[Freesurfer] Tutorial for linear mixed model toolbox

Hi all, I was just wondering if there is a tutorial or example on how to use linear mixed effect model toolbox for longitudinal analysis. I already processed my structural images with longitudinal processing pipeline from freesurfer. I want to do group analysis where I have 4 groups with

[Freesurfer] Total number of vertices participating in boundary based register

Dear FreeSurfer experts, in the publication 'Accurate and robust brain image alignment using boundary-based registration', by Greve and Fischl (2009), in formula 2 a quantity termed N occurs. It is described as:'N is the total number of vertices participating'. Can I find this N in the files

[Freesurfer] Mac Download

Hi FreeSurfer, I was wondering which installation I should use if I am running iOS 10.9.1 Mavericks? Thanks, Shazia ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The

Re: [Freesurfer] Tutorial for linear mixed model toolbox

Hi Sabin, there is no tutorial, but a detailed description here (with examples): https://surfer.nmr.mgh.harvard.edu/fswiki/LinearMixedEffectsModels the long.qdec table is just a text file and described, for example, here:

Re: [Freesurfer] Mac Download

64bit Mac Lion build. http://surfer.nmr.mgh.harvard.edu/fswiki/Download But just a warning that freesurfer has not been extensively tested on OSX Mavericks. -Zeke On Jan 3, 2014, at 12:20 PM, Shazia Dharssi sd2...@columbia.edu wrote: Hi FreeSurfer, I was wondering which installation

[Freesurfer] possible to run freeview using other versions of libjpeg.so.62?

Hi, My cluster environment is setup to use libjpeg turbo on ubuntu 13.04 (ends up with libjpeg.so.8.0.2 in the /usr/lib/x86_64-linux-gnu/ directory). Is it possible to use this version of libjpeg to run freeview (it currently complaints that it cannot find libjpeg.so.62)? If so, can anyone

Re: [Freesurfer] Motion correction for SPACE FLAIR

Dear Bruce, Best wishes for 2014! I will heed your advice and cc to the list. Indeed, the MGH protocol I obtained from Andre has one acquisition (NSA). Related, I cc this post: We have been trying adaptations of the T2spaceFLAIR MGH protocol on our Phillips 3T scanners (sequences called VISTA).

[Freesurfer] Change in Tracula ability to use bvec / bval file containing zeros for b0 images?

Hi, I have been trying to rerun cases through the new (12/13) tracula code, which I had successfully ran through the pre 12/13 code. While I am still trying to sort out the libnetcdf.so.6 issue on our cluster, I also noticed that cases which I ran using the bvec and bval files including 0's for