try
mri_compute_volume_fractions --o test --regheader
On Wed, 25 Apr 2018, Srinivasan, Dhivya wrote:
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>
> Thanks Bruce!
>
> I even tried with --regheader
>
> mri_compute_volume_fractions mri/aseg.mgz --o test --regheader identity.nofile
>
> It gives me below
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Thanks Bruce!
I even tried with --regheader
mri_compute_volume_fractions mri/aseg.mgz --o test --regheader identity.nofile
It gives me below error,
arg = 6
reading registration file mri/aseg.mgz
regio_read_register(): Success
Error reading
oh, this must be Doug's code, not mine. Try using --regheader instead
And also please send us the full command and all screen output from it in
the future.
cheers
Bruce
On
Wed, 25 Apr 2018, Srinivasan, Dhivya wrote:
>External Email - Use Caution
>
> Sorry for bothering with more
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Hi Douglas,
I applied a non-rigid registration to my nifti files using another software
(IRTK) and then tried to run dt_recon in Freesurfer. Dt_recon is failing
during Fitting Tensors and the error message it is displaying is "ERROR:
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Sorry for bothering with more questions!
I am getting an error saying ,
mri_compute_volume_fractions: could not load registration file from
identity.nofile
And my command is,
mri_compute_volume_fractions identity.nofile mri/aseg.mgz test
and if
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Thank you so much for your quick reply !
From: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl
[fis...@nmr.mgh.harvard.edu]
Sent: Wednesday, April 25,
Hi Dhivya
if you are doing it in the space of the anatomicals, then use
identity.nofile as the reg file (which is a special file name that will
internally create an identity matrix). The output stem is whatever you
pick - it will be prepended to the files that are written with the volume
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Hi,
I would like to get CSF/GM/WM segmentations from aseg.mgz or in other words
from labeled brain. Can I do that with mri_compute_volume_fractions ? Also, I
am not sure about the parameters to supply,
and ?
Could Someone point me to some
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Hello FreeSurfer users,
I am trying to run hippocampal subfield segmentation on our subjects on
FreeSurfer version 6.0. Unfortunately, I was not able to get very far. I got an
error relatively early:
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Hi Ryan,
This is weird! I am safely assuming that you sourced FreeSurfer, etc? What was
the command you ran?
Cheers,
/Eugenio
--
Juan Eugenio Iglesias
ERC Senior Research Fellow
Translational Imaging Group
University College London
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Hello FreeSurfer users,
I am trying to run hippocampal subfield segmentation on our subjects on
FreeSurfer version 6.0. Unfortunately, I was not able to get very far. I got an
error relatively early:
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Hello,
I have processed the majority of my T1 images using the general recon-all
command. After reviewing segmentation, a number of images have the pial surface
included in the gray matter. I re-ran an image with the recon-all command
combining the
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Dear tractography experts
does anyone have the arcuate fasciculus seed regions in MNI space and is
willing to share these seeds with us?
we are also interested in MNI space seed regions of the different parts of the
SLF (according work done by
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