[Freesurfer] feature wish for tkregister/tkmedit

Hi All, Hi Doug, now since 3.0.4 is out of the door, you might be wondering what to do next ;). In case you are short of ideas, here is my short wish list for new features. It is all about mosaic/slice display in the two programs. Tkmedit does allow a mosaic view of volumes, which is nice.

Re: [Freesurfer] Version problems

there a small differences in the algorithms between the two versions, so you'll need to rerun them all with either version (preferably the newer I would think) On Wed, 22 Nov 2006, Martin Ystad wrote: Hi, I have currently processed some 100 brains in freesurfer on different machines.

[Freesurfer] Version problems

Hi, I have currently processed some 100 brains in freesurfer on different machines. Unfortunately, one machine was installed with version 3.0.3 (64 bit version), while the other machines were using version 3.0.1 (32 bit). It now looks like there is a systematic difference in the results from

Re: [Freesurfer] Partial brain statistics registered to a full brain surface-based map?

Mapping to the subject's own surface looks promising, but I'm ultimately not seeing what I think should be correct. Let me give you some examples of how I've reached this observation. Note that anat2exf.register.dat is the same for all the command lines listed below. Statistical image

[Freesurfer] mri_convert 4D

Hi - I've been using the mri_convert referenced in the email below to convert DICOM to ANALYZE format. Has this feature been included in the new Freesurfer release? Re: [Freesurfer] mri_convert: dicom to nifti 4D Doug Greve Fri, 07 Jul 2006 11:10:27 -0700 Hi Adam, I've created a new

Re: [Freesurfer] mri_convert 4D

I think it is in the development version but it is not in stable. doug On Wed, 22 Nov 2006, Shi, Bo wrote: Hi - I've been using the mri_convert referenced in the email below to convert DICOM to ANALYZE format. Has this feature been included in the new Freesurfer release? Re:

[Freesurfer] Extracting surface normals using mri_surf2surf

Hi, All, I am trying to extract the surface normal values using mri_surf2surf: %mri_surf2surf --s subject1 --hemi lh --sval-nxyz white --tval lh.white.surfn.img --trg_type analyze4d The error mesage is : .. Loading source data Extracting surface normals INFO: surfcluster: NOT fixing group

RE: [Freesurfer] command for aseg stats to export to spreadsheet(excel)

You can use asegstats2table. Jenni Pacheco, M.A. Massachusetts General Hospital Athinoula A. Martinos Center for Biomedical Imaging Bldg. 149, 13th Street, CNY 2301 Charlestown, MA 02129 [EMAIL PROTECTED] -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of

[Freesurfer] command for aseg stats to export to spreadsheet(excel)

Hello Users, I wanted to know if there is a command to directly export the aseg-stats table to a spreadsheet rather than cuttting and pasting. And wishing all of you a very happy Thanksgiving and a great weekend!! Regards Chacko.

Re: [Freesurfer] command for aseg stats to export to spreadsheet(excel)

Thank you Jenni. How do i use asegstats2table?What is the command?Is it a tcl script file?If so,could you also mention where it is located. Regards Chacko. - Original Message From: Jenni Pacheco [EMAIL PROTECTED] To: Chacko Cherian [EMAIL PROTECTED]; Freesurfer

RE: [Freesurfer] command for aseg stats to export to spreadsheet(excel)

There should be some help associated with it, try simplying typibg asegstats2table or maybe asegstats2table --help Jenni Pacheco, M.A. Massachusetts General Hospital Athinoula A. Martinos Center for Biomedical Imaging Bldg. 149, 13th Street, CNY 2301 Charlestown, MA 02129 [EMAIL PROTECTED]

Re: [Freesurfer] Partial brain statistics registered to a full brain surface-based map?

Hmm, there's something fishy here. If the tkmedit command worked, then the 2nd tksurfer cmd (onto SUBJ1) should have worked. The first tksurfer command should NOT have worked as the registration would not be correct for for the average subject. Are you sure you did not reverse these? Which