Dear FreeSurfer experts,
I am trying to create an average subject based on a matched subsample (2
different scanners, patients and healthy controls).
I successfully ran make_average_subject receiving a newtemplate. Now I am
unsure how to proceed:
As far as I understand it, according to the
Hi
I am trying to calculate correlation coefficient using freesurfer GLM for
associations between volumes and IQ. I found this ealier answar, but the matlab
script but the link appear to be dead.
http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg22648.html
Best regards
Knut J
Hi Jiyang,
Must have missed Derin's mail.
Can you send the table And command?
I can then try to see if this bug is still in our dev version or if it got
fixed in the meantime.
Best Martin
On May 30, 2012, at 22:06, Jiyang Jiang jiyang.jiang.email.li...@gmail.com
wrote:
Hi Martin,
I came
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Hi,
I am using freesurfer 5.1.0 and qdec 1.4. I'm interested in looking at
between group differences in thickness in relation to two other continuous
measures whilst controlling for ICV. However, qdec doesn't seem to let me
select more that one continuous variable even though I only have group
Hello, I am trying to run recon-all using freesurfer 5.1.0. This worked on
most of my subjects, but for about 10 subjects, I got an error:
nu_correct: Command not found
I can see on the archive that several others have run into this problem,
but I couldn't figure out from the archives what the
Hi Leon
we can give you a version of mris_make_face_parcellation if you tell us
what hardware/software environment you are running in, but it doesn not
transfer annotations from one subject to another. For that you should use
mri_surf2surf (I thought mri_label2label did this also, but I guess
Hi Cindy
did you include any nuisance variables?
cheers
Bruce
On Thu, 31 May 2012, Cynthia
Elisabeth Krafft wrote:
Hello,
Sorry for the newbie question. I completed a group analysis in QDEC and drew
a ROI, which I saved and mapped to the individual subjects. I'm interested
in getting
Hi Christina,
the new template will already be in the same target space as fsaverage
since you used the sphere.reg to create it. Just use it as a background for
your group results.
cheers
Bruce
On Thu, 31 May 2012, Schuster,
Christina /DZNE wrote:
Dear FreeSurfer experts,
I am trying
Hi, Bruce
Here is the information of my linux:
Linux version 2.6.18-308.4.1.el5 (mockbu...@hs20-bc2-4.build.redhat.com) (gcc
version 4.1.2 20080704 (Red Hat 4.1.2-52)) #1 SMP Wed Mar 28 01:54:56 EDT 2012
I think that I have figured out how to realize that by checking the archives. I
first
hi fellas,
i m doing a trial group analysis using qdec
i performed make_average_subject for 5 subjects
fixed factor= gender; continuous= age, mean thickness, nuisance factors= age
thickness, dof=4
it shows
ERROR: QdecGlmDesign::Create: zero factors!
may i please know what 'factors' is it
Hi:
How can I do a decimation to 1 polygons aprox to the pial surface ?...
Sincerely,
--
Gonzalo Rojas Costa
Laboratory for Advanced Medical Image Processing
Department of Radiology
Clínica las Condes
Lo Fontecilla 441, Las Condes, Santiago, Chile.
Tel: 56-2-2105170
Cel: 56-9-97771785
Have you tried doing the tutorial?
On 05/31/2012 04:34 PM, Kushal Kapse wrote:
hi fellas,
i m doing a trial group analysis using qdec
i performed make_average_subject for 5 subjects
fixed factor= gender; continuous= age, mean thickness, nuisance factors= age
thickness, dof=4
it shows
OK, try now
doug
On 05/31/2012 06:09 AM, Knut J Bjuland wrote:
Hi
I am trying to calculate correlation coefficient using freesurfer GLM
for associations between volumes and IQ. I found this ealier answar,
but the matlab script but the link appear to be dead.
hi doug,
we i am working parallel with tutorial and working on our own data
- Original Message -
From: Douglas N Greve gr...@nmr.mgh.harvard.edu
To: Kushal Kapse kka...@mail.med.upenn.edu
Cc: freesurfer@nmr.mgh.harvard.edu
Sent: Thursday, May 31, 2012 5:15:06 PM
Subject: Re:
Reshaping is not the issue. How many subjects are there? If any subject
is missing data in a vertex, that entire vertex is excluded, so if you
have one subject that is missing that area, it will not be processed.
doug
On 05/30/2012 02:53 PM, YUMI MAEDA wrote:
HI,
I figured out, one of the
For an annotation, you should use mri_surf2surf with the --sval-annot option
doug
On 05/30/2012 03:02 PM, Bruce Fischl wrote:
Hi Leon
I think mri_label2label should do the trick
cheers
Bruce
On Wed, 30 May 2012, Leon wrote:
Hi, FreeSurfer expert
I am having difficulty finding the
you could make to ic4 or ic5
On Thu, 31 May 2012, Gonzalo Rojas Costa wrote:
Hi:
How can I do a decimation to 1 polygons aprox to the pial surface ?...
Sincerely,
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
oops map it to ic4 or 5
On Thu, 31 May 2012, Gonzalo Rojas Costa wrote:
Hi:
How can I do a decimation to 1 polygons aprox to the pial surface ?...
Sincerely,
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
FYI
-- Forwarded message --
Date: Fri, 1 Jun 2012 00:27:36 +
From: Rosalind Reid rr...@seas.harvard.edu
To: asp...@chemistry.harvard.edu asp...@chemistry.harvard.edu,
airo...@fas.harvard.edu airo...@fas.harvard.edu,
david.b...@gs.com david.b...@gs.com, a...@lanl.gov
You can also use 'mris_decimate' and its companion, 'mris_decimate_gui'...
On 05/31/12 17:05, Gonzalo Rojas Costa wrote:
Hi:
How can I do a decimation to 1 polygons aprox to the pial surface ?...
Sincerely,
--
Rudolph Pienaar, M.Eng, D.Eng / email: rudo...@nmr.mgh.harvard.edu
Great.
Thanks for letting me know.
I post this to the list, so that other know.
Best Martin
On May 31, 2012, at 21:11, Jiyagn jiyang.jiang.email.li...@gmail.com wrote:
Thanks for your reply Martin!
I think I just found out where the problem was - a blank line at the end of
the
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