Yes, if you set --psf 0 then it will only apply correction for the
tissue fraction effect (TFE).
On 6/15/18 10:53 AM, Alshikho, Mohamad J. wrote:
Dear Dr Greve,
Kindly, I’d like t to inquire about the command “mri_gtmpvc” in PET
surfer. Can I use this command to apply partial volume
Dear Dr Greve,
Kindly, I'd like t to inquire about the command "mri_gtmpvc" in PET surfer. Can
I use this command to apply partial volume correction on non-PET data (e.g. DTI
or ASL)?
Thanks!
Mohamad
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Sorry, it is indeed. Thank you very much!
On Fri, Jun 15, 2018 at 11:30 AM Douglas Greve
wrote:
> It should auotmatically be included in the output asegstats2table. is it
> not?
>
> On 6/15/18 10:23 AM, Fernanda Hansen P. de Moraes wrote:
>
>
It should auotmatically be included in the output asegstats2table. is it
not?
On 6/15/18 10:23 AM, Fernanda Hansen P. de Moraes wrote:
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Good morning all,
I want to get the TotalGrayVol and SubCortGrayVol for multiple
subjects. Is there any flag that I
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Good morning all,
I want to get the TotalGrayVol and SubCortGrayVol for multiple subjects. Is
there any flag that I can use with asegstats2table? Or how should I use
mri_segstas to creata a new aseg.stats file for my subjects?
If that's the case, how
There are files called lh.area and lh.volume that you can use instead of
lh.thickness. Make sure to use the --jac flag when applying
mri_surf2surf to area or volume (but not thickness). This applies
jacobian correction to preserve the total area or volume. When you run
mri_segstats, include
Those are the qdec tables, not the fsgd file. Look in the qdec output
folder for a file called y.fsgd. Also please remember to post to the
list and not to us personally
On 6/15/18 12:40 AM, Seung-Gul Kang (강승걸) wrote:
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Hi Doug,
Thank you for your reply.
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Hi Eugenio and experts,
We are doing a multi-site data analysis comparing groups cross-sectionally.
Most data that we will input for the segmentHA_t1.sh analysis has been
pre-processed cross-sectionally in FS5.3 (recon all).
About 10% of the data
