subject:"\[package \- main\-armv7\-default\]\[biology\/htslib\] Failed for htslib\-1.16 in build"

[package - main-armv7-default][biology/htslib] Failed for htslib-1.16 in build

2023-02-27 Thread pkg-fallout



You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: j...@freebsd.org
Log URL:
https://pkg-status.freebsd.org/ampere2/data/main-armv7-default/p1b4f77b589d3_s8147104965/logs/htslib-1.16.log
Build URL:  
https://pkg-status.freebsd.org/ampere2/build.html?mastername=main-armv7-default&build=p1b4f77b589d3_s8147104965
Log:

=>> Building biology/htslib
build started at Mon Feb 27 22:59:08 UTC 2023
port directory: /usr/ports/biology/htslib
package name: htslib-1.16
building for: FreeBSD main-armv7-default-job-12 14.0-CURRENT FreeBSD 
14.0-CURRENT 1400078 arm
maintained by: j...@freebsd.org
Makefile ident: 
Poudriere version: 3.2.8-23-ga7f8d188
Host OSVERSION: 1400073
Jail OSVERSION: 1400078
Job Id: 12




!!! Jail is newer than host. (Jail: 1400078, Host: 1400073) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/sh
OSVERSION=1400078
UNAME_v=FreeBSD 14.0-CURRENT 1400078
UNAME_r=14.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-23-ga7f8d188
MASTERMNT=/usr/local/poudriere/data/.m/main-armv7-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=main-armv7-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
===> The following configuration options are available for htslib-1.16:
 CURL=on: Use libcurl for network file access (HTTPS and S3 support).
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
j...@freebsd.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--enable-libcurl --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl 
ac_cv_path_PERL_PATH=/usr/local/bin/perl  PERL_USE_UNSAFE_INC=1 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/htslib/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/htslib/work  
XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/htslib/work/.cache  
HOME=/wrkdirs/usr/ports/biology/htslib/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/htslib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 
PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/htslib/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig
 SHELL=/bin/sh CONFIG_SHELL=/bin/sh DEFAULT_AUTOCONF=2.71 
CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site 
lt_cv_sys_max_cmd_len=524288
--End CONFIGURE_ENV--

--MAKE_ENV--
PERL_USE_UNSAFE_INC=1 OPENSSLBASE=/usr OPENSSLDIR=/etc/ssl 
OPENSSLINC=/usr/include OPENSSLLIB=/usr/lib 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/htslib/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/htslib/work  
XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/htslib/work/.cache  
HOME=/wrkdirs/usr/ports/biology/htslib/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/htslib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 
PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/htslib/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig
 MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
DEFAULT_AUTOCONF=2.71 PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" 
CFLAGS="-O2 -pipe  -fstack-protector-strong -isystem /usr/local/include 
-fno-strict-aliasing "  CPP="cpp" CPPFLAGS="-isystem /usr/local/include"  
LDFLAGS="  -fstack-protector-strong " LIBS="-L/usr/local/lib"  CXX="c++" 
CXXFLAGS="-O2 -pipe -fstack-protector-stron
 g -isystem /usr/local/include -fno-strict-aliasing  -isystem 
/usr/local/include "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s 
-m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 
555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PORTVERSION="1.16" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local  
RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.32.1  PERL_VER=5.32  
PERL5_MAN1=lib/perl5/site_perl/man/man1  
PERL5_MAN3=lib/perl5/site_perl/man/man3  SITE_PERL=lib/perl5/site_perl  
SITE_ARCH=lib/perl5/site_perl/mach/5.32 DOCSDIR="share/doc/htslib"  
EXAMPLESDIR="share/examples/htslib"  DATADIR="share/htslib"  
WWWDIR="www/htslib"

[package - main-armv7-default][biology/htslib] Failed for htslib-1.16 in build

2023-02-18 Thread pkg-fallout



You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: j...@freebsd.org
Log URL:
https://pkg-status.freebsd.org/ampere2/data/main-armv7-default/p909032bc6729_s8147104965/logs/htslib-1.16.log
Build URL:  
https://pkg-status.freebsd.org/ampere2/build.html?mastername=main-armv7-default&build=p909032bc6729_s8147104965
Log:

=>> Building biology/htslib
build started at Sat Feb 18 13:29:40 UTC 2023
port directory: /usr/ports/biology/htslib
package name: htslib-1.16
building for: FreeBSD main-armv7-default-job-11 14.0-CURRENT FreeBSD 
14.0-CURRENT 1400078 arm
maintained by: j...@freebsd.org
Makefile ident: 
Poudriere version: 3.2.8-23-ga7f8d188
Host OSVERSION: 1400073
Jail OSVERSION: 1400078
Job Id: 11




!!! Jail is newer than host. (Jail: 1400078, Host: 1400073) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/sh
OSVERSION=1400078
UNAME_v=FreeBSD 14.0-CURRENT 1400078
UNAME_r=14.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-23-ga7f8d188
MASTERMNT=/usr/local/poudriere/data/.m/main-armv7-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=main-armv7-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
===> The following configuration options are available for htslib-1.16:
 CURL=on: Use libcurl for network file access (HTTPS and S3 support).
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
j...@freebsd.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--enable-libcurl --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl 
ac_cv_path_PERL_PATH=/usr/local/bin/perl  PERL_USE_UNSAFE_INC=1 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/htslib/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/htslib/work  
XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/htslib/work/.cache  
HOME=/wrkdirs/usr/ports/biology/htslib/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/htslib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 
PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/htslib/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig
 SHELL=/bin/sh CONFIG_SHELL=/bin/sh DEFAULT_AUTOCONF=2.71 
CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site 
lt_cv_sys_max_cmd_len=524288
--End CONFIGURE_ENV--

--MAKE_ENV--
PERL_USE_UNSAFE_INC=1 OPENSSLBASE=/usr OPENSSLDIR=/etc/ssl 
OPENSSLINC=/usr/include OPENSSLLIB=/usr/lib 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/htslib/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/htslib/work  
XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/htslib/work/.cache  
HOME=/wrkdirs/usr/ports/biology/htslib/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/htslib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 
PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/htslib/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig
 MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
DEFAULT_AUTOCONF=2.71 PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" 
CFLAGS="-O2 -pipe  -fstack-protector-strong -isystem /usr/local/include 
-fno-strict-aliasing "  CPP="cpp" CPPFLAGS="-isystem /usr/local/include"  
LDFLAGS="  -fstack-protector-strong " LIBS="-L/usr/local/lib"  CXX="c++" 
CXXFLAGS="-O2 -pipe -fstack-protector-stron
 g -isystem /usr/local/include -fno-strict-aliasing  -isystem 
/usr/local/include "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s 
-m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 
555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PORTVERSION="1.16" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local  
RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.32.1  PERL_VER=5.32  
PERL5_MAN1=lib/perl5/site_perl/man/man1  
PERL5_MAN3=lib/perl5/site_perl/man/man3  SITE_PERL=lib/perl5/site_perl  
SITE_ARCH=lib/perl5/site_perl/mach/5.32 DOCSDIR="share/doc/htslib"  
EXAMPLESDIR="share/examples/htslib"  DATADIR="share/htslib"  
WWWDIR="www/htslib"

[package - main-armv7-default][biology/htslib] Failed for htslib-1.16 in build

2023-02-08 Thread pkg-fallout



You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: j...@freebsd.org
Log URL:
https://pkg-status.freebsd.org/ampere2/data/main-armv7-default/p2f5a35cecf5c_s8147104965/logs/htslib-1.16.log
Build URL:  
https://pkg-status.freebsd.org/ampere2/build.html?mastername=main-armv7-default&build=p2f5a35cecf5c_s8147104965
Log:

=>> Building biology/htslib
build started at Wed Feb  8 17:46:52 UTC 2023
port directory: /usr/ports/biology/htslib
package name: htslib-1.16
building for: FreeBSD main-armv7-default-job-08 14.0-CURRENT FreeBSD 
14.0-CURRENT 1400078 arm
maintained by: j...@freebsd.org
Makefile ident: 
Poudriere version: 3.2.8-23-ga7f8d188
Host OSVERSION: 1400073
Jail OSVERSION: 1400078
Job Id: 08




!!! Jail is newer than host. (Jail: 1400078, Host: 1400073) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/sh
OSVERSION=1400078
UNAME_v=FreeBSD 14.0-CURRENT 1400078
UNAME_r=14.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-23-ga7f8d188
MASTERMNT=/usr/local/poudriere/data/.m/main-armv7-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=main-armv7-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
===> The following configuration options are available for htslib-1.16:
 CURL=on: Use libcurl for network file access (HTTPS and S3 support).
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
j...@freebsd.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--enable-libcurl --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl 
ac_cv_path_PERL_PATH=/usr/local/bin/perl  PERL_USE_UNSAFE_INC=1 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/htslib/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/htslib/work  
XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/htslib/work/.cache  
HOME=/wrkdirs/usr/ports/biology/htslib/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/htslib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 
PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/htslib/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig
 SHELL=/bin/sh CONFIG_SHELL=/bin/sh DEFAULT_AUTOCONF=2.71 
CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site 
lt_cv_sys_max_cmd_len=524288
--End CONFIGURE_ENV--

--MAKE_ENV--
PERL_USE_UNSAFE_INC=1 OPENSSLBASE=/usr OPENSSLDIR=/etc/ssl 
OPENSSLINC=/usr/include OPENSSLLIB=/usr/lib 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/htslib/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/htslib/work  
XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/htslib/work/.cache  
HOME=/wrkdirs/usr/ports/biology/htslib/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/htslib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 
PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/htslib/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig
 MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
DEFAULT_AUTOCONF=2.71 PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" 
CFLAGS="-O2 -pipe  -fstack-protector-strong -isystem /usr/local/include 
-fno-strict-aliasing "  CPP="cpp" CPPFLAGS="-isystem /usr/local/include"  
LDFLAGS="  -fstack-protector-strong " LIBS="-L/usr/local/lib"  CXX="c++" 
CXXFLAGS="-O2 -pipe -fstack-protector-stron
 g -isystem /usr/local/include -fno-strict-aliasing  -isystem 
/usr/local/include "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s 
-m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 
555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PORTVERSION="1.16" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local  
RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.32.1  PERL_VER=5.32  
PERL5_MAN1=lib/perl5/site_perl/man/man1  
PERL5_MAN3=lib/perl5/site_perl/man/man3  SITE_PERL=lib/perl5/site_perl  
SITE_ARCH=lib/perl5/site_perl/mach/5.32 DOCSDIR="share/doc/htslib"  
EXAMPLESDIR="share/examples/htslib"  DATADIR="share/htslib"  
WWWDIR="www/htslib"

[package - main-armv7-default][biology/htslib] Failed for htslib-1.16 in build

2023-01-30 Thread pkg-fallout



You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: j...@freebsd.org
Log URL:
https://pkg-status.freebsd.org/ampere2/data/main-armv7-default/pd1d6df7c230b_s0bd4c448ec/logs/htslib-1.16.log
Build URL:  
https://pkg-status.freebsd.org/ampere2/build.html?mastername=main-armv7-default&build=pd1d6df7c230b_s0bd4c448ec
Log:

=>> Building biology/htslib
build started at Mon Jan 30 20:36:17 UTC 2023
port directory: /usr/ports/biology/htslib
package name: htslib-1.16
building for: FreeBSD main-armv7-default-job-01 14.0-CURRENT FreeBSD 
14.0-CURRENT 1400078 arm
maintained by: j...@freebsd.org
Makefile ident: 
Poudriere version: 3.2.8-23-ga7f8d188
Host OSVERSION: 1400073
Jail OSVERSION: 1400078
Job Id: 01




!!! Jail is newer than host. (Jail: 1400078, Host: 1400073) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/sh
OSVERSION=1400078
UNAME_v=FreeBSD 14.0-CURRENT 1400078
UNAME_r=14.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-23-ga7f8d188
MASTERMNT=/usr/local/poudriere/data/.m/main-armv7-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=main-armv7-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
===> The following configuration options are available for htslib-1.16:
 CURL=on: Use libcurl for network file access (HTTPS and S3 support).
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
j...@freebsd.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--enable-libcurl --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl 
ac_cv_path_PERL_PATH=/usr/local/bin/perl  PERL_USE_UNSAFE_INC=1 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/htslib/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/htslib/work  
XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/htslib/work/.cache  
HOME=/wrkdirs/usr/ports/biology/htslib/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/htslib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 
PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/htslib/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig
 SHELL=/bin/sh CONFIG_SHELL=/bin/sh DEFAULT_AUTOCONF=2.71 
CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site 
lt_cv_sys_max_cmd_len=524288
--End CONFIGURE_ENV--

--MAKE_ENV--
PERL_USE_UNSAFE_INC=1 OPENSSLBASE=/usr OPENSSLDIR=/etc/ssl 
OPENSSLINC=/usr/include OPENSSLLIB=/usr/lib 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/htslib/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/htslib/work  
XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/htslib/work/.cache  
HOME=/wrkdirs/usr/ports/biology/htslib/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/htslib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 
PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/htslib/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig
 MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
DEFAULT_AUTOCONF=2.71 PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" 
CFLAGS="-O2 -pipe  -fstack-protector-strong -isystem /usr/local/include 
-fno-strict-aliasing "  CPP="cpp" CPPFLAGS="-isystem /usr/local/include"  
LDFLAGS="  -fstack-protector-strong " LIBS="-L/usr/local/lib"  CXX="c++" 
CXXFLAGS="-O2 -pipe -fstack-protector-stron
 g -isystem /usr/local/include -fno-strict-aliasing  -isystem 
/usr/local/include "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s 
-m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 
555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PORTVERSION="1.16" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local  
RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.32.1  PERL_VER=5.32  
PERL5_MAN1=lib/perl5/site_perl/man/man1  
PERL5_MAN3=lib/perl5/site_perl/man/man3  SITE_PERL=lib/perl5/site_perl  
SITE_ARCH=lib/perl5/site_perl/mach/5.32 DOCSDIR="share/doc/htslib"  
EXAMPLESDIR="share/examples/htslib"  DATADIR="share/htslib"  
WWWDIR="www/htslib"

[package - main-armv7-default][biology/htslib] Failed for htslib-1.16 in build

2023-01-20 Thread pkg-fallout



You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer: j...@freebsd.org
Log URL:
https://pkg-status.freebsd.org/ampere2/data/main-armv7-default/p65c6f35619ce_s4883f347f6/logs/htslib-1.16.log
Build URL:  
https://pkg-status.freebsd.org/ampere2/build.html?mastername=main-armv7-default&build=p65c6f35619ce_s4883f347f6
Log:

=>> Building biology/htslib
build started at Fri Jan 20 21:12:06 UTC 2023
port directory: /usr/ports/biology/htslib
package name: htslib-1.16
building for: FreeBSD main-armv7-default-job-07 14.0-CURRENT FreeBSD 
14.0-CURRENT 1400078 arm
maintained by: j...@freebsd.org
Makefile ident: 
Poudriere version: 3.2.8-23-ga7f8d188
Host OSVERSION: 1400073
Jail OSVERSION: 1400078
Job Id: 07




!!! Jail is newer than host. (Jail: 1400078, Host: 1400073) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/sh
OSVERSION=1400078
UNAME_v=FreeBSD 14.0-CURRENT 1400078
UNAME_r=14.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-23-ga7f8d188
MASTERMNT=/usr/local/poudriere/data/.m/main-armv7-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=main-armv7-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
===> The following configuration options are available for htslib-1.16:
 CURL=on: Use libcurl for network file access (HTTPS and S3 support).
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
j...@freebsd.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--enable-libcurl --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl 
ac_cv_path_PERL_PATH=/usr/local/bin/perl  PERL_USE_UNSAFE_INC=1 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/htslib/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/htslib/work  
XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/htslib/work/.cache  
HOME=/wrkdirs/usr/ports/biology/htslib/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/htslib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 
PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/htslib/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig
 SHELL=/bin/sh CONFIG_SHELL=/bin/sh DEFAULT_AUTOCONF=2.71 
CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site 
lt_cv_sys_max_cmd_len=524288
--End CONFIGURE_ENV--

--MAKE_ENV--
PERL_USE_UNSAFE_INC=1 OPENSSLBASE=/usr OPENSSLDIR=/etc/ssl 
OPENSSLINC=/usr/include OPENSSLLIB=/usr/lib 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/htslib/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/htslib/work  
XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/htslib/work/.cache  
HOME=/wrkdirs/usr/ports/biology/htslib/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/htslib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 
PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/htslib/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig
 MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
DEFAULT_AUTOCONF=2.71 PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" 
CFLAGS="-O2 -pipe  -fstack-protector-strong -isystem /usr/local/include 
-fno-strict-aliasing "  CPP="cpp" CPPFLAGS="-isystem /usr/local/include"  
LDFLAGS="  -fstack-protector-strong " LIBS="-L/usr/local/lib"  CXX="c++" 
CXXFLAGS="-O2 -pipe -fstack-protector-stron
 g -isystem /usr/local/include -fno-strict-aliasing  -isystem 
/usr/local/include "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s 
-m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 
555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PORTVERSION="1.16" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local  
RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.32.1  PERL_VER=5.32  
PERL5_MAN1=lib/perl5/site_perl/man/man1  
PERL5_MAN3=lib/perl5/site_perl/man/man3  SITE_PERL=lib/perl5/site_perl  
SITE_ARCH=lib/perl5/site_perl/mach/5.32 DOCSDIR="share/doc/htslib"  
EXAMPLESDIR="share/examples/htslib"  DATADIR="share/htslib"  
WWWDIR="www/htslib"

[package - main-armv7-default][biology/htslib] Failed for htslib-1.16 in build

[package - main-armv7-default][biology/htslib] Failed for htslib-1.16 in build

[package - main-armv7-default][biology/htslib] Failed for htslib-1.16 in build

[package - main-armv7-default][biology/htslib] Failed for htslib-1.16 in build

[package - main-armv7-default][biology/htslib] Failed for htslib-1.16 in build

5 matches

Site Navigation

Mail list logo

Footer information