[Freesurfer] Statistic analysing for a mask

Dear Freesurfer users, We have an MNI mask and we want to apply this mask on a group of subjects for small volume correction. so we did the following steps: 1. cd $SUBJECTS_DIR/fsaverage/surf fslregister --s fsaverage --mov /path/to/TT_avg152T1.nii --reg TT_avg152T1_to_fsaverage.dat 2. cd

Re: [Freesurfer] Statistic analysing for a mask

Alexandru, You will want to add the flag --reshape to the mri_surf2surf command. That will fix the dimension mismatch problem. Nick On Sat, 2008-12-06 at 14:43 +, Alexandru Hanganu wrote: Dear Freesurfer users, We have an MNI mask and we want to apply this mask on a group of subjects