Thank you so much for your quick response :)
presumably this problem does not occur in tkmedit or freeview?
it works fine in tkmedit, but in freeview the same (or similar?) problem
occurred:
(volume: orig.mgz (http://dl.dropbox.com/u/1263357/orig.mgz) ; surface:
rh.pial
Dear freesurfer experts,
I need your help on recon. I tried to perform recon-all on my
anonymized control subjects (chunk of face/eyes removed on T1.mgz) and
run autorecon1.
It ran smoothly till the end of workflow of autorecon1 and came up
with the following:
mri_watershed Error:
Hi Toh,
did you check the talairach transform? If it's ok, try either running the
watershed skull stripping with a different preflooding height or without
the atlas.
cheers
Bruce
On Sat, 17 Jul 2010, Toh Hock Wong wrote:
Dear freesurfer experts,
I need your help on recon. I tried to
you don't have to correct it. Slicer needs to be able to read it from the
volumes and surfaces to properly display them.
On Sat, 17 Jul 2010, Steffen
Bollmann wrote:
Thank you so much for your quick response :)
presumably this problem does not occur in tkmedit or freeview?
it works fine in
Hi,
Does anyone know one of studies which uses the parcellations (aparc or
aparc.a2009s) Freesurfer provides to extract fMRI time course from each
subject's fMRI data. Reading the instructions in Freesurfer Wiki, I know how
to do that. However, I am not sure whether I should use the parcellations
Hi:
I want to reprocess some OASIS-Brains data with the newest version of
freesurfer... Which are the freesurfer command line that I must use (with
legacy option) ?... And, I must do the complete processing or only some of
the stages (autorecon1, autorecon2 autorecon3) ?...
Sincerely,
Hi:
I used the command:
recon-all -subject OAS1_0153_MR1 -all -legacy
but I got the error: ERROR: you have specified -legacy, but this does not
look like a legacy analysis.
Sincerely,
Gonzalo Rojas Costa
___
Freesurfer mailing list
Hi,
When I use make_average_subject to generate an average data, I can't find
aparc.a2009s+aseg.mgz within the new average/mri. To get common parcellation
to all subjects, I need to create this file. I understand that
mri_aparc2aseg --s average --a2009s
enable to perform what I want. However,
Hi Gonzalo,
if you want to reprocesss then I guess you want to do -all. Otherwise why
are you reprocessing?
Bruce
On Sat, 17 Jul 2010, Gonzalo Rojas Costa wrote:
Hi:
I want to reprocess some OASIS-Brains data with the newest version of
freesurfer... Which are the freesurfer command line
try it without the -legacy
On Sat, 17 Jul 2010, Gonzalo Rojas Costa wrote:
Hi:
I used the command:
recon-all -subject OAS1_0153_MR1 -all -legacy
but I got the error: ERROR: you have specified -legacy, but this does not
look like a legacy analysis.
Sincerely,
Gonzalo Rojas Costa
Hi Bruce:
Because, I want to use to control points defined in the original
processing, etc, etc... for that reason I want to use legacy option...
Sincerely,
Gonzalo Rojas Costa
Bruce Fischl escribió:
try it without the -legacy
On Sat, 17 Jul 2010, Gonzalo Rojas Costa wrote:
Hi:
I
You shouldn't need legacy for that. It will always keep all edits unless you
explicitly tell it not to
On Jul 17, 2010, at 10:33 PM, Gonzalo Rojas Costa groj...@puc.cl wrote:
Hi Bruce:
Because, I want to use to control points defined in the original
processing, etc, etc... for that
In freeview if you load the volume first before loading the surface,
they should align.
Ruopeng
On 7/17/10 5:26 AM, Steffen Bollmann wrote:
Thank you so much for your quick response :)
presumably this problem does not occur in tkmedit or freeview?
it works fine in tkmedit, but in freeview
Hi Bruce:
Ok...
Sincerely,
Gonzalo Rojas Costa
Bruce Fischl escribió:
You shouldn't need legacy for that. It will always keep all edits unless you
explicitly tell it not to
On Jul 17, 2010, at 10:33 PM, Gonzalo Rojas Costa groj...@puc.cl wrote:
Hi Bruce:
Because, I want to
14 matches
Mail list logo
