deps/lamarc-ui_vars_prior.Po /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I./config -DLAMARC_COMPILE_LINUX -DNDEBUG -Wall -Wextra -Wno-unused -I ./config -I ./config -I ./src/bayeslike -I ./src/control -I ./src/conversion -I ./src/convErr -I ./src/convModel -I ./src/convParse -I ./src/convStrings -I ./src/convUtil -I ./src/datalike -I ./src/force -I ./src/guiconv -I ./src/guiutil -I ./src/lamarcmenus -I ./src/menu -I ./src/postlike -I ./src/report -I ./src/tools -I ./src/tree -I ./src/ui_interface -I ./src/ui_util -I ./src/ui_vars -I ./src/xml -I ./boost -I ./resources -I ./tinyxml -DTIXML_USE_STL -O2 -pipe -G0 -fno-strict-aliasing -MT lamarc-ui_vars_traitmodels.o -MD -MP -MF .deps/lamarc-ui_vars_traitmodels.Tpo -c -o lamarc-ui_vars_traitmodels.o `test -f 'src/ui_vars/ui_vars_traitmodels.cpp' || echo './'`src/ui_vars/ui_vars_traitmodels.cpp mv -f .deps/lamarc-ui_vars_traitmodels.Tpo .deps/lamarc-ui_vars_traitmodels.Po /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I./config -DLAMARC_COMPILE_LINUX -DNDEBUG -Wall -Wextra -Wno-unused -I ./config -I ./config -I ./src/bayeslike -I ./src/control -I ./src/conversion -I ./src/convErr -I ./src/convModel -I ./src/convParse -I ./src/convStrings -I ./src/convUtil -I ./src/datalike -I ./src/force -I ./src/guiconv -I ./src/guiutil -I ./src/lamarcmenus -I ./src/menu -I ./src/postlike -I ./src/report -I ./src/tools -I ./src/tree -I ./src/ui_interface -I ./src/ui_util -I ./src/ui_vars -I ./src/xml -I ./boost -I ./resources -I ./tinyxml -DTIXML_USE_STL -O2 -pipe -G0 -fno-strict-aliasing -MT lamarc-ui_vars_userparams.o -MD -MP -MF .deps/lamarc-ui_vars_userparams.Tpo -c -o lamarc-ui_vars_userparams.o `test -f 'src/ui_vars/ui_vars_userparams.cpp' || echo './'`src/ui_vars/ui_vars_userparams.cpp mv -f .deps/lamarc-ui_vars_userparams.Tpo .deps/lamarc-ui_vars_userparams.Po /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I./config -DLAMARC_COMPILE_LINUX -DNDEBUG -Wall -Wextra -Wno-unused -I ./config -I ./config -I ./src/bayeslike -I ./src/control -I ./src/conversion -I ./src/convErr -I ./src/convModel -I ./src/convParse -I ./src/convStrings -I ./src/convUtil -I ./src/datalike -I ./src/force -I ./src/guiconv -I ./src/guiutil -I ./src/lamarcmenus -I ./src/menu -I ./src/postlike -I ./src/report -I ./src/tools -I ./src/tree -I ./src/ui_interface -I ./src/ui_util -I ./src/ui_vars -I ./src/xml -I ./boost -I ./resources -I ./tinyxml -DTIXML_USE_STL -O2 -pipe -G0 -fno-strict-aliasing -MT lamarc-lamarcschema.o -MD -MP -MF .deps/lamarc-lamarcschema.Tpo -c -o lamarc-lamarcschema.o `test -f 'src/xml/lamarcschema.cpp' || echo './'`src/xml/lamarcschema.cpp mv -f .deps/lamarc-lamarcschema.Tpo .deps/lamarc-lamarcschema.Po /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I./config -DLAMARC_COMPILE_LINUX -DNDEBUG -Wall -Wextra -Wno-unused -I ./config -I ./config -I ./src/bayeslike -I ./src/control -I ./src/conversion -I ./src/convErr -I ./src/convModel -I ./src/convParse -I ./src/convStrings -I ./src/convUtil -I ./src/datalike -I ./src/force -I ./src/guiconv -I ./src/guiutil -I ./src/lamarcmenus -I ./src/menu -I ./src/postlike -I ./src/report -I ./src/tools -I ./src/tree -I ./src/ui_interface -I ./src/ui_util -I ./src/ui_vars -I ./src/xml -I ./boost -I ./resources -I ./tinyxml -DTIXML_USE_STL -O2 -pipe -G0 -fno-strict-aliasing -MT lamarc-parsetreetodata.o -MD -MP -MF .deps/lamarc-parsetreetodata.Tpo -c -o lamarc-parsetreetodata.o `test -f 'src/xml/parsetreetodata.cpp' || echo './'`src/xml/parsetreetodata.cpp mv -f .deps/lamarc-parsetreetodata.Tpo .deps/lamarc-parsetreetodata.Po /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I./config -DLAMARC_COMPILE_LINUX -DNDEBUG -Wall -Wextra -Wno-unused -I ./config -I ./config -I ./src/bayeslike -I ./src/control -I ./src/conversion -I ./src/convErr -I ./src/convModel -I ./src/convParse -I ./src/convStrings -I ./src/convUtil -I ./src/datalike -I ./src/force -I ./src/guiconv -I ./src/guiutil -I ./src/lamarcmenus -I ./src/menu -I ./src/postlike -I ./src/report -I ./src/tools -I ./src/tree -I ./src/ui_interface -I ./src/ui_util -I ./src/ui_vars -I ./src/xml -I ./boost -I ./resources -I ./tinyxml -DTIXML_USE_STL -O2 -pipe -G0 -fno-strict-aliasing -MT lamarc-parsetreetosettings.o -MD -MP -MF .deps/lamarc-parsetreetosettings.Tpo -c -o lamarc-parsetreetosettings.o `test -f 'src/xml/parsetreetosettings.cpp' || echo './'`src/xml/parsetreetosettings.cpp mv -f .deps/lamarc-parsetreetosettings.Tpo .deps/lamarc-parsetreetosettings.Po /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I./config -DLAMARC_COMPILE_LINUX -DNDEBUG -Wall -Wextra -Wno-unused -I ./config -I ./config -I ./src/bayeslike -I ./src/control -I ./src/conversion -I ./src/convErr -I ./src/convModel -I ./src/convParse -I ./src/convStrings -I ./src/convUtil -I ./src/datalike -I ./src/force -I ./src/guiconv -I ./src/guiutil -I ./src/lamarcmenus -I ./src/menu -I ./src/postlike -I ./src/report -I ./src/tools -I ./src/tree -I ./src/ui_interface -I ./src/ui_util -I ./src/ui_vars -I ./src/xml -I ./boost -I ./resources -I ./tinyxml -DTIXML_USE_STL -O2 -pipe -G0 -fno-strict-aliasing -MT lamarc-parsetreewalker.o -MD -MP -MF .deps/lamarc-parsetreewalker.Tpo -c -o lamarc-parsetreewalker.o `test -f 'src/xml/parsetreewalker.cpp' || echo './'`src/xml/parsetreewalker.cpp mv -f .deps/lamarc-parsetreewalker.Tpo .deps/lamarc-parsetreewalker.Po /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I./config -DLAMARC_COMPILE_LINUX -DNDEBUG -Wall -Wextra -Wno-unused -I ./config -I ./config -I ./src/bayeslike -I ./src/control -I ./src/conversion -I ./src/convErr -I ./src/convModel -I ./src/convParse -I ./src/convStrings -I ./src/convUtil -I ./src/datalike -I ./src/force -I ./src/guiconv -I ./src/guiutil -I ./src/lamarcmenus -I ./src/menu -I ./src/postlike -I ./src/report -I ./src/tools -I ./src/tree -I ./src/ui_interface -I ./src/ui_util -I ./src/ui_vars -I ./src/xml -I ./boost -I ./resources -I ./tinyxml -DTIXML_USE_STL -O2 -pipe -G0 -fno-strict-aliasing -MT lamarc-toxml.o -MD -MP -MF .deps/lamarc-toxml.Tpo -c -o lamarc-toxml.o `test -f 'src/xml/toxml.cpp' || echo './'`src/xml/toxml.cpp mv -f .deps/lamarc-toxml.Tpo .deps/lamarc-toxml.Po /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I./config -DLAMARC_COMPILE_LINUX -DNDEBUG -Wall -Wextra -Wno-unused -I ./config -I ./config -I ./src/bayeslike -I ./src/control -I ./src/conversion -I ./src/convErr -I ./src/convModel -I ./src/convParse -I ./src/convStrings -I ./src/convUtil -I ./src/datalike -I ./src/force -I ./src/guiconv -I ./src/guiutil -I ./src/lamarcmenus -I ./src/menu -I ./src/postlike -I ./src/report -I ./src/tools -I ./src/tree -I ./src/ui_interface -I ./src/ui_util -I ./src/ui_vars -I ./src/xml -I ./boost -I ./resources -I ./tinyxml -DTIXML_USE_STL -O2 -pipe -G0 -fno-strict-aliasing -MT lamarc-parsetreeschema.o -MD -MP -MF .deps/lamarc-parsetreeschema.Tpo -c -o lamarc-parsetreeschema.o `test -f 'src/xml/parsetreeschema.cpp' || echo './'`src/xml/parsetreeschema.cpp mv -f .deps/lamarc-parsetreeschema.Tpo .deps/lamarc-parsetreeschema.Po /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I./config -DLAMARC_COMPILE_LINUX -DNDEBUG -Wall -Wextra -Wno-unused -I ./config -I ./config -I ./src/bayeslike -I ./src/control -I ./src/conversion -I ./src/convErr -I ./src/convModel -I ./src/convParse -I ./src/convStrings -I ./src/convUtil -I ./src/datalike -I ./src/force -I ./src/guiconv -I ./src/guiutil -I ./src/lamarcmenus -I ./src/menu -I ./src/postlike -I ./src/report -I ./src/tools -I ./src/tree -I ./src/ui_interface -I ./src/ui_util -I ./src/ui_vars -I ./src/xml -I ./boost -I ./resources -I ./tinyxml -DTIXML_USE_STL -O2 -pipe -G0 -fno-strict-aliasing -MT lamarc-tixml_base.o -MD -MP -MF .deps/lamarc-tixml_base.Tpo -c -o lamarc-tixml_base.o `test -f 'src/xml/tixml_base.cpp' || echo './'`src/xml/tixml_base.cpp mv -f .deps/lamarc-tixml_base.Tpo .deps/lamarc-tixml_base.Po /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I./config -DLAMARC_COMPILE_LINUX -DNDEBUG -Wall -Wextra -Wno-unused -I ./config -I ./config -I ./src/bayeslike -I ./src/control -I ./src/conversion -I ./src/convErr -I ./src/convModel -I ./src/convParse -I ./src/convStrings -I ./src/convUtil -I ./src/datalike -I ./src/force -I ./src/guiconv -I ./src/guiutil -I ./src/lamarcmenus -I ./src/menu -I ./src/postlike -I ./src/report -I ./src/tools -I ./src/tree -I ./src/ui_interface -I ./src/ui_util -I ./src/ui_vars -I ./src/xml -I ./boost -I ./resources -I ./tinyxml -DTIXML_USE_STL -O2 -pipe -G0 -fno-strict-aliasing -MT lamarc-xml.o -MD -MP -MF .deps/lamarc-xml.Tpo -c -o lamarc-xml.o `test -f 'src/xml/xml.cpp' || echo './'`src/xml/xml.cpp mv -f .deps/lamarc-xml.Tpo .deps/lamarc-xml.Po /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I./config -DLAMARC_COMPILE_LINUX -DNDEBUG -Wall -Wextra -Wno-unused -I ./config -I ./config -I ./src/bayeslike -I ./src/control -I ./src/conversion -I ./src/convErr -I ./src/convModel -I ./src/convParse -I ./src/convStrings -I ./src/convUtil -I ./src/datalike -I ./src/force -I ./src/guiconv -I ./src/guiutil -I ./src/lamarcmenus -I ./src/menu -I ./src/postlike -I ./src/report -I ./src/tools -I ./src/tree -I ./src/ui_interface -I ./src/ui_util -I ./src/ui_vars -I ./src/xml -I ./boost -I ./resources -I ./tinyxml -DTIXML_USE_STL -O2 -pipe -G0 -fno-strict-aliasing -MT lamarc-xml_strings.o -MD -MP -MF .deps/lamarc-xml_strings.Tpo -c -o lamarc-xml_strings.o `test -f 'src/xml/xml_strings.cpp' || echo './'`src/xml/xml_strings.cpp mv -f .deps/lamarc-xml_strings.Tpo .deps/lamarc-xml_strings.Po /nxb-bin/usr/bin/c++ -DLAMARC_COMPILE_LINUX -DNDEBUG -Wall -Wextra -Wno-unused -I ./config -I ./config -I ./src/bayeslike -I ./src/control -I ./src/conversion -I ./src/convErr -I ./src/convModel -I ./src/convParse -I ./src/convStrings -I ./src/convUtil -I ./src/datalike -I ./src/force -I ./src/guiconv -I ./src/guiutil -I ./src/lamarcmenus -I ./src/menu -I ./src/postlike -I ./src/report -I ./src/tools -I ./src/tree -I ./src/ui_interface -I ./src/ui_util -I ./src/ui_vars -I ./src/xml -I ./boost -I ./resources -I ./tinyxml -DTIXML_USE_STL -O2 -pipe -G0 -fno-strict-aliasing -o lamarc lamarc-bayesanalyzer_1d.o lamarc-bayescurve.o lamarc-bayesparamlike_1d.o lamarc-chainmanager.o lamarc-chainout.o lamarc-chainpack.o lamarc-chainparam.o lamarc-constants.o lamarc-defaults.o lamarc-dynatracer.o lamarc-errhandling.o lamarc-lamarc.o lamarc-regiongammainfo.o lamarc-registry.o lamarc-sumfilehandler.o lamarc-userparam.o lamarc-xmlsum_strings.o l amarc-calculators.o lamarc-datapack.o lamarc-datatype.o lamarc-dlcalc.o lamarc-dlcell.o lamarc-cellmanager.o lamarc-dlmodel.o lamarc-funcMax.o lamarc-haplotypes.o lamarc-locus.o lamarc-locuscell.o lamarc-phenotypes.o lamarc-region.o lamarc-tipdata.o lamarc-epoch.o lamarc-event.o lamarc-force.o lamarc-forceparam.o lamarc-forcesummary.o lamarc-priorreport.o lamarc-timemanager.o lamarc-stair.o lamarc-paramstat.o lamarc-coalmenus.o lamarc-constraintmenus.o lamarc-datafilenamedialog.o lamarc-datamodelmenu.o lamarc-diseasemenus.o lamarc-divmenus.o lamarc-divmigmenus.o lamarc-forcesmenus.o lamarc-growthmenus.o lamarc-lamarc_strings.o lamarc-lamarcheaderdialog.o lamarc-lamarcmenu.o lamarc-lamarcmenuitems.o lamarc-logselectmenus.o lamarc-migmenus.o lamarc-nomenufilereaddialog.o lamarc-outfilemenus.o lamarc-overviewmenus.o lamarc-popsizemenu.o lamarc-priormenus.o lamarc-profilemenus.o lamarc-recmenus.o lamarc-regiongammamenus.o lamarc-traitmodelmenu.o lamarc-treesum menus.o lamarc-dialog.o lamarc-dialognoinpu! t.o lamarc-dialogrepeat.o lamarc-display.o lamarc-matrixitem.o lamarc-menu_strings.o lamarc-menuinteraction.o lamarc-menuitem.o lamarc-newmenu.o lamarc-newmenuitems.o lamarc-setmenuitem.o lamarc-togglemenuitem.o lamarc-twodtable.o lamarc-analyzer.o lamarc-derivatives.o lamarc-likelihood.o lamarc-maximizer.o lamarc-maximizer_strings.o lamarc-plforces.o lamarc-plotstat.o lamarc-profile.o lamarc-curvefiles.o lamarc-outputfile.o lamarc-reportpage.o lamarc-runreport.o lamarc-spreadsheet.o lamarc-xml_report.o lamarc-mathx.o lamarc-random.o lamarc-rangex.o lamarc-stringx.o lamarc-timex.o lamarc-vector_constants.o lamarc-vectorx.o lamarc-arranger.o lamarc-arranger_types.o lamarc-arrangervec.o lamarc-branch.o lamarc-branchbuffer.o lamarc-branchtag.o lamarc-chain.o lamarc-chainstate.o lamarc-collector.o lamarc-collmanager.o lamarc-fc_status.o lamarc-individual.o lamarc-intervaldata.o lamarc-newick.o lamarc-parameter.o lamarc-partition.o lamarc-prior.o lamarc-range.o lamarc-rectree.o lamarc-summary.o lamarc-tempident.o lamarc-timelist.o lamarc-tree.o lamarc-treesum.o lamarc-chainparam_interface.o lamarc-constraint_interface.o lamarc-data_interface.o lamarc-datamodel_interface.o lamarc-force_interface.o lamarc-front_end_warnings.o lamarc-prior_interface.o lamarc-profile_interface.o lamarc-setgetmachine.o lamarc-traitmodel_interface.o lamarc-ui_constants.o lamarc-ui_id.o lamarc-ui_interface.o lamarc-ui_regid.o lamarc-ui_strings.o lamarc-ui_warnings.o lamarc-userparam_interface.o lamarc-undoredochain.o lamarc-report_strings.o lamarc-ui_vars.o lamarc-ui_vars_chainparams.o lamarc-ui_vars_component.o lamarc-ui_vars_datamodel.o lamarc-ui_vars_datapackplus.o lamarc-ui_vars_forces.o lamarc-ui_vars_prior.o lamarc-ui_vars_traitmodels.o lamarc-ui_vars_userparams.o lamarc-lamarcschema.o lamarc-parsetreetodata.o lamarc-parsetreetosettings.o lamarc-parsetreewalker.o lamarc-toxml.o lamarc-parsetreeschema.o lamarc-tixml_base.o lamarc -xml.o lamarc-xml_strings.o libtinyxml.a ----------------------------------------------------- Lamarc 2.1.8 Please read the documentation in ./doc/html/ This Makefile will produce executables lam_conv and lamarc If you have problems, please send us an email including any compile warnings, error messages, and information on other issues you may have to lam...@gs.washington.edu [Mary Kuhner, Jon Yamato, Peter Beerli] ---------------------------------------------------- =========================================================================== =======================<phase: run-depends >============================ =========================================================================== =======================<phase: stage >============================ ===> Staging for lamarc-2.1.8_1,1 ===> Generating temporary packing list ----------------------------------------------------- Lamarc 2.1.8 Please read the documentation in ./doc/html/ This Makefile will produce executables lam_conv and lamarc If you have problems, please send us an email including any compile warnings, error messages, and information on other issues you may have to lam...@gs.washington.edu [Mary Kuhner, Jon Yamato, Peter Beerli] ---------------------------------------------------- test -z "/usr/local/bin" || /bin/mkdir -p "/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/bin" install -s -m 555 'lamarc' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/bin/lamarc' test -z "/usr/local/share/doc/lamarc" || /bin/mkdir -p "/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc" install -m 0644 'doc/html/bayes.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/bayes.html' install -m 0644 'doc/html/bayes_howto.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/bayes_howto.html' install -m 0644 'doc/html/changes.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/changes.html' install -m 0644 'doc/html/comparing_curvefiles.sxc' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/comparing_curvefiles.sxc' install -m 0644 'doc/html/comparing_curvefiles.xls' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/comparing_curvefiles.xls' install -m 0644 'doc/html/compiling.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/compiling.html' install -m 0644 'doc/html/converter.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/converter.html' install -m 0644 'doc/html/converter_cmd.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/converter_cmd.html' install -m 0644 'doc/html/curve-smoothing.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/curve-smoothing.html' install -m 0644 'doc/html/data_models.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/data_models.html' install -m 0644 'doc/html/data_required.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/data_required.html' install -m 0644 'doc/html/divergence.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/divergence.html' install -m 0644 'doc/html/forces.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/forces.html' install -m 0644 'doc/html/gamma.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/gamma.html' install -m 0644 'doc/html/genetic_map.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/genetic_map.html' install -m 0644 'doc/html/genotype.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/genotype.html' install -m 0644 'doc/html/glossary.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/glossary.html' install -m 0644 'doc/html/growthmenu.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/growthmenu.html' install -m 0644 'doc/html/forces.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/forces.html' install -m 0644 'doc/html/index.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/index.html' install -m 0644 'doc/html/insumfile.2reg3rep.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/insumfile.2reg3rep.html' install -m 0644 'doc/html/insumfile.2reg3rep.xml' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/insumfile.2reg3rep.xml' install -m 0644 'doc/html/insumfile.3rep.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/insumfile.3rep.html' install -m 0644 'doc/html/insumfile.3rep.xml' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/insumfile.3rep.xml' install -m 0644 'doc/html/limitations.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/limitations.html' install -m 0644 'doc/html/mapping.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/mapping.html' install -m 0644 'doc/html/menu.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/menu.html' install -m 0644 'doc/html/messages.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/messages.html' install -m 0644 'doc/html/migration_matrix.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/migration_matrix.html' install -m 0644 'doc/html/output.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/output.html' install -m 0644 'doc/html/outsumfile.2reg3rep.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/outsumfile.2reg3rep.html' install -m 0644 'doc/html/outsumfile.2reg3rep.xml' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/outsumfile.2reg3rep.xml' install -m 0644 'doc/html/outsumfile.3rep.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/outsumfile.3rep.html' install -m 0644 'doc/html/outsumfile.3rep.xml' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/outsumfile.3rep.xml' install -m 0644 'doc/html/overview.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/overview.html' install -m 0644 'doc/html/panels.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/panels.html' install -m 0644 'doc/html/parallel.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/parallel.html' install -m 0644 'doc/html/parameters.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/parameters.html' install -m 0644 'doc/html/regions.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/regions.html' install -m 0644 'doc/html/search.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/search.html' install -m 0644 'doc/html/tracer.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/tracer.html' install -m 0644 'doc/html/troubleshooting.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/troubleshooting.html' install -m 0644 'doc/html/tutorial.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/tutorial.html' install -m 0644 'doc/html/tutorial2.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/tutorial2.html' install -m 0644 'doc/html/upcoming.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/upcoming.html' install -m 0644 'doc/html/viral_data.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/viral_data.html' install -m 0644 'doc/html/xmlinput.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/xmlinput.html' test -z "/usr/local/share/doc/lamarc/batch_converter" || /bin/mkdir -p "/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter" install -m 0644 'doc/html/batch_converter/README.txt' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/README.txt' install -m 0644 'doc/html/batch_converter/chrom1_lamarc.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/chrom1_lamarc.html' install -m 0644 'doc/html/batch_converter/chrom1_lamarc.xml' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/chrom1_lamarc.xml' install -m 0644 'doc/html/batch_converter/chrom1.mig' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/chrom1.mig' install -m 0644 'doc/html/batch_converter/chrom2_lamarc.xml' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/chrom2_lamarc.xml' install -m 0644 'doc/html/batch_converter/chrom2.mig' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/chrom2.mig' install -m 0644 'doc/html/batch_converter/chrom3_lamarc.xml' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/chrom3_lamarc.xml' install -m 0644 'doc/html/batch_converter/chrom3_phase_cmd.xml' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/chrom3_phase_cmd.xml' install -m 0644 'doc/html/batch_converter/chrom3microsat.mig' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/chrom3microsat.mig' install -m 0644 'doc/html/batch_converter/chrom3snp.mig' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/chrom3snp.mig' install -m 0644 'doc/html/batch_converter/exported-lamarc-input.xml' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/exported-lamarc-input.xml' install -m 0644 'doc/html/batch_converter/sample-conv-cmd.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/sample-conv-cmd.html' install -m 0644 'doc/html/batch_converter/sample-conv-cmd.xml' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/sample-conv-cmd.xml' test -z "/usr/local/share/doc/lamarc/batch_converter/images" || /bin/mkdir -p "/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images" install -m 0644 'doc/html/batch_converter/images/CombinedPanels.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images/CombinedPanels.png' install -m 0644 'doc/html/batch_converter/images/DataFilesTab.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images/DataFilesTab.png' install -m 0644 'doc/html/batch_converter/images/DataPartitionsMigTab.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images/DataPartitionsMigTab.png' install -m 0644 'doc/html/batch_converter/images/DebugLogTab.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images/DebugLogTab.png' install -m 0644 'doc/html/batch_converter/images/DivergeOff.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images/DivergeOff.png' install -m 0644 'doc/html/batch_converter/images/DivMigMatrixTab.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images/DivMigMatrixTab.png' install -m 0644 'doc/html/batch_converter/images/EditMigration.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images/EditMigration.png' install -m 0644 'doc/html/batch_converter/images/EditPanelCorrection.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images/EditPanelCorrection.png' install -m 0644 'doc/html/batch_converter/images/FirstParent.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images/FirstParent.png' install -m 0644 'doc/html/batch_converter/images/FirstParent2Children.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images/FirstParent2Children.png' install -m 0644 'doc/html/batch_converter/images/FullParentsImage.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images/FullParentsImage.png' install -m 0644 'doc/html/batch_converter/images/InterumParentImage.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images/InterumParentImage.png' install -m 0644 'doc/html/batch_converter/images/MigrationOnlyMatrixTab.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images/MigrationOnlyMatrixTab.png' install -m 0644 'doc/html/batch_converter/images/PanelCorrectionOn.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images/PanelCorrectionOn.png' install -m 0644 'doc/html/batch_converter/images/SecondParent.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images/SecondParent.png' install -m 0644 'doc/html/batch_converter/images/lam_conv_chrom1_export_file_selection.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images/lam_conv_chrom1_export_file_selection.png' install -m 0644 'doc/html/batch_converter/images/lam_conv_chrom1_export_warn_1.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images/lam_conv_chrom1_export_warn_1.png' install -m 0644 'doc/html/batch_converter/images/lam_conv_chrom1_input.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images/lam_conv_chrom1_input.png' install -m 0644 'doc/html/batch_converter/images/lam_conv_chrom1_segment_panel.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images/lam_conv_chrom1_segment_panel.png' install -m 0644 'doc/html/batch_converter/images/lam_conv_chrom2_segment1.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images/lam_conv_chrom2_segment1.png' install -m 0644 'doc/html/batch_converter/images/lam_conv_chrom3_error_map_position.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images/lam_conv_chrom3_error_map_position.png' install -m 0644 'doc/html/batch_converter/images/lam_conv_chrom3_error_phase_file_needed.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images/lam_conv_chrom3_error_phase_file_needed.png' install -m 0644 'doc/html/batch_converter/images/lam_conv_chrom3_input.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images/lam_conv_chrom3_input.png' install -m 0644 'doc/html/batch_converter/images/lam_conv_chrom3_region_panel.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images/lam_conv_chrom3_region_panel.png' install -m 0644 'doc/html/batch_converter/images/lam_conv_chrom3_region_table.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images/lam_conv_chrom3_region_table.png' install -m 0644 'doc/html/batch_converter/images/lam_conv_chrom3_segment_snp.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images/lam_conv_chrom3_segment_snp.png' install -m 0644 'doc/html/batch_converter/images/lam_conv_export_file_mac_minimal.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images/lam_conv_export_file_mac_minimal.png' install -m 0644 'doc/html/batch_converter/images/lam_conv_export_file_mac_expanded.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/batch_converter/images/lam_conv_export_file_mac_expanded.png' test -z "/usr/local/share/doc/lamarc/images" || /bin/mkdir -p "/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/images" install -m 0644 'doc/html/images/LamarcAnalysisScreen.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/images/LamarcAnalysisScreen.png' install -m 0644 'doc/html/images/LamarcDataScreen.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/images/LamarcDataScreen.png' install -m 0644 'doc/html/images/LamarcIOScreen.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/images/LamarcIOScreen.png' install -m 0644 'doc/html/images/LamarcMainScreen.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/images/LamarcMainScreen.png' install -m 0644 'doc/html/images/LamarcOverviewScreen.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/images/LamarcOverviewScreen.png' install -m 0644 'doc/html/images/LamarcSearchScreen.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/images/LamarcSearchScreen.png' install -m 0644 'doc/html/images/browser-gtk.gif' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/images/browser-gtk.gif' install -m 0644 'doc/html/images/correlated1.gif' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/images/correlated1.gif' install -m 0644 'doc/html/images/correlated2.gif' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/images/correlated2.gif' install -m 0644 'doc/html/images/gui_lam_conv.gif' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/images/gui_lam_conv.gif' install -m 0644 'doc/html/images/lam_conv.gif' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/images/lam_conv.gif' install -m 0644 'doc/html/images/lamarc.gif' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/images/lamarc.gif' install -m 0644 'doc/html/images/loci-gtk.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/images/loci-gtk.png' install -m 0644 'doc/html/images/loci2-gtk.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/images/loci2-gtk.png' install -m 0644 'doc/html/images/partitions-gtk.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/images/partitions-gtk.png' install -m 0644 'doc/html/images/partitions2-gtk.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/images/partitions2-gtk.png' install -m 0644 'doc/html/images/populations-gtk.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/images/populations-gtk.png' install -m 0644 'doc/html/images/startup-gtk.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/images/startup-gtk.png' install -m 0644 'doc/html/images/tracer_trend.png' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/images/tracer_trend.png' install -m 0644 'doc/html/images/uncorrelated.gif' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/images/uncorrelated.gif' install -m 0644 'doc/html/images/variably_correlated.gif' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/images/variably_correlated.gif' test -z "/usr/local/share/doc/lamarc/trait_mapping" || /bin/mkdir -p "/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/trait_mapping" install -m 0644 'doc/html/trait_mapping/README.txt' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/trait_mapping/README.txt' install -m 0644 'doc/html/trait_mapping/lamarc-trait-input.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/trait_mapping/lamarc-trait-input.html' install -m 0644 'doc/html/trait_mapping/lamarc-trait-input.xml' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/trait_mapping/lamarc-trait-input.xml' install -m 0644 'doc/html/trait_mapping/mapfile_funny-nose.txt' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/trait_mapping/mapfile_funny-nose.txt' install -m 0644 'doc/html/trait_mapping/outfile.txt' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/trait_mapping/outfile.txt' install -m 0644 'doc/html/trait_mapping/traitCmd.html' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/trait_mapping/traitCmd.html' install -m 0644 'doc/html/trait_mapping/traitCmd.xml' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/trait_mapping/traitCmd.xml' install -m 0644 'doc/html/trait_mapping/traitCmd.xml.txt' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/trait_mapping/traitCmd.xml.txt' install -m 0644 'doc/html/trait_mapping/traitData.mig' '/wrkdirs/usr/ports/biology/lamarc/work/stage/usr/local/share/doc/lamarc/trait_mapping/traitData.mig' ====> Compressing man pages (compress-man) =========================================================================== =======================<phase: package >============================ ===> Building package for lamarc-2.1.8_1,1 pkg-static: "/var/run/ld-elf.so.hints": invalid file format *** Error code 1 Stop. make: stopped in /usr/ports/biology/lamarc _______________________________________________ freebsd-pkg-fallout@freebsd.org mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-pkg-fallout To unsubscribe, send any mail to "freebsd-pkg-fallout-unsubscr...@freebsd.org"