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Maintainer: po...@freebsd.org Last committer: amd...@freebsd.org Ident: $FreeBSD: head/biology/libsbml/Makefile 399316 2015-10-14 23:51:20Z amdmi3 $ Log URL: http://beefy8.nyi.freebsd.org/data/head-mips64-default/p402431_s291353/logs/libsbml-5.11.4_1.log Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=head-mips64-default&build=p402431_s291353 Log: ====>> Building biology/libsbml build started at Fri Dec 4 23:57:45 UTC 2015 port directory: /usr/ports/biology/libsbml building for: FreeBSD head-mips64-default-job-04 11.0-CURRENT FreeBSD 11.0-CURRENT r291353 mips maintained by: po...@freebsd.org Makefile ident: $FreeBSD: head/biology/libsbml/Makefile 399316 2015-10-14 23:51:20Z amdmi3 $ Poudriere version: 3.1.10 Host OSVERSION: 1100085 Jail OSVERSION: 1100090 !!! Jail is newer than host. (Jail: 1100090, Host: 1100085) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=mips64 UNAME_m=mips ABI_FILE=/usr/lib/crt1.o OSVERSION=1100090 UNAME_v=FreeBSD 11.0-CURRENT r291353 UNAME_r=11.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM=screen QEMU_EMULATING=1 MASTERMNT=/usr/local/poudriere/data/.m/head-mips64-default/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=libsbml-5.11.4_1 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/head-mips64-default/ref/.p/pool MASTERNAME=head-mips64-default SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.10 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for libsbml-5.11.4_1: EXAMPLES=on: Build and/or install examples PYTHON=off: Python bindings or support RUBY=off: Ruby bindings or support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/libsbml/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/libsbml/work HOME=/wrkdirs/usr/ports/biology/libsbml/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/libsbml/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/libsbml/work HOME=/wrkdirs/usr/ports/biology/libsbml/work TMPDIR="/tmp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0 -I/usr/include -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" -L/usr/lib" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -I/usr/include -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- EXAMPLES="" NO_EXAMPLES="@comment " PYTHON="@comment " NO_PYTHON="" RUBY="@comment " NO_RUBY="" CMAKE_BUILD_TYPE="release" OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" DOCSDIR="share/doc/libsbml" EXAMPLESDIR="share/examples/libsbml" DATADIR="share/libsbml" WWWDIR="www/libsbml" ETCDIR="etc/libsbml" --End PLIST_SUB-- --SUB_LIST-- EXAMPLES="" NO_EXAMPLES="@comment " PYTHON="@comment " NO_PYTHON="" RUBY="@comment " NO_RUBY="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/libsbml DOCSDIR=/usr/local/share/doc/libsbml EXAMPLESDIR=/usr/local/share/examples/libsbml WWWDIR=/usr/local/www/libsbml ETCDIR=/usr/local/etc/libsbml --End SUB_LIST-- ---Begin make.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed <snip> [head-mips64-default-job-04] Extracting pkg-1.6.2: .......... done Message from pkg-1.6.2: If you are upgrading from the old package format, first run: # pkg2ng ===> libsbml-5.11.4_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of libsbml-5.11.4_1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by libsbml-5.11.4_1 for building =========================================================================== =======================<phase: checksum >============================ ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by libsbml-5.11.4_1 for building => SHA256 Checksum OK for libSBML-5.11.4-core-src.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by libsbml-5.11.4_1 for building ===> Extracting for libsbml-5.11.4_1 => SHA256 Checksum OK for libSBML-5.11.4-core-src.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for libsbml-5.11.4_1 =========================================================================== =======================<phase: build-depends >============================ ===> libsbml-5.11.4_1 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.3.1.txz [head-mips64-default-job-04] Installing cmake-3.3.1... [head-mips64-default-job-04] `-- Installing expat-2.1.0_3... [head-mips64-default-job-04] `-- Extracting expat-2.1.0_3: .......... done [head-mips64-default-job-04] `-- Installing cmake-modules-3.3.1... [head-mips64-default-job-04] `-- Extracting cmake-modules-3.3.1: .......... done [head-mips64-default-job-04] `-- Installing curl-7.45.0... [head-mips64-default-job-04] | `-- Installing ca_root_nss-3.20.1... [head-mips64-default-job-04] | `-- Extracting ca_root_nss-3.20.1: ....... done [head-mips64-default-job-04] `-- Extracting curl-7.45.0: .......... done [head-mips64-default-job-04] `-- Installing libarchive-3.1.2_4,1... [head-mips64-default-job-04] | `-- Installing lzo2-2.09... [head-mips64-default-job-04] | `-- Extracting lzo2-2.09: .......... done [head-mips64-default-job-04] `-- Extracting libarchive-3.1.2_4,1: .......... done [head-mips64-default-job-04] `-- Installing jsoncpp-0.6.0.r2_2... [head-mips64-default-job-04] `-- Extracting jsoncpp-0.6.0.r2_2: .......... done [head-mips64-default-job-04] Extracting cmake-3.3.1: .......... done Message from ca_root_nss-3.20.1: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> libsbml-5.11.4_1 depends on file: /usr/local/bin/cmake - found ===> Returning to build of libsbml-5.11.4_1 =========================================================================== =======================<phase: lib-depends >============================ ===> libsbml-5.11.4_1 depends on shared library: libxml2.so - not found ===> Installing existing package /packages/All/libxml2-2.9.3.txz [head-mips64-default-job-04] Installing libxml2-2.9.3... [head-mips64-default-job-04] Extracting libxml2-2.9.3: .......... done ===> libsbml-5.11.4_1 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) ===> Returning to build of libsbml-5.11.4_1 =========================================================================== =======================<phase: configure >============================ ===> Configuring for libsbml-5.11.4_1 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.11.4/config/libtool.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.11.4/configure ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/biology/libsbml/work/.build -- The C compiler identification is GNU 4.2.1 -- The CXX compiler identification is GNU 4.2.1 -- Check for working C compiler: /nxb-bin/usr/bin/cc -- Check for working C compiler: /nxb-bin/usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /nxb-bin/usr/bin/c++ -- Check for working CXX compiler: /nxb-bin/usr/bin/c++ -- works -- Detecting CXX compiler ABI info CMake Error: Generator: execution of make failed. Make command was: "/usr/bin/make" "cmTC_3ba0e/fast" -- Detecting CXX compiler ABI info - failed -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /nxb-bin/usr/bin/cc -- works -- Detecting C compile features -- Detecting C compile features - done -- Could NOT find SWIG (missing: SWIG_EXECUTABLE SWIG_DIR) -- Looking for BZ2_bzCompressInit in /usr/lib/libbz2.so -- Looking for BZ2_bzCompressInit in /usr/lib/libbz2.so - found -- Looking for gzopen in /usr/lib/libz.so -- Looking for gzopen in /usr/lib/libz.so - found -- Looking for include file check.h -- Looking for include file check.h - not found -- Looking for include file expat.h -- Looking for include file expat.h - not found -- Looking for include file errno.h -- Looking for include file errno.h - found -- Looking for include file ieeefp.h -- Looking for include file ieeefp.h - found -- Looking for include file math.h -- Looking for include file math.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file float.h -- Looking for include file float.h - found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - big endian -- Looking for sqrt in m -- Looking for sqrt in m - found -- ---------------------------------------------------------------------- libSBML version 5.11.4 ---------------------------------------------------------------------- More information and the latest version are available online at http://sbml.org/Software/libSBML Please report problems using the issue tracker at http://sbml.org/Software/libsbml/issue-tracker To contact the developers directly, email libsbml-t...@caltech.edu Configured on host 'head-mips64-default-job-04' host type = FreeBSD host operating system = FreeBSD 11.0-CURRENT host CPU architecture = mips64 General build flags: CC = /nxb-bin/usr/bin/cc CXX = /nxb-bin/usr/bin/c++ CPPFLAGS = -DLINUX CFLAGS = -O2 -pipe -G0 -I/usr/include -fno-strict-aliasing -fno-strict-aliasing -fPIC CXXFLAGS = -O2 -pipe -G0 -I/usr/include -fno-strict-aliasing -fno-strict-aliasing -fPIC LDFLAGS = -L/usr/lib XML parser library configuration: XML library = libxml2 CPPFLAGS for XML = -I/usr/local/include/libxml2 LIBS for XML = /usr/local/lib/libxml2.so Other libSBML configuration settings: Installation $prefix = /usr/local -- Value of $LD_LIBRARY_PATH = -- Using SWIG = SWIG_EXECUTABLE-NOTFOUND (Version ) -- Using C++ namespace ('libsbml') = no -- -- Build examples = no -- -- Use Legacy Math = no -- -- Support for SBML Level 3 Packages: -- SBML 'layout' package = OFF -- -- Other potentially important settings: -- Compression support is enabled for .zip and .gz files -- Compression support is enabled for .bz2 files -- ---------------------------------------------------------------------- -- Configuring incomplete, errors occurred! See also "/wrkdirs/usr/ports/biology/libsbml/work/.build/CMakeFiles/CMakeOutput.log". See also "/wrkdirs/usr/ports/biology/libsbml/work/.build/CMakeFiles/CMakeError.log". *** Error code 1 Stop. make: stopped in /usr/ports/biology/libsbml _______________________________________________ freebsd-pkg-fallout@freebsd.org mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-pkg-fallout To unsubscribe, send any mail to "freebsd-pkg-fallout-unsubscr...@freebsd.org"
