Dear Freesurfer experts,
I tried to run the local GI command recon-all -s -localGI and got the following
error message:
??? Undefined function or method 'make_outer_surface' for input arguments of
type 'char'.
From earlier post I tried to fix the problem by changing the matlabpath like
Hi all,
I find myself getting quite confused about different coordinates systems.
Is the following correct (when viewing in TkSurfer):
RAS=MNI Talairach=MNI305 (they are all the same?)
Talairach= (non linear) conversion from MNI305
Thanks,
Anita
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Dear FS experts,I have a question about compatibility for running recon-all
(longitudinal stream) between CentOS 6 x86_64 (64bit) and Mac SnowLeopard OS X
10.6 (32b Intel).
I already run recon all- for several of my subjects with a Mac Book Pro with
Snow Leopard (using Release_I386 i386).
Hello freesurfers,
I'm trying to run mri_glmfit between groups analysis (patients vs.
controls) with gender, age, medication (continuous), and duration of
illness as covariates. Because the control group have values of zeros for
medication and duration of illness (which results in an
Hi Doug, I don't see anywhere a seg.mgz.
mri_binarize --i seg.mgz --match 17 --o mask17.mgz # mask of seg 17
Corinna
On Tue, Nov 5, 2013 at 11:38 AM, Corinna Bauer corinna...@gmail.com wrote:
I think that the first option you provided is more along the lines of what
I'm looking for. Thanks
just use aseg or aparc+aseg. btw 17 = left hippocampus
On 11/18/2013 12:41 PM, Corinna Bauer wrote:
Hi Doug, I don't see anywhere a seg.mgz.
mri_binarize --i seg.mgz --match 17 --o mask17.mgz # mask of seg 17
Corinna
On Tue, Nov 5, 2013 at 11:38 AM, Corinna Bauer corinna...@gmail.com
Hi Christiane,
What do you mean when you say that you get the old path with getmatlab?
In any case, the error seems not related to a matlab path issue. Can you please
attach the entire log?
Marie
On Nov 18, 2013, at 12:03 AM, Jockwitz, Christiane
Hi Santosh
not sure if anyone else answered this, but try running
recon-all -make all
and see if that does the trick.
cheers
Bruce
On Fri, 15 Nov 2013, Santosh Kumar wrote:
Hi experts,
I came across an error in the third stage of reconstruction using
freesurfer. I am rerunning
Hi,
I hope all is well.
Was wondering if any of had heard of an explicit minimum number of DTI
directions necessary for using odf / hardi modeling ? I have run a couple
of data sets of 30 directions (+ 5 b0) through TRACULA, and have run this
same data through diffusion toolkit using the hardi /
