Re: [Freesurfer] FW: Error #@# MotionCor {Disarmed}

2015-05-10 Thread pablo najt
Thanks Pablo Date: Sat, 9 May 2015 15:58:19 -0400 From: fis...@nmr.mgh.harvard.edu To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] FW: Error #@# MotionCor Hi Pablo why are you listing fsaverage as the subject you are processing? The error says you are runing: recon-all -s

[Freesurfer] dt_recon

2015-05-10 Thread Pedro Rosa - GMail
Dear developers, I am running an analysis with dt_recon, and it seems that my DWI files are organized into three series (one larger, and two smaller, that I believe are ADC and Trace). Inputing a DICOM file to dt_recon generates a .nii file from one of the series only (the larger one, once it

[Freesurfer] xhemi final iteration

2015-05-10 Thread Derek James Dean
Dear Freesurfer community,I am trying to complete the final iteration described in the Xhemi wiki page to compare left-right hemisphere symmetry between a patient and control group but I get an error when I run make_average_subject.Basic information:FREESURFER_HOME: