Kenta,
The error message says:
3dvolreg: error while loading shared libraries: libXp.so.6
so either libXp.so.6 needs to installed on your system, or symlinked to
an existing libXp, or AFNI needs to be installed.
The freesurfer distribution includes 3dvolreg, the only AFNI binary
copied from
Can you send us the recon-all.log?
On Sep 3, 2009, at 4:29 AM, Zheng Hui zheng@duke-nus.edu.sg
wrote:
Dear Bruce,
In the attached image at the ventricle area, you can see the pial
and white surfaces go into the ventricle, following the white/CSF
boundary rather than going through
Hi, there,
I am wondering how i can do a comparison of two scans of the same object,
calculating the percent volume difference and percent volume overlap of
hippocampus,...etc.
Somebody can give me a hint?
Thanks a lot!
Guang Zeng
Hi Guang,
if it is the same subject, use the longitudinal stream:
http://surfer.nmr.mgh.harvard.edu/fswiki/LongitudinalProcessing
Cheers, Martin
On Thu, 2009-09-03 at 11:46 -0500, Guang Zeng wrote:
Hi, there,
I am wondering how i can do a comparison of two scans of the same object,
Hi:
In the aseg.stats file, some columns has the title: normMean,
normRange, etc... What is the meaning of the word norm ?...
Sincerely,
--
Gonzalo Rojas Costa
Department of Radiology
Clínica Las Condes
Lo Fontecilla 441, Las Condes, Santiago, Chile.
Tel: 56-2-2105170
Cel:
that means it's from the norm.mgz volume
Gonzalo Rojas wrote:
Hi:
In the aseg.stats file, some columns has the title: normMean,
normRange, etc... What is the meaning of the word norm ?...
Sincerely,
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone
Hi Ed, sorry for the delay. For GM, you'll need to do the following:
1. Create a binary mask of the cortical GM:
mri_binarize --i aparc+aseg.mgz --min 999.5 --o ctx.mgz
This is just a thresholding operation. All the cortical areas have
an index = 1000.
2. Create a binary mask of the
Dear all.
I'd like to make a thickness difference figure with FDR corrected color scale
bar.
For example.
FDR corrected p0.05 p0.01 p0.001
Color scale bar==
However, in the qdec or tksurfer, only the
It's not a voxel-wise FDR correction. FDR is used to choose the
voxel-wise threshold. The values themselves are still uncorrected.
doug
류철형 wrote:
Dear all.
I'd like to make a thickness difference figure with FDR corrected
color scale bar.
For example.
FDR corrected p0.05 p0.01 p0.001
