Re: [Freesurfer] mri_aparc2aseg labelwm not labelling wm

Doug, I have attached a picture of what the error looks like. As you can see all the values in the volume are all zero (blue) and there is nothing next to the cortical label (red). If it helps this the code I use to create it.

Re: [Freesurfer] Extending pial surface to include excluded cortex

you should see whether that is due to an incorrectly fixed defect. If so, then you can just fix the defect (no need to add control points) On 02/07/2018 12:57 PM, Arsenije Subotic wrote: > > Hi everyone, > > > Is it possible to extend the pial surface in order to exclude some > missing cortex,

[Freesurfer] Neuroimaging postdoc position available at the University of Michigan

*Research Fellow - Multimodal neuroimaging of Parkinson’s disease* A Research Fellow position is available immediately at the Functional Neuroimaging, Cognitive, and Mobility Laboratory, Department of Radiology, University of Michigan, Ann Arbor, MI, USA. Our laboratory specializes in clinical,

[Freesurfer] How to analyze fMRI in native volume space

Dear Freesurfers! I would like have my fMRI runs in the native T1 volume space and do the first level analyses there. I can only find -self flag for surface based analyses in preproc-sess. What would be there recommended way to do the analyses in the T1 volume space? This is 7T data and I’d

Re: [Freesurfer] brainGraph (graph theory analysis in R) major release: v2.0.0

Dear Dr. Robert, It hadn't occurred to me, as I am the sole developer of the package. The User Guide should have enough information to get started (so please check it out), but I might add some content to GitHub Pages with specific, tutorial-like information (as opposed to the documentation-style

[Freesurfer] postdoctoral fellowship at Memory Disorders Research Center, VA Boston / Boston University

Posting for a colleague, please see description below: POSTDOCTORAL FELLOWSHIP IN THE COGNITIVE NEUROSCIENCE OF MEMORY Memory Disorders Research Center, Boston University School of Medicine and VA Boston Healthcare System The Memory Disorders Research Center (MDRC ; https://www.bu.edu/mdrc/ )

Re: [Freesurfer] thresh definition

they are uncorrected for multiple comparisons On 2/6/18 11:15 PM, Ashley Cole wrote: Thank you so much, Dr. Greve. My last question, are these t-tests corrected or uncorrected? On Tue, Feb 6, 2018 at 9:03 PM, Douglas Greve >

[Freesurfer] aparcstats2table subject space?

Dear FreeSurfer, When you extract e.g. thickness from the command aparcstats2table - is the data extracted from subject space? We need to know whether or not, we need to covariate for total brain volume. Bw Kasper Kasper Jessen, MD, PhD student Center for Neuropsychiatric Schizophrenia

Re: [Freesurfer] brainGraph (graph theory analysis in R) major release: v2.0.0

Dear Dr Watson, Many thanks for developping your toolbox, Is there any project to propose any "courses" or anything related to courses to get started with your toolbox, Best wishes, Gabriel Robert, MD, PhD Rennes, France 2018-02-07 2:14 GMT+01:00 Chris Watson : > Dear