Re: [Freesurfer] Problem running mri_convert

Hi Jay, Try calling "source $FREESURFER_HOME/SetUpFreeSurfer.csh” (without the quotes) at the beginning of @SUMA_Make_Spec_FS (it’s a script that should be wherever AFNI is installed, like $HOME/abin). Cheers, Ruy > On Mar 26, 2018, at 12:54 PM, Hoopes, Andrew wrote:

Re: [Freesurfer] Problem running mri_convert

Hi Jay, as a temporary fix for 6.0, I would suggest disabling SIP and rerunning: http://osxdaily.com/2015/10/05/disable-rootless-system-integrity-protection-mac-os-x/ best Andrew From: on behalf of Jay Edelman Reply-To: FS Help

[Freesurfer] Error saving a tiff file using tksurfer with NoMachine

Hi, I’m getting an error when trying to save a tiff file using tksurfer using NoMachine v5.0.47. I’m running the ENIGMA QA pipeline which has a call similar to: tkfsurfer bert lh inflated. Then, trying to save the tiff either from the GUI or using their script doesn’t work and causes the

Re: [Freesurfer] Tessellation of hippocampus

when you say it was not working, what did you try? And are you trying to cover the surface of the entire hippocampus? We need the command line and full screen output of whatever you ran, and a more detailed description of what you are trying to accomplish cheers Bruce On Mon, 26 Mar 2018,

[Freesurfer] Tessellation of hippocampus

Hi list, I was segmented the hippocampus using "recon-all -all -s -hippocampal-subfields-T1" using Freesurfer. Now i want to tessellate the segmented volume. I tried using "mri_tessellate"(Freesurfer) it is not working?? How can i tessellate the hippocampus alone? Please help me Thank You --