Thank Bruce,
sorry for my simple question. I try to display one subject's thickness map on average surface. so I try
mri_surf2surf --srcsubject /root/freesurfer/subjects/r00275571 --srcsurfval /root/freesurfer/subjects/r00275571/surf/lh.thickness --trgsubject /root/freesurfer/subjects/fsaverage
you can either use --tfmt target format to specify the format, or just
add .mgh to the end of the output file so it knows what format to save it
in.
On Fri, 14 Jan 2011 t...@ms36.hinet.net wrote:
[NON-Text Body part not included]
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Freesurfer
Hi,
is there any documentation on the aseg corpus callosum segmentation
(the one with five subdividivisons) that I could refer to? I guess this
is still the preferred cc seg in FS (not the one pased on cortical
parcellation)?
Thanks a lot in advance!
Best,
Kristine
--
Kristine B
Hi Kristine
yes, definitely use the aseg version. I think Diana Rosas might have
described it in one of her papers, but I'm not positive.
cheers
Bruce
On Fri,
14 Jan 2011, Kristine Beate Walhovd wrote:
Hi,
is there any documentation on the aseg corpus callosum segmentation
(the one with
Hi, when trying to look at surfaces in tksurfer, all I see is a small
part of the data in the posterior of the brain (see attached for
example). There are no errors on the command line when I run tksurfer.
This only started happening very recently. Here's some system info:
(CentOS 5.5, 64-bit;
Hi experts,
I'm running the commands from recon-all -autorecon3 from a script file
and I'm getting the following errors
mri_segstats: unknown option --empty
mri_aparc2aseg: unknown option --ribbon
From the help files, mri_segstats has option --nonempty and
mri_aparc2aseg has an option
I will be out of the country from Jan. 10 - Jan 18, 2011, and will not
have access to email. For issues concerning my laboratory, please contact
my lab manager, Rosa Lafer-Sousa (rlafe...@wellesley.edu).
Thank-you and I'll be in touch when I get back.
Bevil
when i ran, mri_segstats --seg fsavegagepath/hemi.fsaverage.hemi_roi_subj.mgh
--in hemi.thickness.fsaverage.mgh --sum segstats-hemi_roi_subj.txt - in
order to find the --sum segstats, error occured:
Error:dimension mismatch between input volume and seg
input 16342 1 1
seg23406 1 7
I want to measure the cortical thickness of my ROI. When i ran, mri_segstats
--seg fsavegagepath/hemi.fsaverage.hemi_roi_subj.mgh --in
hemi.thickness.fsaverage.mgh --sum segstats-hemi_roi_subj.txt- in
order to find the --sum segstats, error occured:
Error:dimension mismatch between
