[Freesurfer] Problem with setting segmentation threshold values

2006-02-01 Thread Goradia, Dhruman D
Hi, I am interested in changing the white matter low limit for the segmentation step. For this I typed the following in the command prompt: recon-all subjid subjectname -autorecon2 seg-wlo low limit value this gave me an error stating that it could not recognize seg-wlo flag. I was

Re: [Freesurfer] Problem with setting segmentation threshold values

2006-02-01 Thread Nick Schmansky
Dhruman, The -seg-wlo flag should work. Possibly you have an old version of recon-all. Which version of recon-all are you using? To find out, type: recon-all --version Nick On Wed, 2006-02-01 at 11:45 -0500, Bruce Fischl wrote: Hi Dhruman, there is no default threshold - it's