Dear Doug and Freesurfers,
I have a structural MRI and DTI set of images that i've corregistered
(individually) using bbregister.
My mincost files show a value that varies between 0.1 and 0.2 for all
subjects.
I read the paper by Grieve et al., 2009 Neuroimage and was wondering
whether it is
Hi Doug,
thanks for your advice. By modifiying the mri_mergelabels command we
find a solution to create labels with an and connection. To be sure
about the output, what exactly does the columns represent in the label
file. I assume that the first column is the index of the vertex, the
next three
Hi,
I want to make a mask file from the output file of mri_glmfit, sig.mgh.
will you show me how to get it?
thank you.
YUMI
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The
See mri_binarize --help.It can create a mask of ones between a specified
range and zeros otherwise.
N.
On Nov 22, 2011, at 9:54 AM, YUMI MAEDA yma...@nmr.mgh.harvard.edu wrote:
Hi,
I want to make a mask file from the output file of mri_glmfit, sig.mgh.
will you show me how to get it?
Dear Lilla,
Thanks again for your valuable help.
I tried to run the mri_cvs_register for one of my subjects P07 (the structural
data). By looking on the mri_cvs_register --help I see that is I want
to register Subj1 to average CVS space I need to run:
mri_cvs_register --mov Subj1ID
Is
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Hi,
I was previously using dcm2nii to convert DWI dicom series to the nifti
format. I want to change my process to use mri_convert instead, as I am
having a lot of orientation problems using dcm2nii. My problem is that
while dcm2nii extracted the bvecs/bvals into files separate from the nifti,
the Talairach coords reported in tkmedit are the 'Brett' corrected
coordinates. the mni305 are also available, but off by default, if you
select View-Information-MNI Coordinates.
n.
On Tue, 2011-11-22 at 14:42 -0500, Tanner,Jared J wrote:
Hi,
I just wanted to verify what the Talaiarch
Hello,
Thank you Bruce and Doug for your answers to my previous question about a
bad talairach.lta file. I am now grabbing volumes using fs5.0.0 and would
like to ask for clarification. On the Morphometry Stats page at
http://surfer.nmr.mgh.harvard.edu/fswiki/MorphometryStats, it says that the
Hello
I'm having a trouble with mri_glmfit-sim with v5.0, which is locally installed
on Mac 10.6.8.
Whan I ran:
mri_glmfit-sim --glmdir MPglm.wls --cache 3.0 pos --cwpvalthresh .0166
I got:
ERROR: cannot find
/Applications/freesurfer/average/mult-comp-cor///cortex/fwhm15/pos/th30/mc-z.csd
I
Im a little lost. Are you running a 32 or 64 bit virtual machine? Is the
host 32 bit or 64 bit? The guest can never exceed the host, I believe. I
may be wrong.
Have you tried re-downloading the virtualbox image with Freesurfer?
Josh
On Tue, Nov 22, 2011 at 1:19 AM, Popescu, V. v.pope...@vumc.nl
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