Dear FreeSurfer Users,
I have tried to download FreeSurfer but I am not sure I’ve done it correctly.
Could you send me a guide to download it properly?
Inside freesurfer there is only “Freeview” as a program. Is that correct?
I notice that there is a folder “matlab”, isn’t there a description
Hi there,I recently tried to update the Freeview version so I can have the recon edit button. I managed to copy the file over but now I get the following error:dyld: Library not loaded: @executable_path/../Frameworks/QtScriptTools.framework/Versions/4/QtScriptTools Referenced from:
Hello Isabelle,
Freeview has been undergoing many changes and you simply got unlucky and
downloaded an unstable version of the program. I will be posting an
updated version within the day and I will email you directly when it
becomes available.
-Zeke
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does it work if you don't use --maxstatwinner ?
On 05/13/2015 05:31 PM, Aaron Goldman wrote:
Hello,
From the standard fsaverage subject, I'm trying to map a series of
labels (?h.oasis.chubs.*) to a group of my own subjects. My end goal
is to create summary files equivalent to
Hi,
Does anyone know what has changed in isxconcat-sess command in
nmr-dev-env? Previously I could use it to average different sessions of
the same subject. But now I am getting this error:
INFO: trgsubject is self, this will fail unless all sessions are the same
subject
ERROR: cannot find
Hello Freesurfer experts,
I ran an analysis using mri_glmfit and a manually drawn label of the
parietal lobe that was mapped to every subject and a tablefile was used as
the dependent measure. The output is a negative log 10 p-value. I was
curious if I could possibly view that in freeview on an
there's nothing there (?)
On 05/14/2015 06:13 PM, Derek James Dean wrote:
Here is the debug output.
~$ cd $SUBJECTS_DIR
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Sorry about that, Outlook seems to be preventing me from sending the code in email. I have attached a text document of the output.
output
Description: output
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Hi Doug,Thanks for your help.When I run the following command:images$ make_average_subject --out myatlas.i3 --surf-reg myatlas.i2.sphere.reg --fsgd laterality.fsgd --xhemi --lh
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I just made a fix. Can you try it out and let me know if it works?
On 05/14/2015 11:38 AM, SHAHIN NASR wrote:
Hi,
Does anyone know what has changed in isxconcat-sess command in
nmr-dev-env? Previously I could use it to average different sessions
of the same subject. But now I am getting
can you run it with --debug as the first option and send the terminal
output?
On 05/14/2015 05:35 PM, Derek James Dean wrote:
Hi Doug,
Thanks for your help.
When I run the following command:
images$ make_average_subject --out myatlas.i3 --surf-reg
myatlas.i2.sphere.reg --fsgd
Here is the debug output.~$ cd $SUBJECTS_DIR
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The information in this e-mail is intended only for the person to whom it is
Hi Annie,
I have previously extracted individual regions from the 7 and 17
networks. You can download them here
(https://www.dropbox.com/s/u23nn3ov18tlhfs/Yeo_JNeurophysiol11_SplitLabels.zip?dl=0).
Please see the README in the folder for more explanations. There
should be a precuneus DMN region.
Hi Doug,
It works without any error.
Thanks a lot
On Thu, May 14, 2015 at 5:47 PM, Douglas N Greve gr...@nmr.mgh.harvard.edu
wrote:
I just made a fix. Can you try it out and let me know if it works?
On 05/14/2015 11:38 AM, SHAHIN NASR wrote:
Hi,
Does anyone know what has changed
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