[Freesurfer] [martinos-tech] New average subject and stable release, v3.0 (fwd)

2006-03-10 Thread Jenni Pacheco
I am re-sending an email that Doug wrote earlier this week, as it was a thorough description of some pretty important changes to the average subject and talairach subject. There is a new average subject to replace average7 that ALSO replaces the talairach subject. It is called fsaverage and

Re: [Freesurfer] Re: [martinos-tech] New average subject and stable release, v3.0

2006-03-10 Thread Frida Polli
but there are label areas not clusters On Friday, March 10, 2006, at 08:39 AM, Doug Greve wrote: When you use average7, it turns off fixing of vertex area, which makes the clusters bigger. The end result, as you've noticed, is that the cluster area is about right :). doug Frida Polli

[Freesurfer] stable3 vs. stable-pub

2006-03-10 Thread Vasanth Pappu
Hi, in /usr/local/freesurfer/, there is stable3 and stable3-pub. What is the difference between these two; our group is interested in freezing a copy but not sure which one to pick. Thanks, Vasanth Pappu -- ___ Freesurfer mailing list

Re: [Freesurfer] stable3 vs. stable-pub

2006-03-10 Thread Nick Schmansky
stable3-pub is the same as stable3, minus a few items not meant for public distribution. for nmr center users, freeze stable3. Hi, in /usr/local/freesurfer/, there is stable3 and stable3-pub. What is the difference between these two; our group is interested in freezing a copy but not sure

Re: [Freesurfer] talairach subject

2006-03-10 Thread Nick Schmansky
Sasha, See also the new files in your $FREESURFER_HOME/average directory: mni305.cor.mgz mni305.cor.readme The mgz file can be used as the Talairach target with tkregister2. Nick On Fri, 2006-03-10 at 10:08 -0500, Sasha Wolosin wrote: Dear all, I noticed that there is no talairach

Re: [Freesurfer] Re: [martinos-tech] New average subject and stable release, v3.0

2006-03-10 Thread Doug Greve
Which tool are you using to measure the label area? Frida Polli wrote: but there are label areas not clusters On Friday, March 10, 2006, at 08:39 AM, Doug Greve wrote: When you use average7, it turns off fixing of vertex area, which makes the clusters bigger. The end result, as you've

[Freesurfer] mgh to something else

2006-03-10 Thread Pellegrini, Stefano (NIH/NINDS) [F]
Hi everybody, I know that the mgh/mgz format is quite new and there is not much documentation around, yet. I was wondering if there is some procedure already implemented to convert this format to something else, let's say minc format. thanks a lot, -stefano

Re: [Freesurfer] mgh to something else

2006-03-10 Thread Bruce Fischl
mri_convert file.mgh file.mnc On Fri, 10 Mar 2006, Pellegrini, Stefano (NIH/NINDS) [F] wrote: Hi everybody, I know that the mgh/mgz format is quite new and there is not much documentation around, yet. I was wondering if there is some procedure already implemented to convert this format