Hi Susanne
can you just send us the recon-all command lines that are issued by your
script? And tell us what is different?
Bruce
On Tue, 12 Jan 2016, Schell, Susanne wrote:
Dear colleagues,
as I posted before, we are recently using the freesurfer recon-all command.
Here are three
Hi,
I am running mri_convert (from .dcm to .nii.gz) and I get the following error:
ERROR: RLL-encoded image data not supported!
(Transfer Syntax UID: 1.2.840.10008.1.2.5)
Any help is appreciated. Thank you!
Kalli
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Freesurfer mailing list
Hi Bruce,
thanks for the quick reply, I am running v5.3.0 from a Linux, but more than 2/3
through my data set so don't really want to swap to 6..
Where can I get the beta and how would it help?
Thanks,
Areti
From:
Hi Kalli
sounds like it is compressed in some way. What version of mri_convert are
you using? If not dev, try that. If it is dev, try decompressing the
dicoms first (e.g. run something like dcmdrle on each file first)
cheers
Bruce
On Tue, 12
Jan 2016, Retzepi, Kallirroi wrote:
Hi,
I am
Dear colleagues,
as I posted before, we are recently using the freesurfer recon-all command.
Here are three different commands we used:
1)# Version 1: Import as DICOM
#!/bin/sh -e
# Segmentierung mit FreeSurfer.
# Die Ergebnisse werden in dem Verzeichnis gespeichert, in dem sich
# dieses Script
hii doug
Thanks for the reply. But it gives the error.
--
--- matlab output
MATLAB is selecting SOFTWARE OPENGL rendering.
< M A T L A B (R) >
Copyright 1984-2014 The MathWorks, Inc.
what version are you running? I believe that this is a bug that has been
fixed. Hopefully we will get version 6 out soon and upgrading will fix
this, but you can download a beta and try to make sure if you want
cheers
Bruce
On Tue,
12 Jan 2016, Smaragdi A. wrote:
> Hi mailing list,
>
> I have
Sorry, I've attached a matlab script. Copy it to $FREESURFER_HOME/matlab
and try again
doug
On 01/12/2016 09:59 AM, neha hooda wrote:
hii doug
Thanks for the reply. But it gives the error.
--
--- matlab output
MATLAB is
