[Freesurfer] question about TRACULA

2013-09-20 Thread Lucia Billeci
Dear Madam/Sir, I am trying to applying TRACULA on my data but when I run the following command: trac-all -prep -c /Users/Desktop/FreesurferData/SUBJECT1/dmrirc_subject1 after some processing I obtain the following error xfmrot

Re: [Freesurfer] question about TRACULA

2013-09-20 Thread Anastasia Yendiki
Hi Lucia - The error occurs when the text file with the gradient vectors is being processed. Can you please attach that file? Thanks, a.y On Fri, 20 Sep 2013, Lucia Billeci wrote: Dear Madam/Sir, I am trying to applying TRACULA on my data but when I run the following command: trac-all

Re: [Freesurfer] Qdec analysis -- Don't use DOSS with QDEC

2013-09-20 Thread Douglas N Greve
Hi Elisa, don't use the DOSS feature in QDEC. Sorry, I sent out an email about 6mo ago on this, but it is not easy to let people know about a bug once the bug is out there. doug On 09/19/2013 11:30 AM, E. Scariati wrote: Dear Freesurfer experts, I would like to study the relationship

Re: [Freesurfer] ACFFWHM for surface-based analyses in FSFAST?

2013-09-20 Thread Douglas N Greve
Hi Caspar, I have not looked at it much. The temporal whitening has so little effect (at least at the group level), that I cannot imagine that it will make much difference. doug On 09/19/2013 09:36 AM, Caspar M. Schwiedrzik wrote: Hi Freesurfer Experts, mkanalysis-sess seems to default to a

Re: [Freesurfer] Qdec analysis -- Don't use DOSS with QDEC

2013-09-20 Thread Douglas Greve
Hi Marie, On 9/20/13 4:30 PM, Marie Schaer wrote: Hi Doug, I'm jumping in the discussion because I was a bit scared with your previous email mentioning that this DOSS bug affects all FreeSurfer's versions. Does that also affect statistical analyses computed with mri_glmfit using the

Re: [Freesurfer] Qdec analysis -- Don't use DOSS with QDEC

2013-09-20 Thread Marie Schaer
Hi Doug, I'm jumping in the discussion because I was a bit scared with your previous email mentioning that this DOSS bug affects all FreeSurfer's versions. Does that also affect statistical analyses computed with mri_glmfit using the command line? Do you have an insight whether the bias

[Freesurfer] Fwd: Brainhack 2013 Stipend Program (DEADLINE TO APPLY: 11:59PM EST SEPTEMBER 27, 2013)

2013-09-20 Thread MCLAREN, Donald
Dear Colleagues, The Neurobureau http://www.neurobureau.org is excited to announce a stipend program for Brainhack 2013 http://www.brainhack.org (October 23-26 in Sevres, France (just outside of Paris). The stipend program was created following a generous grant from Siemens Healthcare to assist

Re: [Freesurfer] ACFFWHM for surface-based analyses in FSFAST?

2013-09-20 Thread Caspar M. Schwiedrzik
Hi Doug, thanks for the response. I will also be looking at some single subject data, that's why I am asking. Do you have a hunch? Caspar On Friday, September 20, 2013, Douglas N Greve wrote: Hi Caspar, I have not looked at it much. The temporal whitening has so little effect (at least at the

Re: [Freesurfer] ACFFWHM for surface-based analyses in FSFAST?

2013-09-20 Thread Douglas Greve
I think even in single subject data it will not be much of an effect. I looked at it a little bit when I first programmed it. doug On 9/20/13 6:55 PM, Caspar M. Schwiedrzik wrote: Hi Doug, thanks for the response. I will also be looking at some single subject data, that's why I am asking.

[Freesurfer] Ph.D. student openings

2013-09-20 Thread Thomas Yeo
Hi, I am looking to recruit talented students to develop novel image analysis and machine learning algorithms for the Human Connectome Project data. This is my research webpage: https://sites.google.com/site/yeoyeo02/. See more information below. Regards, Thomas Application Deadline: Nov 1st,

[Freesurfer] postdoc opening

2013-09-20 Thread Thomas Yeo
Hi, I am looking to hire talented postdocs to develop novel image analysis and machine learning algorithms for the Human Connectome Project data. This is my research webpage: https://sites.google.com/site/yeoyeo02/. See more information below. Regards, Thomas Requirements: Ph.D. in computer